Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07790 and EX31_RS07795 are separated by 138 nucleotides EX31_RS07795 and EX31_RS07800 are separated by 120 nucleotides EX31_RS07800 and EX31_RS07805 are separated by 107 nucleotides EX31_RS07805 and EX31_RS07810 are separated by 161 nucleotides
EX31_RS07790: EX31_RS07790 - alanine--tRNA ligase, at 36,145 to 38,772
_RS07790
EX31_RS07795: EX31_RS07795 - recombination regulator RecX, at 38,911 to 39,600
_RS07795
EX31_RS07800: EX31_RS07800 - recombinase RecA, at 39,721 to 40,785
_RS07800
EX31_RS07805: EX31_RS07805 - nicotinamide-nucleotide amidase, at 40,893 to 41,387
_RS07805
EX31_RS07810: EX31_RS07810 - lytic murein transglycosylase B, at 41,549 to 42,652
_RS07810
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 38.900 kb on - strand at 38.900 kb on - strand at 38.904 kb on + strand at 38.904 kb on + strand at 38.934 kb on + strand at 38.935 kb on - strand at 38.935 kb on - strand at 38.935 kb on - strand at 38.935 kb on - strand at 38.935 kb on - strand at 38.935 kb on - strand at 38.935 kb on - strand at 38.935 kb on - strand at 38.941 kb on + strand at 38.941 kb on + strand at 38.941 kb on + strand at 38.941 kb on + strand at 38.942 kb on - strand at 38.942 kb on - strand at 38.942 kb on - strand at 38.942 kb on - strand at 38.942 kb on - strand at 38.942 kb on - strand at 38.942 kb on - strand at 38.976 kb on - strand at 39.067 kb on + strand, within EX31_RS07795 at 39.067 kb on + strand, within EX31_RS07795 at 39.067 kb on + strand, within EX31_RS07795 at 39.068 kb on - strand, within EX31_RS07795 at 39.094 kb on - strand, within EX31_RS07795 at 39.094 kb on - strand, within EX31_RS07795 at 39.125 kb on - strand, within EX31_RS07795 at 39.125 kb on - strand, within EX31_RS07795 at 39.163 kb on - strand, within EX31_RS07795 at 39.177 kb on + strand, within EX31_RS07795 at 39.177 kb on + strand, within EX31_RS07795 at 39.177 kb on + strand, within EX31_RS07795 at 39.178 kb on - strand, within EX31_RS07795 at 39.178 kb on - strand, within EX31_RS07795 at 39.179 kb on + strand, within EX31_RS07795 at 39.180 kb on - strand, within EX31_RS07795 at 39.180 kb on - strand, within EX31_RS07795 at 39.291 kb on + strand, within EX31_RS07795 at 39.291 kb on + strand, within EX31_RS07795 at 39.292 kb on - strand, within EX31_RS07795 at 39.292 kb on - strand, within EX31_RS07795 at 39.292 kb on - strand, within EX31_RS07795 at 39.396 kb on + strand, within EX31_RS07795 at 39.397 kb on - strand, within EX31_RS07795 at 39.580 kb on - strand at 39.584 kb on - strand at 39.584 kb on - strand at 39.600 kb on + strand at 39.601 kb on - strand at 39.601 kb on - strand at 39.601 kb on - strand at 39.654 kb on - strand at 39.722 kb on + strand at 39.723 