Strain Fitness in Rahnella sp. WP5 around EX31_RS09065

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09060 and EX31_RS09065 are separated by 38 nucleotidesEX31_RS09065 and EX31_RS24950 are separated by 76 nucleotidesEX31_RS24950 and EX31_RS09075 are separated by 77 nucleotides EX31_RS09060: EX31_RS09060 - fimbrial biogenesis outer membrane usher protein, at 795 to 3,449 _RS09060 EX31_RS09065: EX31_RS09065 - molecular chaperone, at 3,488 to 4,162 _RS09065 EX31_RS24950: EX31_RS24950 - type 1 fimbrial protein, at 4,239 to 4,778 _RS24950 EX31_RS09075: EX31_RS09075 - type 1 fimbrial protein, at 4,856 to 5,383 _RS09075 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.641 kb on + strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.642 kb on - strand, within EX31_RS09060at 2.827 kb on + strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.834 kb on - strand, within EX31_RS09060at 2.856 kb on - strand, within EX31_RS09060at 2.946 kb on + strand, within EX31_RS09060at 2.977 kb on + strand, within EX31_RS09060at 2.978 kb on - strand, within EX31_RS09060at 2.978 kb on - strand, within EX31_RS09060at 3.047 kb on + strand, within EX31_RS09060at 3.089 kb on - strand, within EX31_RS09060at 3.160 kb on + strand, within EX31_RS09060at 3.222 kb on - strandat 3.222 kb on - strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.310 kb on - strandat 3.315 kb on + strandat 3.535 kb on + strandat 3.572 kb on - strand, within EX31_RS09065at 3.720 kb on + strand, within EX31_RS09065at 3.791 kb on - strand, within EX31_RS09065at 3.791 kb on - strand, within EX31_RS09065at 3.852 kb on + strand, within EX31_RS09065at 3.898 kb on + strand, within EX31_RS09065at 3.898 kb on + strand, within EX31_RS09065at 3.899 kb on - strand, within EX31_RS09065at 4.001 kb on - strand, within EX31_RS09065at 4.005 kb on + strand, within EX31_RS09065at 4.066 kb on - strand, within EX31_RS09065at 4.069 kb on + strand, within EX31_RS09065at 4.069 kb on + strand, within EX31_RS09065at 4.333 kb on + strand, within EX31_RS24950at 4.857 kb on + strandat 4.858 kb on - strandat 4.863 kb on + strandat 4.864 kb on - strandat 5.024 kb on - strand, within EX31_RS09075at 5.024 kb on - strand, within EX31_RS09075at 5.026 kb on + strand, within EX31_RS09075at 5.027 kb on - strand, within EX31_RS09075at 5.027 kb on - strand, within EX31_RS09075at 5.029 kb on - strand, within EX31_RS09075at 5.069 kb on - strand, within EX31_RS09075

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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2,641 + EX31_RS09060 0.70 -0.7
2,641 + EX31_RS09060 0.70 +0.7
2,641 + EX31_RS09060 0.70 -0.4
2,641 + EX31_RS09060 0.70 -0.4
2,641 + EX31_RS09060 0.70 +0.3
2,641 + EX31_RS09060 0.70 +0.0
2,642 - EX31_RS09060 0.70 +0.8
2,642 - EX31_RS09060 0.70 -0.3
2,642 - EX31_RS09060 0.70 -2.0
2,642 - EX31_RS09060 0.70 +0.9
2,642 - EX31_RS09060 0.70 -0.7
2,642 - EX31_RS09060 0.70 -0.4
2,642 - EX31_RS09060 0.70 +0.1
2,827 + EX31_RS09060 0.77 -1.4
2,834 - EX31_RS09060 0.77 -0.3
2,834 - EX31_RS09060 0.77 +0.6
2,834 - EX31_RS09060 0.77 -0.0
2,834 - EX31_RS09060 0.77 -1.3
2,856 - EX31_RS09060 0.78 +0.3
2,946 + EX31_RS09060 0.81 +0.6
2,977 + EX31_RS09060 0.82 -1.2
2,978 - EX31_RS09060 0.82 +0.2
2,978 - EX31_RS09060 0.82 -2.4
3,047 + EX31_RS09060 0.85 -0.6
3,089 - EX31_RS09060 0.86 -0.9
3,160 + EX31_RS09060 0.89 -0.4
3,222 - -1.4
3,222 - +0.9
3,258 - -0.7
3,258 - +0.2
3,258 - +1.3
3,310 - -1.7
3,315 + +0.3
3,535 + +0.5
3,572 - EX31_RS09065 0.12 -2.9
3,720 + EX31_RS09065 0.34 -0.7
3,791 - EX31_RS09065 0.45 -0.7
3,791 - EX31_RS09065 0.45 +0.6
3,852 + EX31_RS09065 0.54 -1.2
3,898 + EX31_RS09065 0.61 -2.5
3,898 + EX31_RS09065 0.61 +0.4
3,899 - EX31_RS09065 0.61 +1.2
4,001 - EX31_RS09065 0.76 -0.9
4,005 + EX31_RS09065 0.77 -1.4
4,066 - EX31_RS09065 0.86 +0.5
4,069 + EX31_RS09065 0.86 +0.8
4,069 + EX31_RS09065 0.86 +0.3
4,333 + EX31_RS24950 0.17 +2.1
4,857 + -0.7
4,858 - +1.2
4,863 + +1.4
4,864 - -0.4
5,024 - EX31_RS09075 0.32 +0.7
5,024 - EX31_RS09075 0.32 +0.3
5,026 + EX31_RS09075 0.32 +0.3
5,027 - EX31_RS09075 0.32 -0.6
5,027 - EX31_RS09075 0.32 +0.8
5,029 - EX31_RS09075 0.33 +0.1
5,069 - EX31_RS09075 0.40 +1.1

Or see this region's nucleotide sequence