Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10690 and EX31_RS10695 are separated by 153 nucleotides EX31_RS10695 and EX31_RS10700 are separated by 101 nucleotides EX31_RS10700 and EX31_RS10705 are separated by 330 nucleotides
EX31_RS10690: EX31_RS10690 - sodium:proton antiporter, at 55,483 to 56,862
_RS10690
EX31_RS10695: EX31_RS10695 - EthD family reductase, at 57,016 to 57,321
_RS10695
EX31_RS10700: EX31_RS10700 - hypothetical protein, at 57,423 to 57,749
_RS10700
EX31_RS10705: EX31_RS10705 - adhesin, at 58,080 to 59,216
_RS10705
Position (kb) 57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.515 kb on - strand, within EX31_RS10690 at 56.521 kb on - strand, within EX31_RS10690 at 56.525 kb on + strand, within EX31_RS10690 at 56.525 kb on + strand, within EX31_RS10690 at 56.525 kb on + strand, within EX31_RS10690 at 56.526 kb on - strand, within EX31_RS10690 at 56.526 kb on - strand, within EX31_RS10690 at 56.560 kb on + strand, within EX31_RS10690 at 56.561 kb on - strand, within EX31_RS10690 at 56.641 kb on - strand, within EX31_RS10690 at 56.644 kb on + strand, within EX31_RS10690 at 56.645 kb on - strand, within EX31_RS10690 at 56.645 kb on - strand, within EX31_RS10690 at 56.645 kb on - strand, within EX31_RS10690 at 56.760 kb on - strand at 56.761 kb on + strand at 56.761 kb on + strand at 56.762 kb on - strand at 56.762 kb on - strand at 56.814 kb on + strand at 56.814 kb on + strand at 56.815 kb on - strand at 56.815 kb on - strand at 56.822 kb on - strand at 56.866 kb on + strand at 56.867 kb on - strand at 56.867 kb on - strand at 56.876 kb on + strand at 56.877 kb on - strand at 56.877 kb on - strand at 56.888 kb on + strand at 56.888 kb on + strand at 56.897 kb on + strand at 56.898 kb on - strand at 56.900 kb on + strand at 56.900 kb on + strand at 56.900 kb on + strand at 56.900 kb on + strand at 56.901 kb on - strand at 56.901 kb on - strand at 56.901 kb on - strand at 56.901 kb on - strand at 56.906 kb on + strand at 56.930 kb on + strand at 56.934 kb on + strand at 56.935 kb on - strand at 56.960 kb on + strand at 56.960 kb on + strand at 57.022 kb on - strand at 57.026 kb on - strand at 57.045 kb on + strand at 57.074 kb on - strand, within EX31_RS10695 at 57.093 kb on - strand, within EX31_RS10695 at 57.133 kb on + strand, within EX31_RS10695 at 57.134 kb on - strand, within EX31_RS10695 at 57.144 kb on + strand, within EX31_RS10695 at 57.196 kb on - strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.267 kb on - strand, within EX31_RS10695 at 57.358 kb on - strand at 57.403 kb on - strand at 57.404 kb on + strand at 57.405 kb on - strand at 57.405 kb on - strand at 57.425 kb on - strand at 57.436 kb on - strand at 57.573 kb on - strand, within EX31_RS10700 at 57.579 kb on - strand, within EX31_RS10700 at 57.579 kb on - strand, within EX31_RS10700 at 57.579 kb on - strand, within EX31_RS10700 at 57.647 kb on + strand, within EX31_RS10700 at 57.651 kb on + strand, within EX31_RS10700 at 57.895 kb on - strand at 57.913 kb on + strand at 57.914 kb on - strand at 58.148 kb on + strand at 58.223 kb on + strand, within EX31_RS10705 at 58.224 kb on - strand, within EX31_RS10705 at 58.240 kb on + strand, within EX31_RS10705 at 58.241 kb on - strand, within EX31_RS10705 at 58.287 kb on - strand, within EX31_RS10705 at 58.327 kb on + strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.367 kb on - strand, within EX31_RS10705 at 58.374 kb on + strand, within EX31_RS10705 at 58.374 kb on + strand, within EX31_RS10705 at 58.375 kb on - strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.389 kb on - strand, within EX31_RS10705 at 58.389 kb on - strand, within EX31_RS10705 at 58.389 kb on - strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.393 kb on - strand, within EX31_RS10705 at 58.393 kb on - strand, within EX31_RS10705 at 58.393 kb on - strand, within EX31_RS10705 at 58.395 kb on + strand, within EX31_RS10705 at 58.395 kb on + strand, within EX31_RS10705 at 58.395 kb on + strand, within EX31_RS10705 at 58.396 kb on - strand, within EX31_RS10705 at 58.473 kb on - strand, within EX31_RS10705 at 58.511 kb on + strand, within EX31_RS10705 at 58.513 kb on + strand, within EX31_RS10705 at 58.514 kb on - strand, within EX31_RS10705 at 58.514 kb on - strand, within EX31_RS10705 at 58.514 kb on - strand, within EX31_RS10705 at 58.628 kb on + strand, within EX31_RS10705 at 58.650 kb on - strand, within EX31_RS10705