kb on - strand at 39.769 kb on - strand at 39.807 kb on + strand at 39.808 kb on - strand at 39.808 kb on - strand at 39.860 kb on + strand, within EX31_RS07800 at 39.861 kb on - strand, within EX31_RS07800 at 39.864 kb on + strand, within EX31_RS07800 at 39.864 kb on + strand, within EX31_RS07800 at 39.905 kb on + strand, within EX31_RS07800 at 39.905 kb on + strand, within EX31_RS07800 at 39.906 kb on - strand, within EX31_RS07800 at 39.906 kb on - strand, within EX31_RS07800 at 39.982 kb on - strand, within EX31_RS07800 at 39.982 kb on - strand, within EX31_RS07800 at 39.982 kb on - strand, within EX31_RS07800 at 40.017 kb on + strand, within EX31_RS07800 at 40.018 kb on - strand, within EX31_RS07800 at 40.018 kb on - strand, within EX31_RS07800 at 40.102 kb on - strand, within EX31_RS07800 at 40.121 kb on - strand, within EX31_RS07800 at 40.121 kb on - strand, within EX31_RS07800 at 40.130 kb on + strand, within EX31_RS07800 at 40.131 kb on - strand, within EX31_RS07800 at 40.131 kb on - strand, within EX31_RS07800 at 40.255 kb on - strand, within EX31_RS07800 at 40.255 kb on - strand, within EX31_RS07800 at 40.255 kb on - strand, within EX31_RS07800 at 40.255 kb on - strand, within EX31_RS07800 at 40.275 kb on + strand, within EX31_RS07800 at 40.275 kb on + strand, within EX31_RS07800 at 40.276 kb on - strand, within EX31_RS07800 at 40.276 kb on - strand, within EX31_RS07800 at 40.276 kb on - strand, within EX31_RS07800 at 40.276 kb on - strand, within EX31_RS07800 at 40.363 kb on - strand, within EX31_RS07800 at 40.475 kb on + strand, within EX31_RS07800 at 40.475 kb on + strand, within EX31_RS07800 at 40.476 kb on - strand, within EX31_RS07800 at 40.476 kb on - strand, within EX31_RS07800 at 40.476 kb on - strand, within EX31_RS07800 at 40.480 kb on - strand, within EX31_RS07800 at 40.480 kb on - strand, within EX31_RS07800 at 40.480 kb on - strand, within EX31_RS07800 at 40.789 kb on + strand at 40.790 kb on - strand at 40.835 kb on - strand at 40.835 kb on - strand at 40.836 kb on + strand at 40.837 kb on - strand at 40.837 kb on - strand at 40.841 kb on + strand at 40.841 kb on + strand at 40.842 kb on - strand at 40.842 kb on - strand at 40.842 kb on - strand at 40.842 kb on - strand at 40.842 kb on - strand at 40.842 kb on - strand at 40.845 kb on + strand at 40.846 kb on - strand at 40.846 kb on - strand at 40.846 kb on - strand at 40.846 kb on - strand at 40.846 kb on - strand at 40.851 kb on + strand at 40.852 kb on - strand at 40.852 kb on - strand at 40.852 kb on - strand at 40.865 kb on + strand at 40.867 kb on + strand at 41.115 kb on + strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.116 kb on - strand, within EX31_RS07805 at 41.165 kb on - strand, within