Strain Fitness in Rahnella sp. WP5 around EX31_RS10815

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10810 and EX31_RS10815 are separated by 163 nucleotidesEX31_RS10815 and EX31_RS10820 are separated by 118 nucleotides EX31_RS10810: EX31_RS10810 - AraC family transcriptional regulator, at 83,531 to 84,472 _RS10810 EX31_RS10815: EX31_RS10815 - oxidoreductase, at 84,636 to 85,469 _RS10815 EX31_RS10820: EX31_RS10820 - magnesium/cobalt transporter CorA, at 85,588 to 86,595 _RS10820 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2 3at 83.668 kb on - strand, within EX31_RS10810at 83.672 kb on + strand, within EX31_RS10810at 83.673 kb on - strand, within EX31_RS10810at 83.673 kb on - strand, within EX31_RS10810at 83.673 kb on - strand, within EX31_RS10810at 83.720 kb on + strand, within EX31_RS10810at 83.721 kb on - strand, within EX31_RS10810at 83.721 kb on - strand, within EX31_RS10810at 83.755 kb on - strand, within EX31_RS10810at 83.964 kb on + strand, within EX31_RS10810at 83.968 kb on - strand, within EX31_RS10810at 83.968 kb on - strand, within EX31_RS10810at 83.968 kb on - strand, within EX31_RS10810at 83.968 kb on - strand, within EX31_RS10810at 84.039 kb on - strand, within EX31_RS10810at 84.041 kb on + strand, within EX31_RS10810at 84.041 kb on + strand, within EX31_RS10810at 84.041 kb on + strand, within EX31_RS10810at 84.042 kb on - strand, within EX31_RS10810at 84.042 kb on - strand, within EX31_RS10810at 84.083 kb on - strand, within EX31_RS10810at 84.083 kb on - strand, within EX31_RS10810at 84.114 kb on + strand, within EX31_RS10810at 84.114 kb on + strand, within EX31_RS10810at 84.114 kb on + strand, within EX31_RS10810at 84.115 kb on - strand, within EX31_RS10810at 84.115 kb on - strand, within EX31_RS10810at 84.244 kb on - strand, within EX31_RS10810at 84.244 kb on - strand, within EX31_RS10810at 84.259 kb on - strand, within EX31_RS10810at 84.259 kb on - strand, within EX31_RS10810at 84.264 kb on + strand, within EX31_RS10810at 84.264 kb on + strand, within EX31_RS10810at 84.264 kb on + strand, within EX31_RS10810at 84.264 kb on + strand, within EX31_RS10810at 84.265 kb on - strand, within EX31_RS10810at 84.265 kb on - strand, within EX31_RS10810at 84.265 kb on - strand, within EX31_RS10810at 84.274 kb on + strand, within EX31_RS10810at 84.274 kb on + strand, within EX31_RS10810at 84.274 kb on + strand, within EX31_RS10810at 84.275 kb on - strand, within EX31_RS10810at 84.278 kb on + strand, within EX31_RS10810at 84.327 kb on + strand, within EX31_RS10810at 84.328 kb on - strand, within EX31_RS10810at 84.366 kb on - strand, within EX31_RS10810at 84.399 kb on + strandat 84.399 kb on + strandat 84.399 kb on + strandat 84.416 kb on - strandat 