Strain Fitness in Rahnella sp. WP5 around EX31_RS14025

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14020 and EX31_RS14025 are separated by 348 nucleotidesEX31_RS14025 and EX31_RS14030 are separated by 19 nucleotidesEX31_RS14030 and EX31_RS14035 are separated by 73 nucleotides EX31_RS14020: EX31_RS14020 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 68,265 to 69,407 _RS14020 EX31_RS14025: EX31_RS14025 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 69,756 to 70,505 _RS14025 EX31_RS14030: EX31_RS14030 - glutathione peroxidase, at 70,525 to 71,076 _RS14030 EX31_RS14035: EX31_RS14035 - vitamin B12 ABC transporter permease BtuC, at 71,150 to 72,157 _RS14035 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 68.800 kb on - strand, within EX31_RS14020at 68.859 kb on - strand, within EX31_RS14020at 68.920 kb on + strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.986 kb on + strand, within EX31_RS14020at 68.986 kb on + strand, within EX31_RS14020at 68.987 kb on - strand, within EX31_RS14020at 68.987 kb on - strand, within EX31_RS14020at 69.263 kb on + strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.337 kb on - strandat 69.358 kb on - strandat 69.408 kb on + strandat 69.427 kb on - strandat 69.427 kb on - strandat 69.427 kb on - strandat 69.430 kb on + strandat 69.431 kb on - strandat 69.446 kb on - strandat 69.446 kb on - strandat 69.460 kb on + strandat 69.466 kb on + strandat 69.466 kb on + strandat 69.467 kb on - strandat 69.488 kb on + strandat 69.489 kb on - strandat 69.498 kb on - strandat 69.498 kb on - strandat 69.527 kb on + strandat 69.725 kb on - strandat 69.728 kb on - strandat 69.728 kb on - strandat 69.730 kb on + strandat 69.730 kb on + strandat 69.731 kb on - strandat 69.737 kb on - strandat 69.815 kb on - strandat 69.829 kb on - strandat 69.887 kb on + strand, within EX31_RS14025at 69.887 kb on + strand, within EX31_RS14025at 69.888 kb on - strand, within EX31_RS14025at 69.888 kb on - strand, within EX31_RS14025at 70.049 kb on + strand, within EX31_RS14025at 70.080 kb on + strand, within EX31_RS14025at 70.161 kb on + strand, within EX31_RS14025at 70.161 kb on + strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.162 kb on - strand, within EX31_RS14025at 70.281 kb on + strand, within EX31_RS14025at 70.371 kb on - strand, within EX31_RS14025at 70.424 kb on + strand, within EX31_RS14025at 70.662 kb on + strand, within EX31_RS14030at 70.929 kb on - strand, within EX31_RS14030at 70.932 kb on + strand, within EX31_RS14030at 70.933 kb on - strand, within EX31_RS14030at 70.949 kb on + strand, within EX31_RS14030at 70.950 kb on - strand, within EX31_RS14030at 70.950 kb on - strand, within EX31_RS14030at 70.950 kb on - strand, within EX31_RS14030at 70.996 kb on + strand, within EX31_RS14030at 71.007 kb on + strand, within EX31_RS14030at 71.007 kb on + strand, within EX31_RS14030at 71.007 kb on + strand, within EX31_RS14030at 71.008 kb on - strand, within EX31_RS14030at 71.008 kb on - strand, within EX31_RS14030at 71.010 kb on - strand, within EX31_RS14030at 71.041 kb on - strandat 71.055 kb on + strandat 71.055 kb on + strandat 71.055 kb on + strandat 71.061 kb on - strandat 71.071 kb on - strandat 71.097 kb on + strandat 71.103 kb on - strandat 71.229 kb on - strandat 71.261 kb on + strand, within EX31_RS14035at 71.262 kb on - strand, within EX31_RS14035at 71.276 kb on + strand, within EX31_RS14035at 71.277 kb on - strand, within EX31_RS14035at 71.438 kb on - strand, within EX31_RS14035at 71.439 kb on + strand, within EX31_RS14035at 71.459 kb on + strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035at 71.499 kb on - strand, within EX31_RS14035

