Strain Fitness in Rahnella sp. WP5 around EX31_RS14170

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
9,142	+		EX31_RS14165	0.28	-0.2
9,161	-		EX31_RS14165	0.29	+0.2
9,169	+		EX31_RS14165	0.30	+0.4
9,169	+		EX31_RS14165	0.30	+0.5
9,239	+		EX31_RS14165	0.35	+0.7
9,239	+		EX31_RS14165	0.35	-0.6
9,240	-		EX31_RS14165	0.35	-0.5
9,289	+		EX31_RS14165	0.38	-1.4
9,290	-		EX31_RS14165	0.39	-1.2
9,320	+		EX31_RS14165	0.41	-0.3
9,360	+		EX31_RS14165	0.44	-0.1
9,360	+		EX31_RS14165	0.44	-0.9
9,361	-		EX31_RS14165	0.44	-0.2
9,361	-		EX31_RS14165	0.44	-0.8
9,361	-		EX31_RS14165	0.44	+0.4
9,361	-		EX31_RS14165	0.44	+0.5
9,437	-		EX31_RS14165	0.49	-0.7
9,437	-		EX31_RS14165	0.49	-0.2
9,511	+		EX31_RS14165	0.54	-0.5
9,511	+		EX31_RS14165	0.54	+0.2
9,511	+		EX31_RS14165	0.54	+1.3
9,511	+		EX31_RS14165	0.54	-0.2
9,512	-		EX31_RS14165	0.54	+0.5
9,512	-		EX31_RS14165	0.54	+0.2
9,548	+		EX31_RS14165	0.57	-1.0
9,548	+		EX31_RS14165	0.57	-0.7
9,549	-		EX31_RS14165	0.57	+0.4
9,549	-		EX31_RS14165	0.57	-1.1
9,568	+		EX31_RS14165	0.58	+0.1
9,568	+		EX31_RS14165	0.58	+0.3
9,568	+		EX31_RS14165	0.58	-0.8
9,568	+		EX31_RS14165	0.58	-0.4
9,569	-		EX31_RS14165	0.58	-0.3
9,569	-		EX31_RS14165	0.58	+0.5
9,644	+		EX31_RS14165	0.64	-0.3
9,644	+		EX31_RS14165	0.64	+0.8
9,644	+		EX31_RS14165	0.64	+1.0
9,644	+		EX31_RS14165	0.64	-0.1
9,645	-		EX31_RS14165	0.64	+0.2
9,645	-		EX31_RS14165	0.64	-0.8
9,645	-		EX31_RS14165	0.64	+2.2
9,645	-		EX31_RS14165	0.64	+0.2
9,645	-		EX31_RS14165	0.64	+0.2
9,664	+		EX31_RS14165	0.65	-0.6
9,664	+		EX31_RS14165	0.65	+0.1
9,664	+		EX31_RS14165	0.65	-0.6
9,664	+		EX31_RS14165	0.65	-0.4
9,664	+		EX31_RS14165	0.65	-0.5
9,664	+		EX31_RS14165	0.65	+0.2
9,664	+		EX31_RS14165	0.65	-1.6
9,664	+		EX31_RS14165	0.65	+1.0
9,665	-		EX31_RS14165	0.65	+0.4
9,665	-		EX31_RS14165	0.65	-0.9
9,665	-		EX31_RS14165	0.65	+0.2
9,665	-		EX31_RS14165	0.65	+0.2
9,665	-		EX31_RS14165	0.65	-0.6
9,665	-		EX31_RS14165	0.65	-0.1
9,665	-		EX31_RS14165	0.65	-1.5
9,665	-		EX31_RS14165	0.65	+0.2
9,669	-		EX31_RS14165	0.66	-0.7
9,669	-		EX31_RS14165	0.66	+0.5
9,730	+		EX31_RS14165	0.70	+0.6
9,776	-		EX31_RS14165	0.73	-0.5
9,777	+		EX31_RS14165	0.73	-0.3
9,778	-		EX31_RS14165	0.73	-1.1
9,778	-		EX31_RS14165	0.73	-0.1
9,778	-		EX31_RS14165	0.73	+0.6
9,797	-		EX31_RS14165	0.75	-0.2
9,797	-		EX31_RS14165	0.75	+0.1
9,797	-		EX31_RS14165	0.75	+1.1
9,797	-		EX31_RS14165	0.75	+0.1
9,800	+		EX31_RS14165	0.75	+0.1
9,800	+		EX31_RS14165	0.75	+0.4
9,800	+		EX31_RS14165	0.75	-0.8
9,801	-		EX31_RS14165	0.75	+0.1
9,801	-		EX31_RS14165	0.75	-0.1
9,801	-		EX31_RS14165	0.75	-0.4
9,801	-		EX31_RS14165	0.75	-0.6