84.472 kb on + strandat 84.473 kb on - strandat 84.486 kb on + strandat 84.487 kb on - strandat 84.487 kb on - strandat 84.635 kb on + strandat 84.789 kb on - strand, within EX31_RS10815at 84.911 kb on + strand, within EX31_RS10815at 85.019 kb on + strand, within EX31_RS10815at 85.028 kb on + strand, within EX31_RS10815at 85.028 kb on + strand, within EX31_RS10815at 85.028 kb on + strand, within EX31_RS10815at 85.029 kb on - strand, within EX31_RS10815at 85.034 kb on + strand, within EX31_RS10815at 85.080 kb on + strand, within EX31_RS10815at 85.081 kb on - strand, within EX31_RS10815at 85.095 kb on - strand, within EX31_RS10815at 85.480 kb on + strandat 85.480 kb on + strandat 85.481 kb on - strandat 85.639 kb on - strandat 85.759 kb on + strand, within EX31_RS10820at 85.759 kb on + strand, within EX31_RS10820at 85.759 kb on + strand, within EX31_RS10820at 85.760 kb on - strand, within EX31_RS10820at 85.761 kb on + strand, within EX31_RS10820at 85.762 kb on - strand, within EX31_RS10820at 85.762 kb on - strand, within EX31_RS10820at 85.762 kb on - strand, within EX31_RS10820at 85.979 kb on - strand, within EX31_RS10820at 86.026 kb on - strand, within EX31_RS10820at 86.026 kb on - strand, within EX31_RS10820at 86.026 kb on - strand, within EX31_RS10820at 86.038 kb on + strand, within EX31_RS10820at 86.038 kb on + strand, within EX31_RS10820at 86.038 kb on + strand, within EX31_RS10820at 86.039 kb on - strand, within EX31_RS10820at 86.047 kb on + strand, within EX31_RS10820at 86.048 kb on - strand, within EX31_RS10820at 86.142 kb on + strand, within EX31_RS10820at 86.173 kb on + strand, within EX31_RS10820at 86.173 kb on + strand, within EX31_RS10820at 86.175 kb on + strand, within EX31_RS10820at 86.175 kb on + strand, within EX31_RS10820at 86.176 kb on - strand, within EX31_RS10820at 86.176 kb on - strand, within EX31_RS10820at 86.176 kb on - strand, within EX31_RS10820at 86.229 kb on + strand, within EX31_RS10820at 86.230 kb on - strand, within EX31_RS10820at 86.230 kb on - strand, within EX31_RS10820at 86.230 kb on - strand, within EX31_RS10820at 86.255 kb on - strand, within EX31_RS10820at 86.287 kb on + strand, within EX31_RS10820at 86.288 kb on - strand, within EX31_RS10820

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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83,668 - EX31_RS10810 0.15 -0.8
83,672 + EX31_RS10810 0.15 +2.0
83,673 - EX31_RS10810 0.15 +0.2
83,673 - EX31_RS10810 0.15 -0.8
83,673 - EX31_RS10810 0.15 -0.5
83,720 + EX31_RS10810 0.20 +0.3
83,721 - EX31_RS10810 0.20 -0.3
83,721 - EX31_RS10810 0.20 +0.7
83,755 - EX31_RS10810 0.24 -0.7
83,964 + EX31_RS10810 0.46 +0.9
83,968 - EX31_RS10810 0.46 +0.0
83,968 - EX31_RS10810 0.46 -0.1