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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68,800 - EX31_RS14020 0.47 +0.5
68,859 - EX31_RS14020 0.52 +0.8
68,920 + EX31_RS14020 0.57 -1.1
68,976 - EX31_RS14020 0.62 +0.7
68,976 - EX31_RS14020 0.62 +0.8
68,976 - EX31_RS14020 0.62 +0.4
68,986 + EX31_RS14020 0.63 +0.2
68,986 + EX31_RS14020 0.63 +0.9
68,987 - EX31_RS14020 0.63 +1.0
68,987 - EX31_RS14020 0.63 +0.8
69,263 + EX31_RS14020 0.87 +1.2
69,264 - EX31_RS14020 0.87 +0.3
69,264 - EX31_RS14020 0.87 +0.4
69,264 - EX31_RS14020 0.87 +0.2
69,264 - EX31_RS14020 0.87 -0.3
69,264 - EX31_RS14020 0.87 +0.1
69,264 - EX31_RS14020 0.87 +0.7
69,264 - EX31_RS14020 0.87 +1.0
69,264 - EX31_RS14020 0.87 +0.3
69,264 - EX31_RS14020 0.87 +1.0
69,264 - EX31_RS14020 0.87 +1.9
69,264 - EX31_RS14020 0.87 +1.0
69,264 - EX31_RS14020 0.87 +0.8
69,337 - +0.6
69,358 - +0.7
69,408 + +1.1
69,427 - -0.5
69,427 - +0.0
69,427 - +0.1
69,430 + +0.5
69,431 - -0.1
69,446 - +0.1
69,446 - +0.9
69,460 + +1.8
69,466 + -0.9
69,466 + +1.6
69,467 - +0.6
69,488 + -1.1
69,489 - +0.2
69,498 - -0.1
69,498 - -0.1
69,527 + -0.6
69,725 - +0.5
69,728 - +0.5
69,728 - +0.1
69,730 + -0.6
69,730 + -2.3
69,731 - -1.3
69,737 - +0.1
69,815 - -0.7
69,829 - +0.6
69,887 + EX31_RS14025 0.17 +0.3
69,887 + EX31_RS14025 0.17 +0.1
69,888 - EX31_RS14025 0.18 -0.8
69,888 - EX31_RS14025 0.18 -0.2
70,049 + EX31_RS14025 0.39 -0.3
70,080 + EX31_RS14025 0.43 -0.9
70,161 + EX31_RS14025 0.54 -0.0
70,161 + EX31_RS14025 0.54 +0.7
70,162 - EX31_RS14025 0.54 -1.1
70,162 - EX31_RS14025 0.54 -0.2
70,162 - EX31_RS14025 0.54 -0.1
70,162 - EX31_RS14025 0.54 +0.1
70,281 + EX31_RS14025 0.70 -0.9
70,371 - EX31_RS14025 0.82 +0.6
70,424 + EX31_RS14025 0.89 -1.5
70,662 + EX31_RS14030 0.25 -0.7
70,929 - EX31_RS14030 0.73 -1.4
70,932 + EX31_RS14030 0.74 -0.8
70,933 - EX31_RS14030 0.74 +0.3
70,949 + EX31_RS14030 0.77 +0.5
70,950 - EX31_RS14030 0.77 -0.2
70,950 - EX31_RS14030 0.77 +0.1
70,950 - EX31_RS14030 0.77 -1.8
70,996 + EX31_RS14030 0.85 -1.7
71,007 + EX31_RS14030 0.87 +1.3
71,007 + EX31_RS14030 0.87 +0.3
71,007 + EX31_RS14030 0.87 +0.9
71,008 - EX31_RS14030 0.88 +0.2
71,008 - EX31_RS14030 0.88 +0.5
71,010 - EX31_RS14030 0.88 +0.1
71,041 - +0.6
71,055 + +0.1
71,055 + +0.1
71,055 + -0.6
71,061 - +0.8
71,071 - +0.8
71,097 + -0.3
71,103 - -0.5
71,229 - +1.1
71,261 + EX31_RS14035 0.11 -0.5
71,262 - EX31_RS14035 0.11 -1.2
71,276 + EX31_RS14035 0.12 -0.4
71,277 - EX31_RS14035 0.13 -0.5
71,438 - EX31_RS14035 0.29 -0.1
71,439 + EX31_RS14035 0.29 +0.0
71,459 + EX31_RS14035 0.31 +1.1
71,499 - EX31_RS14035 0.35 -1.0
71,499 - EX31_RS14035 0.35 -0.3
71,499 - EX31_RS14035 0.35 -0.5
71,499 - EX31_RS14035 0.35 -0.9
71,499 - EX31_RS14035 0.35 -2.1

Or see this region's nucleotide sequence