9,801	-		EX31_RS14165	0.75	+0.7
9,801	-		EX31_RS14165	0.75	-0.2
9,801	-		EX31_RS14165	0.75	-1.9
9,866	+		EX31_RS14165	0.80	-0.8
9,889	+		EX31_RS14165	0.81	-0.5
9,890	-		EX31_RS14165	0.81	-0.4
9,890	-		EX31_RS14165	0.81	+0.6
10,009	+		EX31_RS14165	0.90	+0.1
10,054	+				+0.2
10,054	+				-1.8
10,054	+				-1.1
10,054	+				-0.9
10,054	+				+0.1
10,054	+				+0.3
10,055	-				-1.9
10,055	-				-1.8
10,055	-				-0.4
10,055	-				-0.5
10,055	-				+0.1
10,055	-				+0.0
10,057	+				+0.1
10,057	+				+0.2
10,064	+				-0.8
10,075	+				-0.3
10,075	+				+0.9
10,076	-				+0.3
10,076	-				+0.2
10,088	+				+0.4
10,088	+				+0.1
10,089	-				-1.1
10,148	+				-0.9
10,149	-				-0.2
10,170	+				+0.3
10,170	+				+0.4
10,170	+				+0.4
10,170	+				-0.3
10,170	+				-0.3
10,170	+				+0.3
10,170	+				-0.8
10,170	+				-0.5
10,170	+				-0.2
10,170	+				-0.6
10,170	+				+0.6
10,170	+				-0.2
10,170	+				+0.4
10,171	-				+0.5
10,171	-				-0.4
10,171	-				+0.8
10,171	-				-0.2
10,171	-				-0.6
10,171	-				-0.4
10,171	-				+0.2
10,242	+		EX31_RS14170	0.12	+0.7
10,242	+		EX31_RS14170	0.12	-0.4
10,242	+		EX31_RS14170	0.12	-0.5
10,242	+		EX31_RS14170	0.12	-0.1
10,243	-		EX31_RS14170	0.12	-0.8
10,243	-		EX31_RS14170	0.12	+0.1
10,244	+		EX31_RS14170	0.12	+1.2
10,244	+		EX31_RS14170	0.12	-2.3
10,245	-		EX31_RS14170	0.12	-0.9
10,245	-		EX31_RS14170	0.12	-1.2
10,245	-		EX31_RS14170	0.12	-0.7
10,245	-		EX31_RS14170	0.12	-2.2
10,245	-		EX31_RS14170	0.12	-1.1
10,245	-		EX31_RS14170	0.12	-0.2
10,245	-		EX31_RS14170	0.12	-0.5
10,245	-		EX31_RS14170	0.12	+0.0
10,245	-		EX31_RS14170	0.12	-1.3
10,245	-		EX31_RS14170	0.12	-0.8
10,245	-		EX31_RS14170	0.12	-0.3
10,245	-		EX31_RS14170	0.12	-2.0
10,290	+		EX31_RS14170	0.17	-0.7
10,290	+		EX31_RS14170	0.17	-0.1
10,291	-		EX31_RS14170	0.17	-0.7
10,345	+		EX31_RS14170	0.23	-0.6
10,345	+		EX31_RS14170	0.23	-0.1
10,345	+		EX31_RS14170	0.23	+1.7
10,346	-		EX31_RS14170	0.23	-1.4
10,346	-		EX31_RS14170	0.23	-0.4
10,369	+		EX31_RS14170	0.26	-2.1
10,369	+		EX31_RS14170	0.26	-1.4
10,370	-		EX31_RS14170	0.26	-0.4
10,370	-		EX31_RS14170	0.26	+0.2
10,408	+		EX31_RS14170	0.30	-0.6
10,548	+		EX31_RS14170	0.45	-0.9
10,548	+		EX31_RS14170	0.45	-1.2
10,548	+		EX31_RS14170	0.45	-1.5
10,549	-		EX31_RS14170	0.45	-0.5
10,549	-		EX31_RS14170	0.45	-0.4
10,549	-		EX31_RS14170	0.45	-1.1
10,592	-		EX31_RS14170	0.50	-0.6
10,662	-		EX31_RS14170	0.57	+0.2
10,689	+		EX31_RS14170	0.60	-1.1
10,689	+		EX31_RS14170	0.60	+0.0
10,689	+		EX31_RS14170	0.60	-0.2
10,689	+		EX31_RS14170	0.60	-2.3
10,690	-		EX31_RS14170	0.60	-0.3
10,690	-		EX31_RS14170	0.60	-0.7
10,690	-		EX31_RS14170	0.60	-1.0