EX31_RS07805 at 41.165 kb on - strand, within EX31_RS07805 at 41.165 kb on - strand, within EX31_RS07805 at 41.221 kb on + strand, within EX31_RS07805 at 41.221 kb on + strand, within EX31_RS07805 at 41.221 kb on + strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.222 kb on - strand, within EX31_RS07805 at 41.264 kb on + strand, within EX31_RS07805 at 41.370 kb on + strand at 41.370 kb on + strand at 41.371 kb on - strand at 41.387 kb on + strand at 41.387 kb on + strand at 41.387 kb on + strand at 41.387 kb on + strand at 41.387 kb on + strand at 41.387 kb on + strand at 41.387 kb on + strand at 41.388 kb on - strand at 41.388 kb on - strand at 41.388 kb on - strand at 41.388 kb on - strand at 41.388 kb on - strand at 41.426 kb on + strand at 41.427 kb on - strand at 41.427 kb on - strand at 41.427 kb on - strand at 41.427 kb on - strand at 41.476 kb on + strand at 41.476 kb on + strand at 41.476 kb on + strand at 41.492 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.599 kb on - strand at 41.616 kb on + strand at 41.616 kb on + strand at 41.617 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.661 kb on + strand, within EX31_RS07810 at 41.662 kb on - strand, within EX31_RS07810 at 41.662 kb on - strand, within EX31_RS07810 at 41.662 kb on - strand, within EX31_RS07810 at 41.662 kb on - strand, within EX31_RS07810 at 41.662 kb on - strand, within EX31_RS07810 at 41.662 kb on - strand, within EX31_RS07810 at 41.662 kb on - strand, within EX31_RS07810 at 41.665 kb on + strand, within EX31_RS07810 at 41.665 kb on + strand, within EX31_RS07810 at 41.665 kb on + strand, within EX31_RS07810 at 41.665 kb on + strand, within EX31_RS07810 at 41.666 kb on - strand, within EX31_RS07810 at 41.666 kb on - strand, within EX31_RS07810 at 41.666 kb on - strand, within EX31_RS07810 at 41.666 kb on - strand, within EX31_RS07810 at 41.666 kb on - strand, within EX31_RS07810 at 41.674 kb on + strand, within EX31_RS07810 at 41.674 kb on + strand, within EX31_RS07810 at 41.703 kb on + strand, within EX31_RS07810 at 41.703 kb on + strand, within EX31_RS07810 at 41.704 kb on - strand, within EX31_RS07810 at 41.749 kb on + strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.750 kb on - strand, within EX31_RS07810 at 41.751 kb on + strand, within EX31_RS07810 at 41.751 kb on + strand, within EX31_RS07810 at 41.751 kb on + strand, within EX31_RS07810 at 41.751 kb on + strand, within EX31_RS07810 at 41.752 kb on - strand, within EX31_RS07810 at 41.752 kb on - strand, within EX31_RS07810 at 41.760 kb on + strand, within EX31_RS07810 at 41.760 kb on + strand, within EX31_RS07810
