Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09165 and EX31_RS09170 overlap by 8 nucleotides EX31_RS09170 and EX31_RS09175 overlap by 4 nucleotides
EX31_RS09165: EX31_RS09165 - FadR family transcriptional regulator, at 29,795 to 30,529
_RS09165
EX31_RS09170: EX31_RS09170 - ABC transporter ATP-binding protein, at 30,522 to 31,544
_RS09170
EX31_RS09175: EX31_RS09175 - ATP-binding cassette domain-containing protein, at 31,541 to 32,656
_RS09175
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.608 kb on + strand at 29.609 kb on - strand at 29.609 kb on - strand at 29.611 kb on - strand at 29.772 kb on - strand at 29.794 kb on + strand at 29.794 kb on + strand at 29.794 kb on + strand at 29.794 kb on + strand at 29.795 kb on - strand at 29.795 kb on - strand at 29.827 kb on + strand at 29.859 kb on + strand at 29.859 kb on + strand at 29.860 kb on - strand at 29.871 kb on + strand, within EX31_RS09165 at 29.872 kb on - strand, within EX31_RS09165 at 29.872 kb on - strand, within EX31_RS09165 at 30.131 kb on + strand, within EX31_RS09165 at 30.257 kb on - strand, within EX31_RS09165 at 30.400 kb on + strand, within EX31_RS09165 at 30.405 kb on + strand, within EX31_RS09165 at 30.405 kb on + strand, within EX31_RS09165 at 30.786 kb on + strand, within EX31_RS09170 at 31.061 kb on - strand, within EX31_RS09170 at 31.222 kb on - strand, within EX31_RS09170 at 31.285 kb on - strand, within EX31_RS09170 at 31.509 kb on + strand at 31.510 kb on - strand at 31.594 kb on + strand at 31.594 kb on + strand at 31.641 kb on + strand at 31.642 kb on - strand at 31.731 kb on + strand, within EX31_RS09175 at 31.769 kb on + strand, within EX31_RS09175 at 31.770 kb on - strand, within EX31_RS09175 at 32.212 kb on + strand, within EX31_RS09175 at 32.237 kb on + strand, within EX31_RS09175 at 32.238 kb on - strand, within EX31_RS09175 at 32.238 kb on - strand, within EX31_RS09175 at 32.368 kb on - strand, within EX31_RS09175 at 32.368 kb on - strand, within EX31_RS09175
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 29,608 + -0.1 29,609 - +0.5 29,609 - -1.9 29,611 - +2.3 29,772 - -0.2 29,794 + -1.5 29,794 + +0.3 29,794 + +0.4 29,794 + -0.1 29,795 - -0.5 29,795 - -0.5 29,827 + +1.0 29,859 + +0.3 29,859 + -0.0 29,860 - +0.6 29,871 + EX31_RS09165 0.10 -0.5 29,872 - EX31_RS09165 0.10 +1.4 29,872 - EX31_RS09165 0.10 -0.1 30,131 + EX31_RS09165 0.46 +0.1 30,257 - EX31_RS09165 0.63 +0.7 30,400 + EX31_RS09165 0.82 +0.8 30,405 + EX31_RS09165 0.83 +0.0 30,405 + EX31_RS09165 0.83 +0.2 30,786 + EX31_RS09170 0.26 -1.0 31,061 - EX31_RS09170 0.53 -0.4 31,222 - EX31_RS09170 0.68 +0.5 31,285 - EX31_RS09170 0.75 -1.5 31,509 + -0.0 31,510 - -0.3 31,594 + -0.4 31,594 + -0.1 31,641 + +0.1 31,642 - +0.1 31,731 + EX31_RS09175 0.17 +0.3 31,769 + EX31_RS09175 0.20 +0.5 31,770 - EX31_RS09175 0.21 -0.4 32,212 + EX31_RS09175 0.60 +1.0 32,237 + EX31_RS09175 0.62 +0.5 32,238 - EX31_RS09175 0.62 -0.2 32,238 - EX31_RS09175 0.62 -0.1 32,368 - EX31_RS09175 0.74 -0.1 32,368 - EX31_RS09175 0.74 +0.3
Or see this region's nucleotide sequence