Strain Fitness in Rahnella sp. WP5 around EX31_RS11150

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11145 and EX31_RS11150 are separated by 229 nucleotidesEX31_RS11150 and EX31_RS11155 overlap by 27 nucleotides EX31_RS11145: EX31_RS11145 - LLM class flavin-dependent oxidoreductase, at 160,788 to 161,813 _RS11145 EX31_RS11150: EX31_RS11150 - efflux transporter periplasmic adaptor subunit, at 162,043 to 162,312 _RS11150 EX31_RS11155: EX31_RS11155 - DHA2 family efflux MFS transporter permease subunit, at 162,286 to 163,668 _RS11155 Position (kb) 162 163Strain fitness (log2 ratio) -2 -1 0 1 2at 161.070 kb on - strand, within EX31_RS11145at 161.097 kb on - strand, within EX31_RS11145at 161.097 kb on - strand, within EX31_RS11145at 161.267 kb on + strand, within EX31_RS11145at 161.268 kb on - strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.548 kb on + strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.549 kb on - strand, within EX31_RS11145at 161.734 kb on - strandat 161.875 kb on + strandat 161.887 kb on + strandat 161.888 kb on - strandat 161.888 kb on - strandat 161.933 kb on - strandat 161.933 kb on - strandat 161.933 kb on - strandat 161.953 kb on + strandat 162.044 kb on + strandat 162.078 kb on + strand, within EX31_RS11150at 162.078 kb on + strand, within EX31_RS11150at 162.079 kb on - strand, within EX31_RS11150at 162.165 kb on - strand, within EX31_RS11150at 162.171 kb on + strand, within EX31_RS11150at 162.172 kb on - strand, within EX31_RS11150at 162.209 kb on + strand, within EX31_RS11150at 162.210 kb on - strand, within EX31_RS11150at 162.265 kb on - strand, within EX31_RS11150at 162.306 kb on + strandat 162.306 kb on + strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.307 kb on - strandat 162.356 kb on + strandat 162.356 kb on + strandat 162.356 kb on + strandat 162.357 kb on - strandat 162.519 kb on + strand, within EX31_RS11155at 162.520 kb on - strand, within EX31_RS11155at 162.520 kb on - strand, within EX31_RS11155at 162.546 kb on - strand, within EX31_RS11155at 162.736 kb on - strand, within EX31_RS11155at 162.736 kb on - strand, within EX31_RS11155at 162.784 kb on + strand, within EX31_RS11155at 162.856 kb on - strand, within EX31_RS11155at 162.856 kb on - strand, within EX31_RS11155at 162.874 kb on + strand, within EX31_RS11155at 162.874 kb on + strand, within EX31_RS11155at 162.876 kb on + strand, within EX31_RS11155at 162.967 kb on + strand, within EX31_RS11155at 163.134 kb on + strand, within EX31_RS11155at 163.135 kb on - strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.136 kb on + strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.137 kb on - strand, within EX31_RS11155at 163.248 kb on + strand, within EX31_RS11155at 163.248 kb on + strand, within EX31_RS11155at 163.264 kb on - strand, within EX31_RS11155at 163.264 kb on - strand, within EX31_RS11155at 163.271 kb on + strand, within EX31_RS11155at 163.272 kb on - strand, within EX31_RS11155at 163.304 kb on + strand, within EX31_RS11155at 163.304 kb on + strand, within EX31_RS11155at 163.305 kb on - strand, within EX31_RS11155

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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161,070 - EX31_RS11145 0.27 -0.1
161,097 - EX31_RS11145 0.30 +0.1
161,097 - EX31_RS11145 0.30 +0.4
161,267 + EX31_RS11145 0.47 +0.8
161,268 - EX31_RS11145 0.47 +0.8
161,548 + EX31_RS11145 0.74 +1.8
161,548 + EX31_RS11145 0.74 +1.6
161,548 + EX31_RS11145 0.74 +0.1
161,548 + EX31_RS11145 0.74 -0.0
161,548 + EX31_RS11145 0.74 -0.1
161,549 - EX31_RS11145 0.74 +0.0
161,549 - EX31_RS11145 0.74 -0.3
161,549 - EX31_RS11145 0.74 +0.7
161,549 - EX31_RS11145 0.74 +0.6
161,549 - EX31_RS11145 0.74 +0.9
161,549 - EX31_RS11145 0.74 +0.3
161,549 - EX31_RS11145 0.74 +0.5
161,549 - EX31_RS11145 0.74 -0.1
161,549 - EX31_RS11145 0.74 +0.1
161,549 - EX31_RS11145 0.74 +0.5
161,734 - -0.5
161,875 + +1.8
161,887 + -1.0
161,888 - -0.3
161,888 - +0.5
161,933 - +1.4
161,933 - +0.2
161,933 - -0.2
161,953 + -0.4
162,044 + -0.5
162,078 + EX31_RS11150 0.13 +0.4
162,078 + EX31_RS11150 0.13 -0.3
162,079 - EX31_RS11150 0.13 -2.4
162,165 - EX31_RS11150 0.45 +1.0
162,171 + EX31_RS11150 0.47 -0.1
162,172 - EX31_RS11150 0.48 -0.9
162,209 + EX31_RS11150 0.61 -2.0
162,210 - EX31_RS11150 0.62 -1.8
162,265 - EX31_RS11150 0.82 -1.0
162,306 + -0.3
162,306 + -0.4
162,307 - +0.2
162,307 - -0.1
162,307 - +1.7
162,307 - +1.2
162,307 - +0.2
162,356 + -1.8
162,356 + +0.6
162,356 + +0.5
162,357 - -1.0
162,519 + EX31_RS11155 0.17 -0.2
162,520 - EX31_RS11155 0.17 +0.3
162,520 - EX31_RS11155 0.17 +0.3
162,546 - EX31_RS11155 0.19 -0.1
162,736 - EX31_RS11155 0.33 -0.8
162,736 - EX31_RS11155 0.33 -0.9
162,784 + EX31_RS11155 0.36 -1.6
162,856 - EX31_RS11155 0.41 -1.4
162,856 - EX31_RS11155 0.41 +1.1
162,874 + EX31_RS11155 0.43 -1.1
162,874 + EX31_RS11155 0.43 -0.4
162,876 + EX31_RS11155 0.43 +0.6
162,967 + EX31_RS11155 0.49 +1.4
163,134 + EX31_RS11155 0.61 -1.9
163,135 - EX31_RS11155 0.61 -0.2
163,136 + EX31_RS11155 0.61 +0.2
163,136 + EX31_RS11155 0.61 +0.3
163,136 + EX31_RS11155 0.61 -0.8
163,136 + EX31_RS11155 0.61 -0.0
163,137 - EX31_RS11155 0.62 -0.0
163,137 - EX31_RS11155 0.62 +0.3
163,137 - EX31_RS11155 0.62 -0.8
163,137 - EX31_RS11155 0.62 -0.6
163,248 + EX31_RS11155 0.70 -2.0
163,248 + EX31_RS11155 0.70 +1.1
163,264 - EX31_RS11155 0.71 -1.1
163,264 - EX31_RS11155 0.71 -0.8
163,271 + EX31_RS11155 0.71 +0.3
163,272 - EX31_RS11155 0.71 -0.0
163,304 + EX31_RS11155 0.74 +0.2
163,304 + EX31_RS11155 0.74 +1.0
163,305 - EX31_RS11155 0.74 +0.5

Or see this region's nucleotide sequence