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 38,900 - +0.3 38,900 - -0.3 38,904 + +0.2 38,904 + +0.4 38,934 + +0.0 38,935 - -0.9 38,935 - +0.1 38,935 - -0.6 38,935 - +1.1 38,935 - -0.3 38,935 - -0.1 38,935 - -0.0 38,935 - +0.0 38,941 + +0.4 38,941 + +0.1 38,941 + -0.8 38,941 + -0.9 38,942 - +1.0 38,942 - +1.4 38,942 - +0.9 38,942 - -2.2 38,942 - +0.6 38,942 - -0.0 38,942 - -1.4 38,976 - +0.4 39,067 + EX31_RS07795 0.23 +0.9 39,067 + EX31_RS07795 0.23 +0.8 39,067 + EX31_RS07795 0.23 +1.0 39,068 - EX31_RS07795 0.23 -0.5 39,094 - EX31_RS07795 0.27 -0.7 39,094 - EX31_RS07795 0.27 +0.6 39,125 - EX31_RS07795 0.31 +0.4 39,125 - EX31_RS07795 0.31 -0.7 39,163 - EX31_RS07795 0.37 -1.2 39,177 + EX31_RS07795 0.39 +0.9 39,177 + EX31_RS07795 0.39 +0.2 39,177 + EX31_RS07795 0.39 -2.3 39,178 - EX31_RS07795 0.39 -0.3 39,178 - EX31_RS07795 0.39 +0.4 39,179 + EX31_RS07795 0.39 -0.8 39,180 - EX31_RS07795 0.39 -1.0 39,180 - EX31_RS07795 0.39 -0.0 39,291 + EX31_RS07795 0.55 -0.3 39,291 + EX31_RS07795 0.55 -0.1 39,292 - EX31_RS07795 0.55 +0.9 39,292 - EX31_RS07795 0.55 +0.2 39,292 - EX31_RS07795 0.55 +0.1 39,396 + EX31_RS07795 0.70 +0.1 39,397 - EX31_RS07795 0.70 -1.0 39,580 - +0.4 39,584 - +0.6 39,584 - +0.7 39,600 + +0.4 39,601 - +0.8 39,601 - -0.2 39,601 - -0.6 39,654 - -0.4 39,722 + +1.0 39,723 - -0.3 39,769 - +0.6 39,807 + -2.5 39,808 - +0.3 39,808 - +1.1 39,860 + EX31_RS07800 0.13 -0.6 39,861 - EX31_RS07800 0.13 -0.2 39,864 + EX31_RS07800 0.13 +0.9 39,864 + EX31_RS07800 0.13 -1.5 39,905 + EX31_RS07800 0.17 -1.4 39,905 + EX31_RS07800 0.17 +0.1 39,906 - EX31_RS07800 0.17 -0.3 39,906 - EX31_RS07800 0.17 -2.9 39,982 - EX31_RS07800 0.25 -1.4 39,982 - EX31_RS07800 0.25 +0.0 39,982 - EX31_RS07800 0.25 -0.1 40,017 + EX31_RS07800 0.28 +0.1 40,018 - EX31_RS07800 0.28 -0.8 40,018 - EX31_RS07800 0.28 +2.2 40,102 - EX31_RS07800 0.36 +0.3 40,121 - EX31_RS07800 0.38 +1.0 40,121 - EX31_RS07800 0.38 -0.6 40,130 + EX31_RS07800 0.38 +0.3 40,131 - EX31_RS07800 0.38 +0.1 40,131 - EX31_RS07800 0.38 -0.7 40,255 - EX31_RS07800 0.50 +1.3 40,255 - EX31_RS07800 0.50 +1.3 40,255 - EX31_RS07800 0.50 -0.1 40,255 - EX31_RS07800 0.50 -0.4 40,275 + EX31_RS07800 0.52 -0.6 40,275 + EX31_RS07800 0.52 -0.7 40,276 - EX31_RS07800 0.52 -0.1 40,276 - EX31_RS07800 0.52 +0.1 40,276 - EX31_RS07800 0.52 +0.4 40,276 - EX31_RS07800 0.52 +0.3 40,363 - EX31_RS07800 0.60 -1.3 40,475 + EX31_RS07800 0.71 +0.6 40,475 + EX31_RS07800 0.71 -1.5 40,476 - EX31_RS07800 0.71 -0.9 40,476 - EX31_RS07800 0.71 +0.2 40,476 - EX31_RS07800 0.71 -1.0 40,480 - EX31_RS07800 0.71 -0.0 40,480 - EX31_RS07800 0.71 -1.1 40,480 - EX31_RS07800 0.71 -2.7 40,789 + -0.9 40,790 - +0.1 40,835 - +0.3 40,835 - +0.0 40,836 + +1.8 40,837 - -0.5 40,837 - +0.2 40,841 + +0.3 40,841 + -0.9 40,842 - -0.2 40,842 - -0.2 40,842 - +0.7 40,842 - +0.1 40,842 - +0.0 40,842 - +0.0 40,845 + +0.1 40,846 - -1.4 