Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07530 and EX31_RS07535 are separated by 449 nucleotides EX31_RS07535 and EX31_RS07540 are separated by 289 nucleotides EX31_RS07540 and EX31_RS07545 are separated by 99 nucleotides
EX31_RS07530: EX31_RS07530 - ABC transporter ATP-binding protein, at 320,749 to 322,377
_RS07530
EX31_RS07535: EX31_RS07535 - cytochrome b/b6 domain-containing protein, at 322,827 to 323,399
_RS07535
EX31_RS07540: EX31_RS07540 - helix-turn-helix transcriptional regulator, at 323,689 to 324,066
_RS07540
EX31_RS07545: EX31_RS07545 - SDR family oxidoreductase, at 324,166 to 324,897
_RS07545
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 321.864 kb on + strand, within EX31_RS07530 at 321.865 kb on - strand, within EX31_RS07530 at 321.925 kb on - strand, within EX31_RS07530 at 321.925 kb on - strand, within EX31_RS07530 at 321.926 kb on + strand, within EX31_RS07530 at 321.926 kb on + strand, within EX31_RS07530 at 321.927 kb on - strand, within EX31_RS07530 at 322.189 kb on - strand, within EX31_RS07530 at 322.441 kb on - strand at 322.471 kb on + strand at 322.475 kb on + strand at 322.535 kb on - strand at 322.616 kb on + strand at 322.617 kb on - strand at 322.713 kb on + strand at 322.847 kb on + strand at 322.864 kb on - strand at 322.923 kb on - strand, within EX31_RS07535 at 322.997 kb on - strand, within EX31_RS07535 at 322.997 kb on - strand, within EX31_RS07535 at 322.997 kb on - strand, within EX31_RS07535 at 323.067 kb on - strand, within EX31_RS07535 at 323.074 kb on - strand, within EX31_RS07535 at 323.136 kb on + strand, within EX31_RS07535 at 323.177 kb on + strand, within EX31_RS07535 at 323.300 kb on + strand, within EX31_RS07535 at 323.368 kb on - strand at 323.391 kb on - strand at 323.402 kb on + strand at 323.403 kb on - strand at 323.515 kb on - strand at 323.537 kb on + strand at 323.538 kb on - strand at 323.717 kb on + strand at 323.718 kb on - strand at 323.718 kb on - strand at 323.768 kb on + strand, within EX31_RS07540 at 323.768 kb on + strand, within EX31_RS07540 at 323.769 kb on - strand, within EX31_RS07540 at 323.769 kb on - strand, within EX31_RS07540 at 323.769 kb on - strand, within EX31_RS07540 at 323.769 kb on - strand, within EX31_RS07540 at 323.841 kb on + strand, within EX31_RS07540 at 323.923 kb on + strand, within EX31_RS07540 at 323.980 kb on + strand, within EX31_RS07540 at 323.994 kb on + strand, within EX31_RS07540 at 323.995 kb on - strand, within EX31_RS07540 at 323.995 kb on - strand, within EX31_RS07540 at 324.032 kb on - strand at 324.032 kb on - strand at 324.052 kb on - strand at 324.073 kb on - strand at 324.073 kb on - strand at 324.075 kb on - strand at 324.075 kb on - strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.091 kb on + strand at 324.091 kb on + strand at 324.091 kb on + strand at 324.092 kb on - strand at 324.092 kb on - strand at 324.093 kb on + strand at 324.093 kb on + strand at 324.097 kb on + strand at 324.118 kb on - strand at 324.159 kb on + strand at 324.159 kb on + strand at 324.159 kb on + strand at 324.176 kb on + strand at 324.198 kb on - strand at 324.294 kb on - strand, within EX31_RS07545 at 324.357 kb on - strand, within EX31_RS07545 at 324.387 kb on + strand, within EX31_RS07545
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 321,864 + EX31_RS07530 0.68 -2.6 321,865 - EX31_RS07530 0.69 +0.4 321,925 - EX31_RS07530 0.72 +0.1 321,925 - EX31_RS07530 0.72 -1.0 321,926 + EX31_RS07530 0.72 +0.7 321,926 + EX31_RS07530 0.72 +0.7 321,927 - EX31_RS07530 0.72 +0.8 322,189 - EX31_RS07530 0.88 +1.1 322,441 - -0.6 322,471 + +0.2 322,475 + -0.4 322,535 - -0.7 322,616 + -0.5 322,617 - +2.0 322,713 + -0.0 322,847 + -1.2 322,864 - -0.5 322,923 - EX31_RS07535 0.17 -0.3 322,997 - EX31_RS07535 0.30 +0.4 322,997 - EX31_RS07535 0.30 +0.4 322,997 - EX31_RS07535 0.30 -1.1 323,067 - EX31_RS07535 0.42 -0.2 323,074 - EX31_RS07535 0.43 -1.0 323,136 + EX31_RS07535 0.54 +0.2 323,177 + EX31_RS07535 0.61 -1.5 323,300 + EX31_RS07535 0.83 -1.8 323,368 - +0.7 323,391 - -1.0 323,402 + +0.7 323,403 - -0.2 323,515 - +0.7 323,537 + -1.4 323,538 - -0.5 323,717 + -0.3 323,718 - +0.3 323,718 - +0.4 323,768 + EX31_RS07540 0.21 +0.7 323,768 + EX31_RS07540 0.21 +0.3 323,769 - EX31_RS07540 0.21 -1.0 323,769 - EX31_RS07540 0.21 -0.3 323,769 - EX31_RS07540 0.21 -1.5 323,769 - EX31_RS07540 0.21 +0.1 323,841 + EX31_RS07540 0.40 +0.7 323,923 + EX31_RS07540 0.62 +1.2 323,980 + EX31_RS07540 0.77 -0.3 323,994 + EX31_RS07540 0.81 -0.8 323,995 - EX31_RS07540 0.81 +0.0 323,995 - EX31_RS07540 0.81 -0.6 324,032 - -1.4 324,032 - +0.6 324,052 - +1.0 324,073 - -0.0 324,073 - +0.6 324,075 - +1.4 324,075 - +1.2 324,088 + +0.4 324,088 + +0.9 324,088 + -0.8 324,088 + +0.2 324,088 + +0.3 324,089 - -0.6 324,089 - -0.3 324,089 - -0.7 324,091 + -0.3 324,091 + +0.6 324,091 + +0.4 324,092 - -0.5 324,092 - +0.8 324,093 + -1.0 324,093 + -0.6 324,097 + +0.3 324,118 - -1.0 324,159 + +0.2 324,159 + +0.4 324,159 + +0.5 324,176 + +0.3 324,198 - +0.3 324,294 - EX31_RS07545 0.17 -0.2 324,357 - EX31_RS07545 0.26 -0.6 324,387 + EX31_RS07545 0.30 -0.5
Or see this region's nucleotide sequence