83,968 - EX31_RS10810 0.46 +0.4
83,968 - EX31_RS10810 0.46 -0.1
84,039 - EX31_RS10810 0.54 -0.3
84,041 + EX31_RS10810 0.54 +1.1
84,041 + EX31_RS10810 0.54 +1.1
84,041 + EX31_RS10810 0.54 +0.6
84,042 - EX31_RS10810 0.54 -0.7
84,042 - EX31_RS10810 0.54 -0.4
84,083 - EX31_RS10810 0.59 +0.8
84,083 - EX31_RS10810 0.59 -1.2
84,114 + EX31_RS10810 0.62 +0.1
84,114 + EX31_RS10810 0.62 -0.5
84,114 + EX31_RS10810 0.62 -1.3
84,115 - EX31_RS10810 0.62 -0.5
84,115 - EX31_RS10810 0.62 -1.6
84,244 - EX31_RS10810 0.76 -2.4
84,244 - EX31_RS10810 0.76 -0.2
84,259 - EX31_RS10810 0.77 -1.3
84,259 - EX31_RS10810 0.77 +1.0
84,264 + EX31_RS10810 0.78 -1.4
84,264 + EX31_RS10810 0.78 -0.9
84,264 + EX31_RS10810 0.78 +0.5
84,264 + EX31_RS10810 0.78 -0.8
84,265 - EX31_RS10810 0.78 -0.7
84,265 - EX31_RS10810 0.78 +1.0
84,265 - EX31_RS10810 0.78 -1.3
84,274 + EX31_RS10810 0.79 +0.7
84,274 + EX31_RS10810 0.79 +0.4
84,274 + EX31_RS10810 0.79 +0.2
84,275 - EX31_RS10810 0.79 +1.1
84,278 + EX31_RS10810 0.79 -1.8
84,327 + EX31_RS10810 0.85 -0.0
84,328 - EX31_RS10810 0.85 -1.4
84,366 - EX31_RS10810 0.89 +2.8
84,399 + -0.6
84,399 + -0.9
84,399 + +0.8
84,416 - -0.3
84,472 + +1.1
84,473 - -0.8
84,486 + +0.9
84,487 - +0.4
84,487 - +1.5
84,635 + +0.7
84,789 - EX31_RS10815 0.18 -2.0
84,911 + EX31_RS10815 0.33 -0.1
85,019 + EX31_RS10815 0.46 +0.4
85,028 + EX31_RS10815 0.47 -0.7
85,028 + EX31_RS10815 0.47 +0.4
85,028 + EX31_RS10815 0.47 -2.0
85,029 - EX31_RS10815 0.47 -1.3
85,034 + EX31_RS10815 0.48 -1.3
85,080 + EX31_RS10815 0.53 -0.2
85,081 - EX31_RS10815 0.53 -0.5
85,095 - EX31_RS10815 0.55 -0.8
85,480 + +0.9
85,480 + +0.6
85,481 - -0.9
85,639 - +0.3
85,759 + EX31_RS10820 0.17 +0.1
85,759 + EX31_RS10820 0.17 +0.3
85,759 + EX31_RS10820 0.17 +0.1
85,760 - EX31_RS10820 0.17 +1.0
85,761 + EX31_RS10820 0.17 -0.2
85,762 - EX31_RS10820 0.17 -0.0
85,762 - EX31_RS10820 0.17 +0.2
85,762 - EX31_RS10820 0.17 -0.5
85,979 - EX31_RS10820 0.39 +1.2
86,026 - EX31_RS10820 0.43 +1.5
86,026 - EX31_RS10820 0.43 +0.5
86,026 - EX31_RS10820 0.43 -0.8
86,038 + EX31_RS10820 0.45 -1.7
86,038 + EX31_RS10820 0.45 +0.5
86,038 + EX31_RS10820 0.45 -0.2
86,039 - EX31_RS10820 0.45 +0.3
86,047 + EX31_RS10820 0.46 +0.7
86,048 - EX31_RS10820 0.46 -1.6
86,142 + EX31_RS10820 0.55 -0.7
86,173 + EX31_RS10820 0.58 -1.2
86,173 + EX31_RS10820 0.58 +1.1
86,175 + EX31_RS10820 0.58 +0.1
86,175 + EX31_RS10820 0.58 +2.6
86,176 - EX31_RS10820 0.58 -1.3
86,176 - EX31_RS10820 0.58 -0.4
86,176 - EX31_RS10820 0.58 +0.6
86,229 + EX31_RS10820 0.64 +0.5
86,230 - EX31_RS10820 0.64 -1.4
86,230 - EX31_RS10820 0.64 +1.1
86,230 - EX31_RS10820 0.64 +0.5
86,255 - EX31_RS10820 0.66 -0.4
86,287 + EX31_RS10820 0.69 -0.5
86,288 - EX31_RS10820 0.69 -1.5

Or see this region's nucleotide sequence