Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09975 and EX31_RS09980 overlap by 1 nucleotides EX31_RS09980 and EX31_RS09985 are separated by 215 nucleotides EX31_RS09985 and EX31_RS09990 are separated by 71 nucleotides
EX31_RS09975: EX31_RS09975 - tryptophan synthase subunit beta, at 204,564 to 205,754
_RS09975
EX31_RS09980: EX31_RS09980 - tryptophan synthase subunit alpha, at 205,754 to 206,560
_RS09980
EX31_RS09985: EX31_RS09985 - BON domain-containing protein, at 206,776 to 207,090
_RS09985
EX31_RS09990: EX31_RS09990 - outer membrane protein OmpW, at 207,162 to 207,794
_RS09990
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 204.780 kb on + strand, within EX31_RS09975 at 204.780 kb on + strand, within EX31_RS09975 at 204.780 kb on + strand, within EX31_RS09975 at 204.781 kb on - strand, within EX31_RS09975 at 204.957 kb on + strand, within EX31_RS09975 at 204.957 kb on + strand, within EX31_RS09975 at 204.957 kb on + strand, within EX31_RS09975 at 204.957 kb on + strand, within EX31_RS09975 at 204.957 kb on + strand, within EX31_RS09975 at 204.957 kb on + strand, within EX31_RS09975 at 204.957 kb on + strand, within EX31_RS09975 at 204.958 kb on - strand, within EX31_RS09975 at 204.958 kb on - strand, within EX31_RS09975 at 204.958 kb on - strand, within EX31_RS09975 at 205.040 kb on + strand, within EX31_RS09975 at 205.040 kb on + strand, within EX31_RS09975 at 205.070 kb on + strand, within EX31_RS09975 at 205.101 kb on + strand, within EX31_RS09975 at 205.116 kb on + strand, within EX31_RS09975 at 205.116 kb on + strand, within EX31_RS09975 at 205.179 kb on - strand, within EX31_RS09975 at 205.179 kb on - strand, within EX31_RS09975 at 205.277 kb on + strand, within EX31_RS09975 at 205.391 kb on + strand, within EX31_RS09975 at 205.395 kb on + strand, within EX31_RS09975 at 205.395 kb on + strand, within EX31_RS09975 at 205.395 kb on + strand, within EX31_RS09975 at 205.396 kb on - strand, within EX31_RS09975 at 205.530 kb on + strand, within EX31_RS09975 at 205.530 kb on + strand, within EX31_RS09975 at 205.531 kb on - strand, within EX31_RS09975 at 205.753 kb on - strand at 205.763 kb on + strand at 205.773 kb on + strand at 205.774 kb on - strand at 206.057 kb on + strand, within EX31_RS09980 at 206.057 kb on + strand, within EX31_RS09980 at 206.057 kb on + strand, within EX31_RS09980 at 206.057 kb on + strand, within EX31_RS09980 at 206.058 kb on - strand, within EX31_RS09980 at 206.058 kb on - strand, within EX31_RS09980 at 206.096 kb on + strand, within EX31_RS09980 at 206.096 kb on + strand, within EX31_RS09980 at 206.097 kb on - strand, within EX31_RS09980 at 206.203 kb on + strand, within EX31_RS09980 at 206.203 kb on + strand, within EX31_RS09980 at 206.203 kb on + strand, within EX31_RS09980 at 206.270 kb on + strand, within EX31_RS09980 at 206.276 kb on + strand, within EX31_RS09980 at 206.276 kb on + strand, within EX31_RS09980 at 206.277 kb on - strand, within