40,846 - +0.7 40,846 - +0.3 40,846 - +0.0 40,846 - +0.2 40,851 + +0.9 40,852 - -0.3 40,852 - -0.9 40,852 - -0.0 40,865 + -0.1 40,867 + -0.2 41,115 + EX31_RS07805 0.45 +0.5 41,116 - EX31_RS07805 0.45 -0.3 41,116 - EX31_RS07805 0.45 -0.3 41,116 - EX31_RS07805 0.45 -0.4 41,116 - EX31_RS07805 0.45 +0.5 41,116 - EX31_RS07805 0.45 +1.4 41,116 - EX31_RS07805 0.45 -0.3 41,116 - EX31_RS07805 0.45 +0.5 41,116 - EX31_RS07805 0.45 -0.2 41,116 - EX31_RS07805 0.45 +0.7 41,165 - EX31_RS07805 0.55 -2.1 41,165 - EX31_RS07805 0.55 +1.0 41,165 - EX31_RS07805 0.55 -0.0 41,221 + EX31_RS07805 0.66 +0.3 41,221 + EX31_RS07805 0.66 -0.0 41,221 + EX31_RS07805 0.66 +0.1 41,222 - EX31_RS07805 0.66 +0.2 41,222 - EX31_RS07805 0.66 +0.2 41,222 - EX31_RS07805 0.66 +0.6 41,222 - EX31_RS07805 0.66 -0.7 41,222 - EX31_RS07805 0.66 +0.4 41,222 - EX31_RS07805 0.66 +1.0 41,222 - EX31_RS07805 0.66 +0.4 41,222 - EX31_RS07805 0.66 -0.6 41,264 + EX31_RS07805 0.75 +0.0 41,370 + -0.5 41,370 + +0.5 41,371 - +0.0 41,387 + +0.1 41,387 + +0.7 41,387 + -0.0 41,387 + -0.8 41,387 + +1.7 41,387 + +0.8 41,387 + -2.1 41,388 - -0.2 41,388 - -0.6 41,388 - +0.1 41,388 - -0.7 41,388 - -0.5 41,426 + +0.4 41,427 - +0.2 41,427 - +0.6 41,427 - +0.9 41,427 - +0.4 41,476 + +0.4 41,476 + +1.0 41,476 + +0.5 41,492 - -0.4 41,537 - +0.2 41,537 - -0.2 41,599 - +0.2 41,616 + +0.1 41,616 + -0.6 41,617 - -0.7 41,632 - +1.5 41,632 - -0.6 41,661 + EX31_RS07810 0.10 -0.3 41,662 - EX31_RS07810 0.10 -1.1 41,662 - EX31_RS07810 0.10 -1.0 41,662 - EX31_RS07810 0.10 +0.3 41,662 - EX31_RS07810 0.10 +0.5 41,662 - EX31_RS07810 0.10 -0.3 41,662 - EX31_RS07810 0.10 +0.3 41,662 - EX31_RS07810 0.10 -0.2 41,665 + EX31_RS07810 0.11 +1.0 41,665 + EX31_RS07810 0.11 +0.3 41,665 + EX31_RS07810 0.11 +0.3 41,665 + EX31_RS07810 0.11 +0.3 41,666 - EX31_RS07810 0.11 -0.3 41,666 - EX31_RS07810 0.11 -1.1 41,666 - EX31_RS07810 0.11 +0.2 41,666 - EX31_RS07810 0.11 +0.1 41,666 - EX31_RS07810 0.11 +0.7 41,674 + EX31_RS07810 0.11 +0.8 41,674 + EX31_RS07810 0.11 -0.4 41,703 + EX31_RS07810 0.14 -0.2 41,703 + EX31_RS07810 0.14 -0.1 41,704 - EX31_RS07810 0.14 +0.6 41,749 + EX31_RS07810 0.18 +0.1 41,750 - EX31_RS07810 0.18 +1.0 41,750 - EX31_RS07810 0.18 +0.1 41,750 - EX31_RS07810 0.18 +0.2 41,750 - EX31_RS07810 0.18 -0.6 41,750 - EX31_RS07810 0.18 -0.5 41,750 - EX31_RS07810 0.18 +0.3 41,750 - EX31_RS07810 0.18 -0.7 41,750 - EX31_RS07810 0.18 -0.0 41,750 - EX31_RS07810 0.18 +0.3 41,750 - EX31_RS07810 0.18 -0.2 41,751 + EX31_RS07810 0.18 -0.6 41,751 + EX31_RS07810 0.18 -0.6 41,751 + EX31_RS07810 0.18 -1.0 41,751 + EX31_RS07810 0.18 -0.1 41,752 - EX31_RS07810 0.18 +0.3 41,752 - EX31_RS07810 0.18 -0.8 41,760 + EX31_RS07810 0.19 -0.7 41,760 + EX31_RS07810 0.19 +1.1
Or see this region's nucleotide sequence