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 56,515 - EX31_RS10690 0.75 +1.9 56,521 - EX31_RS10690 0.75 +0.3 56,525 + EX31_RS10690 0.76 +0.0 56,525 + EX31_RS10690 0.76 -0.5 56,525 + EX31_RS10690 0.76 -0.2 56,526 - EX31_RS10690 0.76 -0.7 56,526 - EX31_RS10690 0.76 -0.0 56,560 + EX31_RS10690 0.78 -1.7 56,561 - EX31_RS10690 0.78 -0.2 56,641 - EX31_RS10690 0.84 -0.4 56,644 + EX31_RS10690 0.84 -0.4 56,645 - EX31_RS10690 0.84 -0.6 56,645 - EX31_RS10690 0.84 -1.8 56,645 - EX31_RS10690 0.84 +0.9 56,760 - -1.1 56,761 + -0.3 56,761 + +0.8 56,762 - +0.7 56,762 - +0.2 56,814 + +0.8 56,814 + -0.5 56,815 - +0.4 56,815 - +0.2 56,822 - -0.1 56,866 + +1.3 56,867 - +1.1 56,867 - +0.2 56,876 + -0.6 56,877 - -1.4 56,877 - +1.3 56,888 + +0.8 56,888 + -0.3 56,897 + +0.4 56,898 - -0.6 56,900 + +0.6 56,900 + +1.2 56,900 + +0.4 56,900 + +0.3 56,901 - +0.5 56,901 - -0.2 56,901 - -0.6 56,901 - -0.4 56,906 + +0.4 56,930 + +1.2 56,934 + +1.1 56,935 - +0.8 56,960 + -1.0 56,960 + -0.8 57,022 - -0.6 57,026 - +0.4 57,045 + -0.6 57,074 - EX31_RS10695 0.19 +0.2 57,093 - EX31_RS10695 0.25 -1.6 57,133 + EX31_RS10695 0.38 +0.7 57,134 - EX31_RS10695 0.39 +1.1 57,144 + EX31_RS10695 0.42 -0.8 57,196 - EX31_RS10695 0.59 +0.2 57,199 + EX31_RS10695 0.60 -0.5 57,199 + EX31_RS10695 0.60 +1.0 57,199 + EX31_RS10695 0.60 +0.9 57,199 + EX31_RS10695 0.60 +1.3 57,199 + EX31_RS10695 0.60 +1.4 57,199 + EX31_RS10695 0.60 -0.8 57,200 - EX31_RS10695 0.60 +0.6 57,200 - EX31_RS10695 0.60 -0.1 57,200 - EX31_RS10695 0.60 +0.3 57,200 - EX31_RS10695 0.60 +0.1 57,200 - EX31_RS10695 0.60 +0.6 57,267 - EX31_RS10695 0.82 +0.5 57,358 - -0.1 57,403 - -0.2 57,404 + +0.3 57,405 - +0.4 57,405 - +2.0 57,425 - +0.4 57,436 - -0.2 57,573 - EX31_RS10700 0.46 +0.4 57,579 - EX31_RS10700 0.48 +0.4 57,579 - EX31_RS10700 0.48 -0.5 57,579 - EX31_RS10700 0.48 -1.1 57,647 + EX31_RS10700 0.69 -1.0 57,651 + EX31_RS10700 0.70 -1.6 57,895 - +0.2 57,913 + +0.6 57,914 - +0.5 58,148 + -0.2 58,223 + EX31_RS10705 0.13 +1.0 58,224 - EX31_RS10705 0.13 +0.0 58,240 + EX31_RS10705 0.14 -0.5 58,241 - EX31_RS10705 0.14 -1.1 58,287 - EX31_RS10705 0.18 -1.1 58,327 + EX31_RS10705 0.22 -0.1 58,328 - EX31_RS10705 0.22 +0.3 58,328 - EX31_RS10705 0.22 -1.1 58,328 - EX31_RS10705 0.22 -0.3 58,328 - EX31_RS10705 0.22 +0.7 58,328 - EX31_RS10705 0.22 +0.1 58,367 - EX31_RS10705 0.25 +1.0 58,374 + EX31_RS10705 0.26 +1.2 58,374 + EX31_RS10705 0.26 -2.5 58,375 - EX31_RS10705 0.26 +0.2 58,388 + EX31_RS10705 0.27 +0.5 58,388 + EX31_RS10705 0.27 +0.1 58,388 + EX31_RS10705 0.27 +0.9 58,388 + EX31_RS10705 0.27 -0.0 58,389 - EX31_RS10705 0.27 -0.2 58,389 - EX31_RS10705 0.27 +0.3 58,389 - EX31_RS10705 0.27 -0.7 58,392 + EX31_RS10705 0.27 +1.0 58,392 + EX31_RS10705 0.27 +0.9 58,392 + EX31_RS10705 0.27 -0.6 58,392 + EX31_RS10705 0.27 +0.2 58,393 - EX31_RS10705 0.28 -0.8 58,393 - EX31_RS10705 0.28 +0.0 58,393 - EX31_RS10705 0.28 -0.7 58,395 + EX31_RS10705 0.28 +0.3 58,395 + EX31_RS10705 0.28 -1.9 58,395 + EX31_RS10705 0.28 -0.3 58,396 - EX31_RS10705 0.28 +0.9 58,473 - EX31_RS10705 0.35 -0.4 58,511 + EX31_RS10705 0.38 -2.0 58,513 + EX31_RS10705 0.38 -0.5 58,514 - EX31_RS10705 0.38 +0.9 58,514 - EX31_RS10705 0.38 +1.1 58,514 - EX31_RS10705 0.38 +0.2 58,628 + EX31_RS10705 0.48 -0.2 58,650 - EX31_RS10705 0.50 -0.2
Or see this region's nucleotide sequence