10,746	+		EX31_RS14170	0.66	-0.6
10,747	-		EX31_RS14170	0.66	-0.3
10,747	-		EX31_RS14170	0.66	-0.3
10,747	-		EX31_RS14170	0.66	-0.2
10,842	-		EX31_RS14170	0.77	+0.6
10,842	-		EX31_RS14170	0.77	-0.6
10,842	-		EX31_RS14170	0.77	+0.1
10,842	-		EX31_RS14170	0.77	-0.1
10,842	-		EX31_RS14170	0.77	-2.9
10,886	-		EX31_RS14170	0.81	-0.8
10,921	+		EX31_RS14170	0.85	-0.6
10,921	+		EX31_RS14170	0.85	-1.0
10,921	+		EX31_RS14170	0.85	-3.2
10,922	-		EX31_RS14170	0.85	-1.1
10,922	-		EX31_RS14170	0.85	-0.9
10,962	-		EX31_RS14170	0.90	-0.7
11,034	+				-0.8
11,035	-				-0.6
11,035	-				-0.5
11,035	-				-0.2
11,035	-				-0.2
11,039	+				-1.2
11,039	+				-0.3
11,039	+				-0.5
11,040	-				-0.9
11,040	-				-0.3
11,040	-				-0.6
11,040	-				-2.2
11,040	-				-0.4
11,073	-				-0.2
11,101	-				-0.2
11,101	-				-0.3
11,104	+				+0.5
11,104	+				-0.2
11,104	+				+0.1
11,124	-				+0.5
11,125	+				-0.1
11,129	+				+0.6
11,129	+				-0.9
11,130	-				+0.3
11,130	-				+0.4
11,139	+				-0.2
11,148	+				+0.3
11,149	-				+0.3
11,204	+				+1.3
11,204	+				+0.6
11,205	-				-1.1
11,246	-				-0.4
11,255	+				-0.7
11,388	+		EX31_RS14175	0.22	+0.5
11,388	+		EX31_RS14175	0.22	+0.2
11,388	+		EX31_RS14175	0.22	-0.3
11,388	+		EX31_RS14175	0.22	+0.1
11,388	+		EX31_RS14175	0.22	+0.1
11,389	-		EX31_RS14175	0.23	-0.1
11,389	-		EX31_RS14175	0.23	+1.1
11,389	-		EX31_RS14175	0.23	-0.3
11,412	-		EX31_RS14175	0.26	-0.3
11,412	-		EX31_RS14175	0.26	+0.2
11,572	+		EX31_RS14175	0.47	+0.4
11,598	+		EX31_RS14175	0.50	+0.2
11,623	+		EX31_RS14175	0.53	+0.6
11,623	+		EX31_RS14175	0.53	-0.1
11,700	+		EX31_RS14175	0.63	-0.2
11,700	+		EX31_RS14175	0.63	+0.9
11,700	+		EX31_RS14175	0.63	+0.4
11,700	+		EX31_RS14175	0.63	+0.2
11,700	+		EX31_RS14175	0.63	+0.3
11,700	+		EX31_RS14175	0.63	+0.5
11,700	+		EX31_RS14175	0.63	+0.0
11,717	+		EX31_RS14175	0.66	-0.1
11,717	+		EX31_RS14175	0.66	+1.0
11,718	-		EX31_RS14175	0.66	+0.6
11,722	+		EX31_RS14175	0.66	-0.5
11,722	+		EX31_RS14175	0.66	+0.1
11,722	+		EX31_RS14175	0.66	+1.3
11,723	-		EX31_RS14175	0.66	+0.3
11,723	-		EX31_RS14175	0.66	+0.0
11,723	-		EX31_RS14175	0.66	+0.3
11,741	-		EX31_RS14175	0.69	-0.2
11,821	+		EX31_RS14175	0.79	+0.7
11,824	+		EX31_RS14175	0.80	+0.7
11,825	-		EX31_RS14175	0.80	+0.5
11,825	-		EX31_RS14175	0.80	+0.3
11,825	-		EX31_RS14175	0.80	-0.2
11,825	-		EX31_RS14175	0.80	+1.4
11,825	-		EX31_RS14175	0.80	+0.3
11,828	+		EX31_RS14175	0.80	+0.6
11,828	+		EX31_RS14175	0.80	-0.4
11,934	+				-0.6
11,935	-				-0.5
11,976	+				-0.6
11,976	+				-0.8
11,977	-				-0.0
11,998	+				+0.1
11,998	+				+0.6
12,029	+				-0.4
12,029	+				-1.7
12,034	+				-0.1
12,035	-				+0.5