Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10025 and EX31_RS10030 are separated by 278 nucleotides EX31_RS10030 and EX31_RS10035 are separated by 297 nucleotides EX31_RS10035 and EX31_RS10040 are separated by 80 nucleotides EX31_RS10040 and EX31_RS10045 are separated by 181 nucleotides
EX31_RS10025: EX31_RS10025 - hypothetical protein, at 211,992 to 212,282
_RS10025
EX31_RS10030: EX31_RS10030 - YciY family protein, at 212,561 to 212,743
_RS10030
EX31_RS10035: EX31_RS10035 - cardiolipin synthase, at 213,041 to 214,501
_RS10035
EX31_RS10040: EX31_RS10040 - YciU family protein, at 214,582 to 214,905
_RS10040
EX31_RS10045: EX31_RS10045 - ABC transporter ATP-binding protein, at 215,087 to 216,124
_RS10045
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.081 kb on - strand, within EX31_RS10025 at 212.131 kb on + strand, within EX31_RS10025 at 212.132 kb on - strand, within EX31_RS10025 at 212.164 kb on - strand, within EX31_RS10025 at 212.209 kb on - strand, within EX31_RS10025 at 212.366 kb on - strand at 212.392 kb on - strand at 212.398 kb on + strand at 212.398 kb on + strand at 212.398 kb on + strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.468 kb on + strand at 212.469 kb on - strand at 212.549 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.589 kb on + strand, within EX31_RS10030 at 212.590 kb on - strand, within EX31_RS10030 at 212.638 kb on - strand, within EX31_RS10030 at 212.642 kb on - strand, within EX31_RS10030 at 212.703 kb on - strand, within EX31_RS10030 at 212.836 kb on + strand at 212.837 kb on - strand at 212.837 kb on - strand at 212.948 kb on + strand at 212.949 kb on - strand at 213.000 kb on - strand at 213.173 kb on + strand at 213.203 kb on + strand, within EX31_RS10035 at 213.737 kb on + strand, within EX31_RS10035 at 213.737 kb on + strand, within EX31_RS10035 at 214.000 kb on + strand, within EX31_RS10035 at 214.067 kb on + strand, within EX31_RS10035 at 214.500 kb on - strand at 214.522 kb on + strand at 214.522 kb on + strand at 214.522 kb on + strand at 214.525 kb on + strand at 214.525 kb on + strand at 214.525 kb on + strand at 214.581 kb on + strand at 214.582 kb on - strand at 214.724 kb on + strand, within EX31_RS10040 at 214.724 kb on + strand, within EX31_RS10040 at 214.724 kb on + strand, within EX31_RS10040 at 214.724 kb on + strand, within EX31_RS10040 at 214.724 kb on + strand, within EX31_RS10040 at 214.724 kb on + strand, within EX31_RS10040 at 214.726 kb on + strand, within EX31_RS10040 at 214.727 kb on - strand, within EX31_RS10040 at 214.727 kb on - strand, within EX31_RS10040 at 214.727 kb on - strand, within EX31_RS10040 at 214.827 kb on + strand, within EX31_RS10040 at 214.827 kb on + strand, within EX31_RS10040 at 214.827 kb on + strand, within EX31_RS10040 at 214.827 kb on + strand, within EX31_RS10040 at 214.828 kb on - strand, within EX31_RS10040 at 214.828 kb on - strand, within EX31_RS10040 at 214.836 kb on + strand, within EX31_RS10040 at 214.903 kb on + strand at 214.904 kb