Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12385 and EX31_RS12390 are separated by 67 nucleotides EX31_RS12390 and EX31_RS12395 are separated by 110 nucleotides EX31_RS12395 and EX31_RS12400 are separated by 23 nucleotides EX31_RS12400 and EX31_RS12405 are separated by 101 nucleotides EX31_RS12405 and EX31_RS12410 are separated by 6 nucleotides
EX31_RS12385: EX31_RS12385 - RNase adapter RapZ, at 146,548 to 147,402
_RS12385
EX31_RS12390: EX31_RS12390 - PTS IIA-like nitrogen regulatory protein PtsN, at 147,470 to 147,940
_RS12390
EX31_RS12395: EX31_RS12395 - ribosome hibernation promoting factor, at 148,051 to 148,338
_RS12395
EX31_RS12400: EX31_RS12400 - RNA polymerase factor sigma-54, at 148,362 to 149,795
_RS12400
EX31_RS12405: EX31_RS12405 - LPS export ABC transporter ATP-binding protein, at 149,897 to 150,622
_RS12405
EX31_RS12410: EX31_RS12410 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 150,629 to 151,186
_RS12410
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 147.472 kb on - strand at 147.573 kb on - strand, within EX31_RS12390 at 147.578 kb on - strand, within EX31_RS12390 at 147.593 kb on - strand, within EX31_RS12390 at 147.929 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 147.979 kb on - strand at 148.027 kb on - strand at 148.027 kb on - strand at 148.027 kb on - strand at 148.027 kb on - strand at 148.027 kb on - strand at 148.042 kb on - strand at 148.042 kb on - strand at 148.042 kb on - strand at 148.075 kb on - strand at 148.075 kb on - strand at 148.075 kb on - strand at 148.081 kb on - strand, within EX31_RS12395 at 148.081 kb on - strand, within EX31_RS12395 at 148.102 kb on - strand, within EX31_RS12395 at 148.102 kb on - strand, within EX31_RS12395 at 148.102 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.128 kb on - strand, within EX31_RS12395 at 148.131 kb on + strand, within EX31_RS12395 at 148.132 kb on - strand, within EX31_RS12395 at 148.132 kb on - strand, within EX31_RS12395 at 148.132 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.157 kb on - strand, within EX31_RS12395 at 148.193 kb on - strand, within EX31_RS12395 at 148.226 kb on + strand, within EX31_RS12395 at 148.226 kb on + strand, within EX31_RS12395 at 148.226 kb on + strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.227 kb on - strand, within EX31_RS12395 at 148.237 kb on - strand, within EX31_RS12395 at 148.251 kb on - strand, within EX31_RS12395 at 148.264 kb on - strand, within EX31_RS12395 at 148.339 kb on - strand at 148.339 kb on - strand at 148.339 kb on - strand at 148.339 kb on - strand at 148.368 kb on + strand at 148.369 kb on - strand at 148.369 kb on - strand at 148.369 kb on - strand at 148.369 kb on - strand at 148.369 kb on - strand at 148.376 kb on + strand at 148.376 kb on + strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.377 kb on - strand at 148.442 kb on + strand at 148.443 kb on - strand at 148.471 kb on - strand at 148.471 kb on - strand at 148.595 kb on - strand, within EX31_RS12400 at 