Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10015 and EX31_RS10020 are separated by 213 nucleotides EX31_RS10020 and EX31_RS10025 are separated by 163 nucleotides EX31_RS10025 and EX31_RS10030 are separated by 278 nucleotides
EX31_RS10015: EX31_RS10015 - energy transducer TonB, at 210,587 to 211,318
_RS10015
EX31_RS10020: EX31_RS10020 - YciI family protein, at 211,532 to 211,828
_RS10020
EX31_RS10025: EX31_RS10025 - hypothetical protein, at 211,992 to 212,282
_RS10025
EX31_RS10030: EX31_RS10030 - YciY family protein, at 212,561 to 212,743
_RS10030
Position (kb) 211
212 Strain fitness (log2 ratio) -2
-1
0
1 at 210.588 kb on + strand at 211.167 kb on - strand, within EX31_RS10015 at 211.225 kb on - strand, within EX31_RS10015 at 211.319 kb on - strand at 211.362 kb on - strand at 211.392 kb on + strand at 211.393 kb on - strand at 211.393 kb on - strand at 211.451 kb on + strand at 211.452 kb on - strand at 211.452 kb on - strand at 211.455 kb on + strand at 211.455 kb on + strand at 211.455 kb on + strand at 211.455 kb on + strand at 211.455 kb on + strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.460 kb on + strand at 211.460 kb on + strand at 211.460 kb on + strand at 211.461 kb on - strand at 211.539 kb on - strand at 211.543 kb on + strand at 211.548 kb on - strand at 211.750 kb on - strand, within EX31_RS10020 at 211.787 kb on + strand, within EX31_RS10020 at 211.822 kb on - strand at 212.024 kb on - strand, within EX31_RS10025 at 212.081 kb on - strand, within EX31_RS10025 at 212.131 kb on + strand, within EX31_RS10025 at 212.132 kb on - strand, within EX31_RS10025 at 212.164 kb on - strand, within EX31_RS10025 at 212.209 kb on - strand, within EX31_RS10025 at 212.366 kb on - strand at 212.392 kb on - strand at 212.398 kb on + strand at 212.398 kb on + strand at 212.398 kb on + strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.399 kb on - strand at 212.468 kb on + strand at 212.469 kb on - strand at 212.549 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.578 kb on - strand at 212.589 kb on + strand, within EX31_RS10030 at 212.590 kb on - strand, within EX31_RS10030 at 212.638 kb on - strand, within EX31_RS10030 at 212.642 kb on - strand, within EX31_RS10030 at 212.703 kb on - strand, within EX31_RS10030
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 210,588 + +0.4 211,167 - EX31_RS10015 0.79 +1.3 211,225 - EX31_RS10015 0.87 +0.3 211,319 - +0.2 211,362 - +0.9 211,392 + -0.4 211,393 - +0.6 211,393 - -0.0 211,451 + +0.1 211,452 - -1.2 211,452 - -0.2 211,455 + -1.8 211,455 + -0.3 211,455 + -0.0 211,455 + +1.0 211,455 + +0.0 211,456 - -2.0 211,456 - -1.5 211,456 - +0.7 211,460 + +0.6 211,460 + -0.1 211,460 + -0.9 211,461 - +0.4 211,539 - -0.8 211,543 + +0.5 211,548 - -0.7 211,750 - EX31_RS10020 0.73 -0.2 211,787 + EX31_RS10020 0.86 -0.5 211,822 - -1.2 212,024 - EX31_RS10025 0.11 -0.1 212,081 - EX31_RS10025 0.31 -1.1 212,131 + EX31_RS10025 0.48 +1.1 212,132 - EX31_RS10025 0.48 +0.2 212,164 - EX31_RS10025 0.59 -1.1 212,209 - EX31_RS10025 0.75 -1.0 212,366 - -0.0 212,392 - +0.2 212,398 + +0.2 212,398 + +0.4 212,398 + -0.5 212,399 - +0.3 212,399 - +1.1 212,399 - -0.6 212,399 - -0.5 212,399 - -2.2 212,399 - -0.1 212,399 - -0.2 212,399 - +0.7 212,399 - +0.8 212,468 + -1.9 212,469 - -0.4 212,549 - +1.5 212,578 - -0.9 212,578 - -0.2 212,578 - -0.4 212,578 - +1.1 212,578 - +0.2 212,589 + EX31_RS10030 0.15 -0.8 212,590 - EX31_RS10030 0.16 -1.0 212,638 - EX31_RS10030 0.42 -0.1 212,642 - EX31_RS10030 0.44 -1.0 212,703 - EX31_RS10030 0.78 +0.7
Or see this region's nucleotide sequence