Strain Fitness in Rahnella sp. WP5 around EX31_RS09260

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09255 and EX31_RS09260 are separated by 36 nucleotidesEX31_RS09260 and EX31_RS09265 are separated by 30 nucleotidesEX31_RS09265 and EX31_RS09270 overlap by 1 nucleotides EX31_RS09255: EX31_RS09255 - glutathione ABC transporter substrate-binding protein, at 49,214 to 50,758 _RS09255 EX31_RS09260: EX31_RS09260 - ABC transporter ATP-binding protein, at 50,795 to 52,663 _RS09260 EX31_RS09265: EX31_RS09265 - L-Ala-D/L-Glu epimerase, at 52,694 to 53,659 _RS09265 EX31_RS09270: EX31_RS09270 - DUF1611 domain-containing protein, at 53,659 to 54,669 _RS09270 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 49.883 kb on - strand, within EX31_RS09255at 49.888 kb on - strand, within EX31_RS09255at 49.892 kb on - strand, within EX31_RS09255at 49.950 kb on + strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.951 kb on - strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.959 kb on + strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.960 kb on - strand, within EX31_RS09255at 49.981 kb on + strand, within EX31_RS09255at 50.115 kb on - strand, within EX31_RS09255at 50.139 kb on + strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.140 kb on - strand, within EX31_RS09255at 50.148 kb on + strand, within EX31_RS09255at 50.171 kb on - strand, within EX31_RS09255at 50.390 kb on - strand, within EX31_RS09255at 50.522 kb on - strand, within EX31_RS09255at 50.621 kb on - strandat 50.661 kb on + strandat 50.661 kb on + strandat 50.661 kb on + strandat 50.661 kb on + strandat 50.662 kb on - strandat 50.737 kb on + strandat 50.797 kb on - strandat 50.836 kb on - strandat 50.960 kb on - strandat 51.024 kb on + strand, within EX31_RS09260at 51.024 kb on + strand, within EX31_RS09260at 51.080 kb on - strand, within EX31_RS09260at 51.356 kb on + strand, within EX31_RS09260at 51.602 kb on - strand, within EX31_RS09260at 51.602 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260at 51.718 kb on - strand, within EX31_RS09260at 51.811 kb on + strand, within EX31_RS09260at 51.897 kb on + strand, within EX31_RS09260at 51.897 kb on + strand, within EX31_RS09260at 51.898 kb on - strand, within EX31_RS09260at 51.960 kb on + strand, within EX31_RS09260at 51.961 kb on - strand, within EX31_RS09260at 52.031 kb on - strand, within EX31_RS09260at 52.201 kb on + strand, within EX31_RS09260at 52.202 kb on - strand, within EX31_RS09260at 52.226 kb on - strand, within EX31_RS09260at 52.683 kb on - strandat 52.925 kb on - strand, within EX31_RS09265at 52.939 kb on - strand, within EX31_RS09265at 53.318 kb on - strand, within EX31_RS09265at 53.467 kb on + strand, within EX31_RS09265at 53.467 kb on + strand, within EX31_RS09265at 53.468 kb on - strand, within EX31_RS09265at 53.562 kb on + strand, within EX31_RS09265at 53.570 kb on + strandat 53.570 kb on + strandat 53.571 kb on - strandat 53.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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49,883 - EX31_RS09255 0.43 -0.2
49,888 - EX31_RS09255 0.44 -0.0
49,892 - EX31_RS09255 0.44 +0.1
49,950 + EX31_RS09255 0.48 +0.2
49,951 - EX31_RS09255 0.48 +0.6
49,951 - EX31_RS09255 0.48 -0.6
49,951 - EX31_RS09255 0.48 +0.9
49,951 - EX31_RS09255 0.48 +0.2
49,959 + EX31_RS09255 0.48 +1.1
49,959 + EX31_RS09255 0.48 +1.4
49,959 + EX31_RS09255 0.48 +0.1
49,959 + EX31_RS09255 0.48 -0.1
49,959 + EX31_RS09255 0.48 +0.2
49,960 - EX31_RS09255 0.48 +0.7
49,960 - EX31_RS09255 0.48 -0.2
49,960 - EX31_RS09255 0.48 -1.9
49,960 - EX31_RS09255 0.48 +0.5
49,960 - EX31_RS09255 0.48 -0.1
49,981 + EX31_RS09255 0.50 -1.4
50,115 - EX31_RS09255 0.58 +0.1
50,139 + EX31_RS09255 0.60 +0.6
50,140 - EX31_RS09255 0.60 +0.5
50,140 - EX31_RS09255 0.60 -1.2
50,140 - EX31_RS09255 0.60 +0.7
50,140 - EX31_RS09255 0.60 +1.3
50,148 + EX31_RS09255 0.60 -0.3
50,171 - EX31_RS09255 0.62 +0.2
50,390 - EX31_RS09255 0.76 -1.6
50,522 - EX31_RS09255 0.85 +0.7
50,621 - -1.6
50,661 + +0.6
50,661 + -0.7
50,661 + +1.3
50,661 + +0.9
50,662 - -0.7
50,737 + +1.0
50,797 - -0.3
50,836 - -1.0
50,960 - +1.0
51,024 + EX31_RS09260 0.12 -0.9
51,024 + EX31_RS09260 0.12 -1.1
51,080 - EX31_RS09260 0.15 -0.4
51,356 + EX31_RS09260 0.30 -2.1
51,602 - EX31_RS09260 0.43 -0.1
51,602 - EX31_RS09260 0.43 +0.3
51,718 - EX31_RS09260 0.49 -0.2
51,718 - EX31_RS09260 0.49 +0.0
51,718 - EX31_RS09260 0.49 +0.8
51,718 - EX31_RS09260 0.49 -0.7
51,811 + EX31_RS09260 0.54 -0.1
51,897 + EX31_RS09260 0.59 -0.8
51,897 + EX31_RS09260 0.59 -1.7
51,898 - EX31_RS09260 0.59 -1.1
51,960 + EX31_RS09260 0.62 +0.7
51,961 - EX31_RS09260 0.62 -0.1
52,031 - EX31_RS09260 0.66 +0.8
52,201 + EX31_RS09260 0.75 -0.5
52,202 - EX31_RS09260 0.75 -0.7
52,226 - EX31_RS09260 0.77 -1.0
52,683 - +0.5
52,925 - EX31_RS09265 0.24 -0.1
52,939 - EX31_RS09265 0.25 -1.2
53,318 - EX31_RS09265 0.65 +1.0
53,467 + EX31_RS09265 0.80 +0.3
53,467 + EX31_RS09265 0.80 +0.2
53,468 - EX31_RS09265 0.80 +0.2
53,562 + EX31_RS09265 0.90 +0.4
53,570 + -0.0
53,570 + -0.6
53,571 - +0.0
53,571 - -0.3

Or see this region's nucleotide sequence