Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08510 and EX31_RS25985 overlap by 11 nucleotides EX31_RS25985 and EX31_RS08515 are separated by 114 nucleotides EX31_RS08515 and EX31_RS08520 are separated by 129 nucleotides
EX31_RS08510: EX31_RS08510 - DEAD/DEAH family ATP-dependent RNA helicase, at 207,038 to 208,960
_RS08510
EX31_RS25985: EX31_RS25985 - protein YrbN, at 208,950 to 209,030
_RS25985
EX31_RS08515: EX31_RS08515 - lipoprotein NlpI, at 209,145 to 210,029
_RS08515
EX31_RS08520: EX31_RS08520 - polyribonucleotide nucleotidyltransferase, at 210,159 to 212,282
_RS08520
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.977 kb on - strand, within EX31_RS25985 at 208.980 kb on - strand, within EX31_RS25985 at 208.980 kb on - strand, within EX31_RS25985 at 208.980 kb on - strand, within EX31_RS25985 at 208.980 kb on - strand, within EX31_RS25985 at 208.980 kb on - strand, within EX31_RS25985 at 209.056 kb on - strand at 209.056 kb on - strand at 209.056 kb on - strand at 209.061 kb on - strand at 209.061 kb on - strand at 209.063 kb on - strand at 209.063 kb on - strand at 209.100 kb on - strand at 209.100 kb on - strand at 209.113 kb on - strand at 209.113 kb on - strand at 209.113 kb on - strand at 209.113 kb on - strand at 209.113 kb on - strand at 209.113 kb on - strand at 209.122 kb on - strand at 209.122 kb on - strand at 209.122 kb on - strand at 209.122 kb on - strand at 209.147 kb on - strand at 209.147 kb on - strand at 209.147 kb on - strand at 209.147 kb on - strand at 209.147 kb on - strand at 209.167 kb on - strand at 209.167 kb on - strand at 209.232 kb on - strand at 209.232 kb on - strand at 209.244 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.296 kb on - strand, within EX31_RS08515 at 209.300 kb on - strand, within EX31_RS08515 at 209.300 kb on - strand, within EX31_RS08515 at 209.300 kb on - strand, within EX31_RS08515 at 209.300 kb on - strand, within EX31_RS08515 at 209.311 kb on - strand, within EX31_RS08515 at 209.311 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.315 kb on - strand, within EX31_RS08515 at 209.391 kb on - strand, within EX31_RS08515 at 209.391 kb on - strand, within EX31_RS08515 at 209.391 kb on - strand, within EX31_RS08515 at 209.414 kb on - strand, within EX31_RS08515 at 209.427 kb on - strand, within EX31_RS08515 at 209.462 kb on - strand, within EX31_RS08515 at 209.519 kb on - strand, within EX31_RS08515 at 209.519 kb on - strand, within EX31_RS08515 at 209.561 kb on - strand, within EX31_RS08515 at 209.606 kb on - strand, within EX31_RS08515 at 209.606 kb on - strand, within EX31_RS08515 at 209.606 kb on - strand, within EX31_RS08515 at 209.609 kb on - strand, within EX31_RS08515 at 209.609 kb on - strand, within