148.689 kb on - strand, within EX31_RS12400 at 148.703 kb on + strand, within EX31_RS12400 at 148.704 kb on - strand, within EX31_RS12400 at 148.704 kb on - strand, within EX31_RS12400 at 148.899 kb on - strand, within EX31_RS12400 at 148.936 kb on - strand, within EX31_RS12400 at 148.936 kb on - strand, within EX31_RS12400 at 148.936 kb on - strand, within EX31_RS12400 at 148.958 kb on + strand, within EX31_RS12400 at 148.985 kb on - strand, within EX31_RS12400 at 148.985 kb on - strand, within EX31_RS12400 at 149.007 kb on - strand, within EX31_RS12400 at 149.007 kb on - strand, within EX31_RS12400 at 149.007 kb on - strand, within EX31_RS12400 at 149.007 kb on - strand, within EX31_RS12400 at 149.064 kb on - strand, within EX31_RS12400 at 149.141 kb on + strand, within EX31_RS12400 at 149.142 kb on - strand, within EX31_RS12400 at 149.142 kb on - strand, within EX31_RS12400 at 149.259 kb on - strand, within EX31_RS12400 at 149.259 kb on - strand, within EX31_RS12400 at 149.263 kb on - strand, within EX31_RS12400 at 149.263 kb on - strand, within EX31_RS12400 at 149.713 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.795 kb on + strand at 149.795 kb on + strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.796 kb on - strand at 149.806 kb on - strand at 149.863 kb on + strand at 149.863 kb on + strand at 149.863 kb on + strand at 149.863 kb on + strand at 149.863 kb on + strand at 149.863 kb on + strand at 149.863 kb on + strand at 149.863 kb on + strand at 149.864 kb on - strand at 149.864 kb on - strand at 149.864 kb on - strand at 149.864 kb on - strand at 149.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 147,472 - +0.1 147,573 - EX31_RS12390 0.22 +1.9 147,578 - EX31_RS12390 0.23 -0.0 147,593 - EX31_RS12390 0.26 +0.1 147,929 - -1.6 147,973 - +0.2 147,973 - -0.3 147,973 - -0.9 147,979 - +0.1 147,979 - -1.5 147,979 - -0.3 147,979 - -0.1 147,979 - -1.0 147,979 - +1.3 147,979 - +0.1 147,979 - -0.1 147,979 - +0.4 148,027 - -0.4 148,027 - +0.2 148,027 - +0.1 148,027 - -0.2 148,027 - -0.9 148,042 - +0.1 148,042 - -1.1 148,042 - -1.0 148,075 - +0.2 148,075 - -1.1 148,075 - +1.4 148,081 - EX31_RS12395 0.10 -0.4 148,081 - EX31_RS12395 0.10 +0.3 148,102 - EX31_RS12395 0.18 -0.2 148,102 - EX31_RS12395 0.18 -0.3 148,102 - EX31_RS12395 0.18 -0.1 148,128 - EX31_RS12395 0.27 -0.6 148,128 - EX31_RS12395 0.27 +0.2 148,128 - EX31_RS12395 0.27 -1.5 148,128 - EX31_RS12395 0.27 -0.2 148,128 - EX31_RS12395 0.27 +0.7 148,128 - EX31_RS12395 0.27 +1.1 148,128 - EX31_RS12395 0.27 -0.3 148,128 - EX31_RS12395 0.27 -0.9 148,128 - EX31_RS12395 0.27 -0.4 148,128 - EX31_RS12395 0.27 +0.2 148,128 - EX31_RS12395 0.27 -0.3 148,128 - EX31_RS12395 0.27 +0.1 148,128 - EX31_RS12395 0.27 -0.4 148,128 - EX31_RS12395 0.27 -0.0 148,128 - EX31_RS12395 0.27 +0.3 148,128 - EX31_RS12395 0.27 -0.8 148,128 - EX31_RS12395 0.27 -0.6 148,128 - EX31_RS12395 0.27 +1.1 148,128 - EX31_RS12395 0.27 +1.2 148,128 - EX31_RS12395 0.27 +0.4 148,128 - EX31_RS12395 0.27 +1.5 148,131 + EX31_RS12395 0.28 +0.7 148,132 - EX31_RS12395 0.28 +0.5 148,132 - EX31_RS12395 0.28 +0.6 148,132 - EX31_RS12395 0.28 +0.3 148,157 - EX31_RS12395 0.37 +0.0 148,157 - EX31_RS12395 0.37 +1.0 148,157 - EX31_RS12395 0.37 -0.1 148,157 - EX31_RS12395 0.37 +1.2 148,157 - EX31_RS12395 0.37 +1.6 148,157 - EX31_RS12395 0.37 +1.7 148,157 - EX31_RS12395 0.37 -0.6 148,157 - EX31_RS12395 0.37 -1.0 148,157 - EX31_RS12395 0.37 +0.4 148,193 - EX31_RS12395 0.49 -0.1 148,226 + EX31_RS12395 0.61 +1.6 148,226 + EX31_RS12395 0.61 +0.7 148,226 + EX31_RS12395 0.61 -0.8 148,227 - EX31_RS12395 0.61 -0.6 148,227 - EX31_RS12395 0.61 +0.1 148,227 - EX31_RS12395 0.61 +0.5 148,227 - EX31_RS12395 0.61 -0.7 148,227 - EX31_RS12395 0.61 +0.6 148,227 - EX31_RS12395 0.61 -0.1 148,227 - EX31_RS12395 0.61 +0.2 148,227 - EX31_RS12395 0.61 +0.6 148,227 - EX31_RS12395 0.61 +0.5 148,227 - EX31_RS12395 0.61 +0.4 148,227 - EX31_RS12395 0.61 +0.1 148,227 - EX31_RS12395 0.61 -0.6 148,227 - EX31_RS12395 0.61 -0.5 148,227 - EX31_RS12395 0.61 +0.1 148,227 - EX31_RS12395 0.61 -0.3 148,227 - EX31_RS12395 0.61 -0.3 148,227 - EX31_RS12395 0.61 -0.4 148,227 - EX31_RS12395 0.61 -0.8 148,227 - EX31_RS12395 0.61 +0.0 148,227 - EX31_RS12395 0.61 +0.3 148,227 - EX31_RS12395 0.61 +1.2 148,227 - EX31_RS12395 0.61 +0.1 148,237 - EX31_RS12395 0.65 -2.2 148,251 - EX31_RS12395 0.69 +0.1 148,264 - EX31_RS12395 0.74 +0.2 148,339 - +0.3 148,339 - +0.1 148,339 - +0.0 148,339 - -0.4 148,368 + -1.7 148,369 - -0.6 148,369 - -0.7 148,369 - +0.6 148,369 - -2.3 148,369 - -0.1 148,376 + -1.7 148,376 + +0.6 148,377 - -1.4 148,377 - -1.7 148,377 - -1.8 148,377 - -0.7 148,377 - -0.7 148,442 + +1.9 148,443 - +1.9 148,471 - +1.9 148,471 - +1.9 148,595 - EX31_RS12400 0.16 +1.3 148,689 - EX31_RS12400 0.23 +0.6 148,703 + EX31_RS12400 0.24 +2.9 148,704 - EX31_RS12400 0.24 +0.3 148,704 - EX31_RS12400 0.24 +1.3 148,899 - EX31_RS12400 0.37 +0.6 148,936 - EX31_RS12400 0.40 +1.3 148,936 - EX31_RS12400 0.40 +0.3 148,936 - EX31_RS12400 0.40 +0.3 148,958 + EX31_RS12400 0.42 +1.9 148,985 - EX31_RS12400 0.43 +1.9 148,985 - EX31_RS12400 0.43 +2.9 149,007 - EX31_RS12400 0.45 +0.6 149,007 - EX31_RS12400 0.45 +1.9 149,007 - EX31_RS12400 0.45 +1.9 149,007 - EX31_RS12400 0.45 +0.9 149,064 - EX31_RS12400 0.49 +1.9 149,141 + EX31_RS12400 0.54 +0.9 149,142 - EX31_RS12400 0.54 +0.6 149,142 - EX31_RS12400 0.54 +2.9 149,259 - EX31_RS12400 0.63 +0.1 149,259 - EX31_RS12400 0.63 +1.9 149,263 - EX31_RS12400 0.63 +0.9 149,263 - EX31_RS12400 0.63 +0.9 149,713 - +2.9 149,740 - -0.3 149,740 - +3.5 149,740 - +2.9 149,740 - -0.3 149,795 + +0.3 149,795 + +0.1 149,796 - -2.0 149,796 - -0.8 149,796 - -1.9 149,796 - +0.5 149,796 - -1.5 149,796 - +0.8 149,796 - -2.5 149,796 - -0.6 149,796 - -1.9 149,796 - -2.6 149,796 - -0.7 149,796 - -2.0 149,796 - -1.5 149,806 - -0.3 149,863 + -0.8 149,863 + +0.3 149,863 + -1.3 149,863 + -3.1 149,863 + -2.6 149,863 + -3.2 149,863 + +1.4 149,863 + -3.2 149,864 - +0.6 149,864 - +0.6 149,864 - +0.8 149,864 - +1.0 149,864 - -0.2
Or see this region's nucleotide sequence