Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10320 and EX31_RS10325 overlap by 4 nucleotides EX31_RS10325 and EX31_RS10330 overlap by 17 nucleotides EX31_RS10330 and EX31_RS10335 overlap by 4 nucleotides
EX31_RS10320: EX31_RS10320 - galactonate dehydratase, at 278,067 to 279,215
_RS10320
EX31_RS10325: EX31_RS10325 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 279,212 to 279,829
_RS10325
EX31_RS10330: EX31_RS10330 - 2-dehydro-3-deoxygalactonokinase, at 279,813 to 280,709
_RS10330
EX31_RS10335: EX31_RS10335 - D-galactonate utilization transcriptional regulator DgoR, at 280,706 to 281,404
_RS10335
Position (kb) 279
280 Strain fitness (log2 ratio) -2
-1
0
1 at 278.232 kb on - strand, within EX31_RS10320 at 278.265 kb on - strand, within EX31_RS10320 at 278.265 kb on - strand, within EX31_RS10320 at 278.267 kb on - strand, within EX31_RS10320 at 278.384 kb on - strand, within EX31_RS10320 at 278.453 kb on + strand, within EX31_RS10320 at 278.531 kb on + strand, within EX31_RS10320 at 278.531 kb on + strand, within EX31_RS10320 at 278.531 kb on + strand, within EX31_RS10320 at 278.532 kb on - strand, within EX31_RS10320 at 278.532 kb on - strand, within EX31_RS10320 at 278.532 kb on - strand, within EX31_RS10320 at 278.560 kb on + strand, within EX31_RS10320 at 278.560 kb on + strand, within EX31_RS10320 at 278.560 kb on + strand, within EX31_RS10320 at 278.561 kb on - strand, within EX31_RS10320 at 278.594 kb on + strand, within EX31_RS10320 at 278.594 kb on + strand, within EX31_RS10320 at 278.599 kb on - strand, within EX31_RS10320 at 278.642 kb on + strand, within EX31_RS10320 at 278.642 kb on + strand, within EX31_RS10320 at 278.643 kb on - strand, within EX31_RS10320 at 278.691 kb on - strand, within EX31_RS10320 at 278.754 kb on + strand, within EX31_RS10320 at 278.867 kb on - strand, within EX31_RS10320 at 279.065 kb on - strand, within EX31_RS10320 at 279.065 kb on - strand, within EX31_RS10320 at 279.157 kb on - strand at 279.198 kb on + strand at 279.203 kb on + strand at 279.230 kb on - strand at 279.231 kb on + strand at 279.232 kb on - strand at 279.232 kb on - strand at 279.319 kb on + strand, within EX31_RS10325 at 279.336 kb on + strand, within EX31_RS10325 at 279.421 kb on - strand, within EX31_RS10325 at 279.421 kb on - strand, within EX31_RS10325 at 279.421 kb on - strand, within EX31_RS10325 at 279.565 kb on + strand, within EX31_RS10325 at 279.568 kb on + strand, within EX31_RS10325 at 279.598 kb on + strand, within EX31_RS10325 at 279.599 kb on - strand, within EX31_RS10325 at 279.627 kb on - strand, within EX31_RS10325 at 279.627 kb on - strand, within EX31_RS10325 at 279.946 kb on - strand, within EX31_RS10330 at 279.950 kb on + strand, within EX31_RS10330 at 279.951 kb on - strand, within EX31_RS10330 at 279.951 kb on - strand, within EX31_RS10330 at 280.051 kb on - strand, within EX31_RS10330 at 280.051 kb on - strand, within EX31_RS10330 at 280.051 kb on - strand, within EX31_RS10330 at 280.098 kb on - strand, within EX31_RS10330 at 280.264 kb on - strand, within EX31_RS10330 at 280.271 kb on + strand, within EX31_RS10330 at 280.272 kb on - strand, within EX31_RS10330 at 280.272 kb on - strand, within EX31_RS10330 at 280.272 kb on - strand, within EX31_RS10330 at 280.295 kb on - strand, within EX31_RS10330 at 280.295 kb on - strand, within EX31_RS10330 at 280.316 kb on + strand, within EX31_RS10330 at 280.317 kb on - strand, within EX31_RS10330 at 280.317 kb on - strand, within EX31_RS10330 at 280.317 kb on - strand, within