EX31_RS08515 at 209.639 kb on - strand, within EX31_RS08515 at 209.639 kb on - strand, within EX31_RS08515 at 209.644 kb on + strand, within EX31_RS08515 at 209.645 kb on - strand, within EX31_RS08515 at 209.645 kb on - strand, within EX31_RS08515 at 209.645 kb on - strand, within EX31_RS08515 at 209.662 kb on - strand, within EX31_RS08515 at 209.662 kb on - strand, within EX31_RS08515 at 209.662 kb on - strand, within EX31_RS08515 at 209.665 kb on - strand, within EX31_RS08515 at 209.684 kb on - strand, within EX31_RS08515 at 209.684 kb on - strand, within EX31_RS08515 at 209.684 kb on - strand, within EX31_RS08515 at 209.684 kb on - strand, within EX31_RS08515 at 209.684 kb on - strand, within EX31_RS08515 at 209.717 kb on - strand, within EX31_RS08515 at 209.729 kb on - strand, within EX31_RS08515 at 209.729 kb on - strand, within EX31_RS08515 at 209.729 kb on - strand, within EX31_RS08515 at 209.729 kb on - strand, within EX31_RS08515 at 209.729 kb on - strand, within EX31_RS08515 at 209.729 kb on - strand, within EX31_RS08515 at 209.760 kb on - strand, within EX31_RS08515 at 209.811 kb on - strand, within EX31_RS08515 at 209.811 kb on - strand, within EX31_RS08515 at 209.811 kb on - strand, within EX31_RS08515 at 209.815 kb on + strand, within EX31_RS08515 at 209.815 kb on + strand, within EX31_RS08515 at 209.815 kb on + strand, within EX31_RS08515 at 209.816 kb on - strand, within EX31_RS08515 at 209.816 kb on - strand, within EX31_RS08515 at 209.816 kb on - strand, within EX31_RS08515 at 209.816 kb on - strand, within EX31_RS08515 at 209.816 kb on - strand, within EX31_RS08515 at 209.833 kb on + strand, within EX31_RS08515 at 209.834 kb on - strand, within EX31_RS08515 at 209.834 kb on - strand, within EX31_RS08515 at 209.834 kb on - strand, within EX31_RS08515 at 209.834 kb on - strand, within EX31_RS08515 at 209.835 kb on + strand, within EX31_RS08515 at 209.835 kb on + strand, within EX31_RS08515 at 209.835 kb on + strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.836 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.839 kb on - strand, within EX31_RS08515 at 209.880 kb on + strand, within EX31_RS08515 at 209.881 kb on - strand, within EX31_RS08515 at 209.881 kb on - strand, within EX31_RS08515 at 209.881 kb on - strand, within EX31_RS08515 at 209.881 kb on - strand, within EX31_RS08515 at 209.881 kb on - strand, within EX31_RS08515 at 209.881 kb on - strand, within EX31_RS08515 at 209.954 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.987 kb on + strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 209.988 kb on - strand at 210.004 kb on + strand at 210.004 kb on + strand at 210.004 kb on + strand at 210.004 kb on + strand at 210.005 kb on - strand at 210.005 