on - strand at 214.984 kb on + strand at 214.985 kb on - strand at 214.985 kb on - strand at 214.995 kb on + strand at 214.995 kb on + strand at 214.995 kb on + strand at 215.082 kb on - strand at 215.216 kb on - strand, within EX31_RS10045 at 215.229 kb on - strand, within EX31_RS10045 at 215.314 kb on - strand, within EX31_RS10045 at 215.347 kb on - strand, within EX31_RS10045 at 215.347 kb on - strand, within EX31_RS10045 at 215.347 kb on - strand, within EX31_RS10045 at 215.376 kb on + strand, within EX31_RS10045 at 215.376 kb on + strand, within EX31_RS10045 at 215.377 kb on - strand, within EX31_RS10045 at 215.377 kb on - strand, within EX31_RS10045 at 215.377 kb on - strand, within EX31_RS10045 at 215.408 kb on + strand, within EX31_RS10045
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 212,081 - EX31_RS10025 0.31 -1.1 212,131 + EX31_RS10025 0.48 +1.1 212,132 - EX31_RS10025 0.48 +0.2 212,164 - EX31_RS10025 0.59 -1.1 212,209 - EX31_RS10025 0.75 -1.0 212,366 - -0.0 212,392 - +0.2 212,398 + +0.2 212,398 + +0.4 212,398 + -0.5 212,399 - +0.3 212,399 - +1.1 212,399 - -0.6 212,399 - -0.5 212,399 - -2.2 212,399 - -0.1 212,399 - -0.2 212,399 - +0.7 212,399 - +0.8 212,468 + -1.9 212,469 - -0.4 212,549 - +1.5 212,578 - -0.9 212,578 - -0.2 212,578 - -0.4 212,578 - +1.1 212,578 - +0.2 212,589 + EX31_RS10030 0.15 -0.8 212,590 - EX31_RS10030 0.16 -1.0 212,638 - EX31_RS10030 0.42 -0.1 212,642 - EX31_RS10030 0.44 -1.0 212,703 - EX31_RS10030 0.78 +0.7 212,836 + +0.1 212,837 - +0.5 212,837 - +0.7 212,948 + +0.4 212,949 - -0.0 213,000 - +1.2 213,173 + -0.6 213,203 + EX31_RS10035 0.11 -1.0 213,737 + EX31_RS10035 0.48 +0.3 213,737 + EX31_RS10035 0.48 -0.1 214,000 + EX31_RS10035 0.66 -1.0 214,067 + EX31_RS10035 0.70 -0.5 214,500 - +0.2 214,522 + +1.4 214,522 + +0.1 214,522 + -0.1 214,525 + -0.9 214,525 + +0.1 214,525 + +0.5 214,581 + -0.2 214,582 - -0.2 214,724 + EX31_RS10040 0.44 -1.7 214,724 + EX31_RS10040 0.44 +0.7 214,724 + EX31_RS10040 0.44 +0.5 214,724 + EX31_RS10040 0.44 +0.6 214,724 + EX31_RS10040 0.44 -1.2 214,724 + EX31_RS10040 0.44 +0.3 214,726 + EX31_RS10040 0.44 +1.2 214,727 - EX31_RS10040 0.45 -0.6 214,727 - EX31_RS10040 0.45 +2.3 214,727 - EX31_RS10040 0.45 +1.0 214,827 + EX31_RS10040 0.76 -2.7 214,827 + EX31_RS10040 0.76 -0.6 214,827 + EX31_RS10040 0.76 +0.2 214,827 + EX31_RS10040 0.76 +0.4 214,828 - EX31_RS10040 0.76 -0.1 214,828 - EX31_RS10040 0.76 +1.4 214,836 + EX31_RS10040 0.78 +0.5 214,903 + -1.0 214,904 - +0.3 214,984 + +0.5 214,985 - +0.6 214,985 - -0.5 214,995 + +0.1 214,995 + +1.0 214,995 + -0.5 215,082 - +1.2 215,216 - EX31_RS10045 0.12 -0.0 215,229 - EX31_RS10045 0.14 -0.7 215,314 - EX31_RS10045 0.22 -0.4 215,347 - EX31_RS10045 0.25 +0.0 215,347 - EX31_RS10045 0.25 +1.1 215,347 - EX31_RS10045 0.25 +0.9 215,376 + EX31_RS10045 0.28 +0.8 215,376 + EX31_RS10045 0.28 +1.1 215,377 - EX31_RS10045 0.28 +0.6 215,377 - EX31_RS10045 0.28 -0.8 215,377 - EX31_RS10045 0.28 +0.5 215,408 + EX31_RS10045 0.31 -2.3
Or see this region's nucleotide sequence