EX31_RS09980 at 206.277 kb on - strand, within EX31_RS09980 at 206.277 kb on - strand, within EX31_RS09980 at 206.277 kb on - strand, within EX31_RS09980 at 206.347 kb on + strand, within EX31_RS09980 at 206.353 kb on - strand, within EX31_RS09980 at 206.360 kb on + strand, within EX31_RS09980 at 206.361 kb on - strand, within EX31_RS09980 at 206.446 kb on + strand, within EX31_RS09980 at 206.446 kb on + strand, within EX31_RS09980 at 206.470 kb on + strand, within EX31_RS09980 at 206.470 kb on + strand, within EX31_RS09980 at 206.558 kb on + strand at 206.647 kb on + strand at 206.648 kb on - strand at 206.650 kb on + strand at 206.662 kb on + strand at 206.696 kb on + strand at 206.696 kb on + strand at 206.696 kb on + strand at 206.697 kb on - strand at 206.697 kb on - strand at 206.728 kb on - strand at 206.878 kb on + strand, within EX31_RS09985 at 206.879 kb on - strand, within EX31_RS09985 at 206.909 kb on + strand, within EX31_RS09985 at 206.931 kb on + strand, within EX31_RS09985 at 206.931 kb on + strand, within EX31_RS09985 at 206.931 kb on + strand, within EX31_RS09985 at 206.932 kb on - strand, within EX31_RS09985 at 206.932 kb on - strand, within EX31_RS09985 at 206.932 kb on - strand, within EX31_RS09985 at 206.940 kb on + strand, within EX31_RS09985 at 206.940 kb on + strand, within EX31_RS09985 at 206.941 kb on - strand, within EX31_RS09985 at 206.941 kb on - strand, within EX31_RS09985 at 206.970 kb on + strand, within EX31_RS09985 at 207.075 kb on + strand at 207.100 kb on + strand at 207.101 kb on - strand at 207.101 kb on - strand at 207.189 kb on - strand at 207.189 kb on - strand at 207.189 kb on - strand at 207.189 kb on - strand at 207.189 kb on - strand at 207.314 kb on - strand, within EX31_RS09990 at 207.314 kb on - strand, within EX31_RS09990 at 207.409 kb on + strand, within EX31_RS09990 at 207.410 kb on - strand, within EX31_RS09990 at 207.421 kb on + strand, within EX31_RS09990 at 207.422 kb on - strand, within EX31_RS09990 at 207.422 kb on - strand, within EX31_RS09990 at 207.422 kb on - strand, within EX31_RS09990 at 207.422 kb on - strand, within EX31_RS09990 at 207.429 kb on - strand, within EX31_RS09990 at 207.433 kb on - strand, within EX31_RS09990 at 207.433 kb on - strand, within EX31_RS09990 at 207.475 kb on + strand, within EX31_RS09990 at 207.475 kb on + strand, within EX31_RS09990 at 207.476 kb on - strand, within EX31_RS09990 at 207.476 kb on - strand, within EX31_RS09990 at 207.476 kb on - strand, within EX31_RS09990
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 204,780 + EX31_RS09975 0.18 -1.2 204,780 + EX31_RS09975 0.18 -0.4 204,780 + EX31_RS09975 0.18 -0.6 204,781 - EX31_RS09975 0.18 -1.1 204,957 + EX31_RS09975 0.33 -0.3 204,957 + EX31_RS09975 0.33 -0.3 204,957 + EX31_RS09975 0.33 -0.1 204,957 + EX31_RS09975 0.33 -0.3 204,957 + EX31_RS09975 0.33 -1.2 204,957 + EX31_RS09975 0.33 -1.0 204,957 + EX31_RS09975 0.33 +0.4 204,958 - EX31_RS09975 0.33 +0.6 204,958 - EX31_RS09975 0.33 +0.1 204,958 - EX31_RS09975 0.33 -0.4 205,040 + EX31_RS09975 0.40 +0.0 205,040 + EX31_RS09975 0.40 -1.5 205,070 + EX31_RS09975 0.42 +0.2 205,101 + EX31_RS09975 0.45 -0.4 205,116 + EX31_RS09975 0.46 -0.1 205,116 + EX31_RS09975 0.46 -0.6 205,179 - EX31_RS09975 0.52 -0.2 205,179 - EX31_RS09975 0.52 -2.2 205,277 + EX31_RS09975 0.60 +0.3 205,391 + EX31_RS09975 0.69 +0.8 205,395 + EX31_RS09975 0.70 +0.2 205,395 + EX31_RS09975 0.70 -2.9 205,395 + EX31_RS09975 0.70 -1.3 205,396 - EX31_RS09975 0.70 +0.8 205,530 + EX31_RS09975 0.81 -0.6 205,530 + EX31_RS09975 0.81 -1.6 205,531 - EX31_RS09975 0.81 -0.8 205,753 - +0.3 205,763 + -1.1 205,773 + -1.2 205,774 - +3.0 206,057 + EX31_RS09980 0.38 +0.7 206,057 + EX31_RS09980 0.38 +0.8 206,057 + EX31_RS09980 0.38 -1.6 206,057 + EX31_RS09980 0.38 -0.7 206,058 - EX31_RS09980 0.38 -0.4 206,058 - EX31_RS09980 0.38 -0.6 206,096 + EX31_RS09980 0.42 +1.3 206,096 + EX31_RS09980 0.42 +0.0 206,097 - EX31_RS09980 0.43 -1.5 206,203 + EX31_RS09980 0.56 -0.0 206,203 + EX31_RS09980 0.56 -0.8 206,203 + EX31_RS09980 0.56 -0.7 206,270 + EX31_RS09980 0.64 -0.5 206,276 + EX31_RS09980 0.65 -0.8 206,276 + EX31_RS09980 0.65 -0.3 206,277 - EX31_RS09980 0.65 -0.1 206,277 - EX31_RS09980 0.65 -0.6 206,277 - EX31_RS09980 0.65 +1.4 206,277 - EX31_RS09980 0.65 -0.2 206,347 + EX31_RS09980 0.73 -0.5 206,353 - EX31_RS09980 0.74 -2.3 206,360 + EX31_RS09980 0.75 -1.4 206,361 - EX31_RS09980 0.75 -1.1 206,446 + EX31_RS09980 0.86 -1.2 206,446 + EX31_RS09980 0.86 +0.3 206,470 + EX31_RS09980 0.89 +0.2 206,470 + EX31_RS09980 0.89 -0.3 206,558 + -0.7 206,647 + -2.5 206,648 - +0.2 206,650 + +0.7 206,662 + -0.3 206,696 + -0.4 206,696 + -0.2 206,696 + -1.2 206,697 - +0.2 206,697 - -0.0 206,728 - +0.8 206,878 + EX31_RS09985 0.32 +1.7 206,879 - EX31_RS09985 0.33 +0.2 206,909 + EX31_RS09985 0.42 -0.5 206,931 + EX31_RS09985 0.49 +0.2 206,931 + EX31_RS09985 0.49 -0.1 206,931 + EX31_RS09985 0.49 +1.2 206,932 - EX31_RS09985 0.50 +1.5 206,932 - EX31_RS09985 0.50 +1.6 206,932 - EX31_RS09985 0.50 -1.0 206,940 + EX31_RS09985 0.52 -0.5 206,940 + EX31_RS09985 0.52 +0.5 206,941 - EX31_RS09985 0.52 +0.8 206,941 - EX31_RS09985 0.52 -0.3 206,970 + EX31_RS09985 0.62 +1.3 207,075 + -0.4 207,100 + -0.3 207,101 - +0.5 207,101 - +0.1 207,189 - +0.0 207,189 - +0.3 207,189 - +0.4 207,189 - +0.8 207,189 - -0.2 207,314 - EX31_RS09990 0.24 -0.2 207,314 - EX31_RS09990 0.24 -0.1 207,409 + EX31_RS09990 0.39 +0.4 207,410 - EX31_RS09990 0.39 -0.4 207,421 + EX31_RS09990 0.41 -0.5 207,422 - EX31_RS09990 0.41 -0.9 207,422 - EX31_RS09990 0.41 -0.5 207,422 - EX31_RS09990 0.41 -0.5 207,422 - EX31_RS09990 0.41 +0.0 207,429 - EX31_RS09990 0.42 +0.5 207,433 - EX31_RS09990 0.43 +1.5 207,433 - EX31_RS09990 0.43 -0.2 207,475 + EX31_RS09990 0.49 +0.0 207,475 + EX31_RS09990 0.49 -0.4 207,476 - EX31_RS09990 0.50 +0.5 207,476 - EX31_RS09990 0.50 +1.6 207,476 - EX31_RS09990 0.50 -0.3
Or see this region's nucleotide sequence