kb on - strand at 210.005 kb on - strand at 210.005 kb on - strand at 210.005 kb on - strand at 210.005 kb on - strand at 210.005 kb on - strand at 210.141 kb on + strand at 210.207 kb on - strand at 210.289 kb on + strand at 210.290 kb on - strand at 210.290 kb on - strand at 210.307 kb on - strand at 210.333 kb on - strand at 210.333 kb on - strand at 210.333 kb on - strand at 210.333 kb on - strand at 210.333 kb on - strand at 210.333 kb on - strand at 210.385 kb on - strand, within EX31_RS08520 at 210.385 kb on - strand, within EX31_RS08520 at 210.402 kb on - strand, within EX31_RS08520 at 210.409 kb on + strand, within EX31_RS08520 at 210.409 kb on + strand, within EX31_RS08520 at 210.409 kb on + strand, within EX31_RS08520 at 210.409 kb on + strand, within EX31_RS08520 at 210.409 kb on + strand, within EX31_RS08520 at 210.410 kb on - strand, within EX31_RS08520 at 210.410 kb on - strand, within EX31_RS08520 at 210.410 kb on - strand, within EX31_RS08520 at 210.414 kb on - strand, within EX31_RS08520 at 210.459 kb on - strand, within EX31_RS08520 at 210.464 kb on - strand, within EX31_RS08520 at 210.464 kb on - strand, within EX31_RS08520 at 210.464 kb on - strand, within EX31_RS08520 at 210.464 kb on - strand, within EX31_RS08520 at 210.464 kb on - strand, within EX31_RS08520 at 210.464 kb on - strand, within EX31_RS08520 at 210.464 kb on - strand, within EX31_RS08520 at 210.504 kb on - strand, within EX31_RS08520 at 210.641 kb on + strand, within EX31_RS08520 at 210.641 kb on + strand, within EX31_RS08520 at 210.642 kb on - strand, within EX31_RS08520 at 210.663 kb on - strand, within EX31_RS08520 at 210.663 kb on - strand, within EX31_RS08520 at 210.744 kb on - strand, within EX31_RS08520 at 210.756 kb on - strand, within EX31_RS08520 at 210.804 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.009 kb on - strand, within EX31_RS08520 at 211.016 kb on - strand, within EX31_RS08520
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 208,977 - EX31_RS25985 0.33 -0.6 208,980 - EX31_RS25985 0.37 +0.2 208,980 - EX31_RS25985 0.37 +0.1 208,980 - EX31_RS25985 0.37 -0.7 208,980 - EX31_RS25985 0.37 +0.5 208,980 - EX31_RS25985 0.37 +0.4 209,056 - +0.7 209,056 - -0.4 209,056 - +0.3 209,061 - +0.8 209,061 - -0.4 209,063 - -0.4 209,063 - -0.2 209,100 - -0.1 209,100 - -0.1 209,113 - +0.3 209,113 - +0.7 209,113 - -0.4 209,113 - +0.6 209,113 - +0.3 209,113 - -1.1 209,122 - +0.1 209,122 - -1.5 209,122 - -0.1 209,122 - +0.1 209,147 - -0.6 209,147 - -1.9 209,147 - +0.2 209,147 - +0.4 209,147 - -0.6 209,167 - +0.1 209,167 - -0.2 209,232 - -0.8 209,232 - -0.3 209,244 - EX31_RS08515 0.11 -0.9 209,296 - EX31_RS08515 0.17 +0.4 209,296 - EX31_RS08515 0.17 -0.6 209,296 - EX31_RS08515 0.17 -0.1 209,296 - EX31_RS08515 0.17 -0.4 209,296 - EX31_RS08515 0.17 +0.6 209,296 - EX31_RS08515 0.17 -0.4 209,296 - EX31_RS08515 0.17 -0.3 209,296 - EX31_RS08515 0.17 -0.2 209,296 - EX31_RS08515 0.17 -0.8 209,300 - EX31_RS08515 0.18 -0.9 209,300 - EX31_RS08515 0.18 +0.7 209,300 - EX31_RS08515 0.18 -0.1 209,300 - EX31_RS08515 0.18 +0.1 209,311 - EX31_RS08515 0.19 -1.3 209,311 - EX31_RS08515 0.19 -0.4 209,315 - EX31_RS08515 0.19 -0.3 209,315 - EX31_RS08515 0.19 -0.1 209,315 - EX31_RS08515 0.19 -0.5 209,315 - EX31_RS08515 0.19 -0.7 209,315 - EX31_RS08515 0.19 -1.5 209,315 - EX31_RS08515 0.19 -0.3 209,315 - EX31_RS08515 0.19 -0.9 209,315 - EX31_RS08515 0.19 -1.0 209,315 - EX31_RS08515 0.19 -0.9 209,315 - EX31_RS08515 0.19 -0.1 209,391 - EX31_RS08515 0.28 -2.1 209,391 - EX31_RS08515 0.28 -0.5 209,391 - EX31_RS08515 0.28 -1.1 209,414 - EX31_RS08515 0.30 -0.6 209,427 - EX31_RS08515 0.32 -0.5 209,462 - EX31_RS08515 0.36 +1.6 209,519 - EX31_RS08515 0.42 -0.0 209,519 - EX31_RS08515 0.42 -0.5 209,561 - EX31_RS08515 0.47 -0.4 209,606 - EX31_RS08515 0.52 -0.2 209,606 - EX31_RS08515 0.52 -1.2 209,606 - EX31_RS08515 0.52 +0.9 209,609 - EX31_RS08515 0.52 -1.1 209,609 - EX31_RS08515 0.52 -0.5 209,639 - EX31_RS08515 0.56 -0.6 209,639 - EX31_RS08515 0.56 -0.7 209,644 + EX31_RS08515 0.56 +1.1 209,645 - EX31_RS08515 0.56 -1.4 209,645 - EX31_RS08515 0.56 -2.0 209,645 - EX31_RS08515 0.56 -0.5 209,662 - EX31_RS08515 0.58 -0.9 209,662 - EX31_RS08515 0.58 -0.8 209,662 - EX31_RS08515 0.58 -0.4 209,665 - EX31_RS08515 0.59 +0.1 209,684 - EX31_RS08515 0.61 +0.0 209,684 - EX31_RS08515 0.61 -1.0 209,684 - EX31_RS08515 0.61 -2.0 209,684 - EX31_RS08515 0.61 -0.1 209,684 - EX31_RS08515 0.61 -1.2 209,717 - EX31_RS08515 0.65 -1.1 209,729 - EX31_RS08515 0.66 -0.7 209,729 - EX31_RS08515 0.66 -0.8 209,729 - EX31_RS08515 0.66 +0.2 209,729 - EX31_RS08515 0.66 -0.2 209,729 - EX31_RS08515 0.66 -0.6 209,729 - EX31_RS08515 0.66 -0.9 209,760 - EX31_RS08515 0.69 -0.1 209,811 - EX31_RS08515 0.75 -0.7 209,811 - EX31_RS08515 0.75 -0.9 209,811 - EX31_RS08515 0.75 +0.4 209,815 + EX31_RS08515 0.76 +0.7 209,815 + EX31_RS08515 0.76 -0.1 209,815 + EX31_RS08515 0.76 +2.3 209,816 - EX31_RS08515 0.76 -1.5 209,816 - EX31_RS08515 0.76 -1.1 209,816 - EX31_RS08515 0.76 -1.1 209,816 - EX31_RS08515 0.76 -0.1 209,816 - EX31_RS08515 0.76 -0.7 209,833 + EX31_RS08515 0.78 +1.2 209,834 - EX31_RS08515 0.78 -0.5 209,834 - EX31_RS08515 0.78 -1.0 209,834 - EX31_RS08515 0.78 -0.3 209,834 - EX31_RS08515 0.78 -0.4 209,835 + EX31_RS08515 0.78 +0.6 209,835 + EX31_RS08515 0.78 +0.1 209,835 + EX31_RS08515 0.78 -0.3 209,836 - EX31_RS08515 0.78 +0.2 209,836 - EX31_RS08515 0.78 -0.6 209,836 - EX31_RS08515 0.78 +0.2 209,836 - EX31_RS08515 0.78 -0.4 209,836 - EX31_RS08515 0.78 -0.2 209,836 - EX31_RS08515 0.78 -0.4 209,836 - EX31_RS08515 0.78 -1.0 209,836 - EX31_RS08515 0.78 +0.4 209,839 - EX31_RS08515 0.78 -0.6 209,839 - EX31_RS08515 0.78 -2.2 209,839 - EX31_RS08515 0.78 -1.3 209,839 - EX31_RS08515 0.78 +0.2 209,839 - EX31_RS08515 0.78 -1.1 209,839 - EX31_RS08515 0.78 -1.2 209,839 - EX31_RS08515 0.78 +0.1 209,839 - EX31_RS08515 0.78 -1.8 209,839 - EX31_RS08515 0.78 -0.2 209,839 - EX31_RS08515 0.78 -1.6 209,839 - EX31_RS08515 0.78 -1.0 209,839 - EX31_RS08515 0.78 +0.0 209,839 - EX31_RS08515 0.78 +0.2 209,880 + EX31_RS08515 0.83 -0.3 209,881 - EX31_RS08515 0.83 +0.1 209,881 - EX31_RS08515 0.83 -0.2 209,881 - EX31_RS08515 0.83 +0.1 209,881 - EX31_RS08515 0.83 -1.1 209,881 - EX31_RS08515 0.83 -1.4 209,881 - EX31_RS08515 0.83 -1.0 209,954 + -0.6 209,987 + -1.3 209,987 + -0.0 209,987 + +0.3 209,987 + -0.5 209,987 + -0.1 209,987 + -0.4 209,987 + -0.0 209,987 + -1.1 209,987 + +0.2 209,988 - -0.6 209,988 - -0.9 209,988 - -1.3 209,988 - -0.3 209,988 - +0.0 209,988 - -0.3 209,988 - -1.0 209,988 - +0.6 209,988 - -0.4 209,988 - -0.8 209,988 - -0.0 209,988 - +0.6 209,988 - -1.8 210,004 + +0.9 210,004 + -1.2 210,004 + -0.9 210,004 + -0.3 210,005 - -1.5 210,005 - -0.3 210,005 - -0.5 210,005 - +0.8 210,005 - -0.5 210,005 - +0.3 210,005 - +0.5 210,141 + +0.6 210,207 - +0.2 210,289 + -0.7 210,290 - +0.2 210,290 - -0.0 210,307 - -0.8 210,333 - +0.1 210,333 - +1.4 210,333 - +0.2 210,333 - -0.7 210,333 - -2.1 210,333 - +0.6 210,385 - EX31_RS08520 0.11 +0.9 210,385 - EX31_RS08520 0.11 -0.5 210,402 - EX31_RS08520 0.11 +0.9 210,409 + EX31_RS08520 0.12 -2.3 210,409 + EX31_RS08520 0.12 +0.2 210,409 + EX31_RS08520 0.12 +1.5 210,409 + EX31_RS08520 0.12 -0.4 210,409 + EX31_RS08520 0.12 -0.3 210,410 - EX31_RS08520 0.12 +0.1 210,410 - EX31_RS08520 0.12 +0.8 210,410 - EX31_RS08520 0.12 +0.3 210,414 - EX31_RS08520 0.12 +0.9 210,459 - EX31_RS08520 0.14 +1.0 210,464 - EX31_RS08520 0.14 -0.7 210,464 - EX31_RS08520 0.14 +0.2 210,464 - EX31_RS08520 0.14 +0.0 210,464 - EX31_RS08520 0.14 +0.9 210,464 - EX31_RS08520 0.14 +0.8 210,464 - EX31_RS08520 0.14 +0.8 210,464 - EX31_RS08520 0.14 -0.0 210,504 - EX31_RS08520 0.16 -0.2 210,641 + EX31_RS08520 0.23 +0.6 210,641 + EX31_RS08520 0.23 -1.3 210,642 - EX31_RS08520 0.23 +0.0 210,663 - EX31_RS08520 0.24 -0.1 210,663 - EX31_RS08520 0.24 +0.5 210,744 - EX31_RS08520 0.28 +0.2 210,756 - EX31_RS08520 0.28 -0.9 210,804 - EX31_RS08520 0.30 -0.7 211,009 - EX31_RS08520 0.40 +1.2 211,009 - EX31_RS08520 0.40 +0.5 211,009 - EX31_RS08520 0.40 +0.4 211,009 - EX31_RS08520 0.40 +0.3 211,009 - EX31_RS08520 0.40 -0.8 211,009 - EX31_RS08520 0.40 +0.2 211,009 - EX31_RS08520 0.40 +0.5 211,009 - EX31_RS08520 0.40 -0.0 211,016 - EX31_RS08520 0.40 +0.1
Or see this region's nucleotide sequence