EX31_RS10330 at 280.318 kb on + strand, within EX31_RS10330 at 280.319 kb on - strand, within EX31_RS10330 at 280.329 kb on + strand, within EX31_RS10330 at 280.330 kb on - strand, within EX31_RS10330 at 280.394 kb on + strand, within EX31_RS10330 at 280.435 kb on - strand, within EX31_RS10330 at 280.477 kb on + strand, within EX31_RS10330 at 280.477 kb on + strand, within EX31_RS10330 at 280.554 kb on + strand, within EX31_RS10330 at 280.635 kb on - strand at 280.651 kb on + strand at 280.696 kb on + strand at 280.696 kb on + strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.714 kb on + strand at 280.801 kb on - strand, within EX31_RS10335 at 280.801 kb on - strand, within EX31_RS10335 at 280.801 kb on - strand, within EX31_RS10335 at 280.801 kb on - strand, within EX31_RS10335
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 278,232 - EX31_RS10320 0.14 +0.1 278,265 - EX31_RS10320 0.17 -1.2 278,265 - EX31_RS10320 0.17 +0.5 278,267 - EX31_RS10320 0.17 +0.7 278,384 - EX31_RS10320 0.28 +0.8 278,453 + EX31_RS10320 0.34 -0.0 278,531 + EX31_RS10320 0.40 -0.2 278,531 + EX31_RS10320 0.40 +1.0 278,531 + EX31_RS10320 0.40 +0.3 278,532 - EX31_RS10320 0.40 -0.3 278,532 - EX31_RS10320 0.40 +0.2 278,532 - EX31_RS10320 0.40 +0.6 278,560 + EX31_RS10320 0.43 -0.4 278,560 + EX31_RS10320 0.43 +0.1 278,560 + EX31_RS10320 0.43 -1.4 278,561 - EX31_RS10320 0.43 -0.3 278,594 + EX31_RS10320 0.46 -0.1 278,594 + EX31_RS10320 0.46 +0.2 278,599 - EX31_RS10320 0.46 +1.5 278,642 + EX31_RS10320 0.50 -0.6 278,642 + EX31_RS10320 0.50 -1.5 278,643 - EX31_RS10320 0.50 -1.3 278,691 - EX31_RS10320 0.54 +0.3 278,754 + EX31_RS10320 0.60 -0.8 278,867 - EX31_RS10320 0.70 -1.0 279,065 - EX31_RS10320 0.87 -1.8 279,065 - EX31_RS10320 0.87 -0.9 279,157 - +0.0 279,198 + -0.6 279,203 + -1.0 279,230 - -1.9 279,231 + -0.2 279,232 - -0.4 279,232 - +1.2 279,319 + EX31_RS10325 0.17 +1.7 279,336 + EX31_RS10325 0.20 -2.2 279,421 - EX31_RS10325 0.34 -0.3 279,421 - EX31_RS10325 0.34 +0.2 279,421 - EX31_RS10325 0.34 -1.1 279,565 + EX31_RS10325 0.57 -0.3 279,568 + EX31_RS10325 0.58 -0.2 279,598 + EX31_RS10325 0.62 +0.9 279,599 - EX31_RS10325 0.63 -0.8 279,627 - EX31_RS10325 0.67 +0.0 279,627 - EX31_RS10325 0.67 -1.2 279,946 - EX31_RS10330 0.15 -1.0 279,950 + EX31_RS10330 0.15 +0.1 279,951 - EX31_RS10330 0.15 -0.7 279,951 - EX31_RS10330 0.15 +0.7 280,051 - EX31_RS10330 0.27 -1.5 280,051 - EX31_RS10330 0.27 +0.6 280,051 - EX31_RS10330 0.27 -0.3 280,098 - EX31_RS10330 0.32 -1.7 280,264 - EX31_RS10330 0.50 +0.3 280,271 + EX31_RS10330 0.51 +0.3 280,272 - EX31_RS10330 0.51 -0.4 280,272 - EX31_RS10330 0.51 -1.2 280,272 - EX31_RS10330 0.51 -1.0 280,295 - EX31_RS10330 0.54 -0.5 280,295 - EX31_RS10330 0.54 +0.0 280,316 + EX31_RS10330 0.56 -0.3 280,317 - EX31_RS10330 0.56 +0.1 280,317 - EX31_RS10330 0.56 +0.1 280,317 - EX31_RS10330 0.56 -1.0 280,318 + EX31_RS10330 0.56 -1.6 280,319 - EX31_RS10330 0.56 -0.5 280,329 + EX31_RS10330 0.58 -0.5 280,330 - EX31_RS10330 0.58 -0.0 280,394 + EX31_RS10330 0.65 +0.2 280,435 - EX31_RS10330 0.69 +0.7 280,477 + EX31_RS10330 0.74 -1.6 280,477 + EX31_RS10330 0.74 -0.7 280,554 + EX31_RS10330 0.83 -0.3 280,635 - -0.1 280,651 + +0.3 280,696 + -2.6 280,696 + -0.8 280,697 - -0.6 280,697 - -1.0 280,697 - -0.0 280,697 - +0.9 280,697 - +0.5 280,712 - +0.1 280,712 - -1.8 280,712 - +0.3 280,712 - +0.0 280,712 - -0.2 280,714 + +0.5 280,801 - EX31_RS10335 0.14 +1.7 280,801 - EX31_RS10335 0.14 -0.6 280,801 - EX31_RS10335 0.14 +0.4 280,801 - EX31_RS10335 0.14 +0.6
Or see this region's nucleotide sequence