Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07425 and EX31_RS07430 are separated by 250 nucleotides EX31_RS07430 and EX31_RS07435 are separated by 3 nucleotides EX31_RS07435 and EX31_RS07440 overlap by 17 nucleotides
EX31_RS07425: EX31_RS07425 - MurR/RpiR family transcriptional regulator, at 298,813 to 299,664
_RS07425
EX31_RS07430: EX31_RS07430 - transporter substrate-binding domain-containing protein, at 299,915 to 300,751
_RS07430
EX31_RS07435: EX31_RS07435 - urea carboxylase-associated family protein, at 300,755 to 301,384
_RS07435
EX31_RS07440: EX31_RS07440 - urea carboxylase-associated family protein, at 301,368 to 302,015
_RS07440
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2 at 299.015 kb on - strand, within EX31_RS07425 at 299.276 kb on + strand, within EX31_RS07425 at 299.277 kb on - strand, within EX31_RS07425 at 299.298 kb on - strand, within EX31_RS07425 at 299.298 kb on - strand, within EX31_RS07425 at 299.391 kb on + strand, within EX31_RS07425 at 299.449 kb on + strand, within EX31_RS07425 at 299.450 kb on - strand, within EX31_RS07425 at 299.450 kb on - strand, within EX31_RS07425 at 299.450 kb on - strand, within EX31_RS07425 at 299.450 kb on - strand, within EX31_RS07425 at 299.450 kb on - strand, within EX31_RS07425 at 299.450 kb on - strand, within EX31_RS07425 at 299.450 kb on - strand, within EX31_RS07425 at 299.451 kb on + strand, within EX31_RS07425 at 299.452 kb on - strand, within EX31_RS07425 at 299.452 kb on - strand, within EX31_RS07425 at 299.452 kb on - strand, within EX31_RS07425 at 299.485 kb on + strand, within EX31_RS07425 at 299.485 kb on + strand, within EX31_RS07425 at 299.486 kb on - strand, within EX31_RS07425 at 299.521 kb on - strand, within EX31_RS07425 at 299.612 kb on - strand at 299.612 kb on - strand at 299.612 kb on - strand at 299.695 kb on + strand at 299.773 kb on + strand at 299.830 kb on + strand at 299.831 kb on - strand at 299.913 kb on + strand at 300.047 kb on + strand, within EX31_RS07430 at 300.212 kb on - strand, within EX31_RS07430 at 300.488 kb on - strand, within EX31_RS07430 at 300.488 kb on - strand, within EX31_RS07430 at 300.610 kb on + strand, within EX31_RS07430 at 300.611 kb on - strand, within EX31_RS07430 at 300.649 kb on + strand, within EX31_RS07430 at 300.750 kb on - strand at 300.750 kb on - strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.755 kb on - strand at 300.755 kb on - strand at 300.755 kb on - strand at 300.823 kb on + strand, within EX31_RS07435 at 300.823 kb on + strand, within EX31_RS07435 at 300.914 kb on - strand, within EX31_RS07435 at 301.012 kb on + strand, within EX31_RS07435 at 301.133 kb on + strand, within EX31_RS07435 at 301.133 kb on + strand, within EX31_RS07435 at 301.133 kb on + strand, within EX31_RS07435 at 301.220 kb on - strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.433 kb on + strand, within EX31_RS07440 at 301.434 kb on - strand, within EX31_RS07440 at 301.577 kb on - strand, within EX31_RS07440 at 301.590 kb on + strand, within EX31_RS07440 at 301.664 kb on - strand, within EX31_RS07440
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 299,015 - EX31_RS07425 0.24 +0.2 299,276 + EX31_RS07425 0.54 +1.1 299,277 - EX31_RS07425 0.54 +0.9 299,298 - EX31_RS07425 0.57 +1.4 299,298 - EX31_RS07425 0.57 -0.1 299,391 + EX31_RS07425 0.68 +0.8 299,449 + EX31_RS07425 0.75 -0.4 299,450 - EX31_RS07425 0.75 -0.2 299,450 - EX31_RS07425 0.75 +0.3 299,450 - EX31_RS07425 0.75 -1.1 299,450 - EX31_RS07425 0.75 -0.1 299,450 - EX31_RS07425 0.75 -0.2 299,450 - EX31_RS07425 0.75 +0.1 299,450 - EX31_RS07425 0.75 +0.0 299,451 + EX31_RS07425 0.75 -1.3 299,452 - EX31_RS07425 0.75 +0.7 299,452 - EX31_RS07425 0.75 -0.2 299,452 - EX31_RS07425 0.75 +0.1 299,485 + EX31_RS07425 0.79 -0.9 299,485 + EX31_RS07425 0.79 +0.0 299,486 - EX31_RS07425 0.79 +1.9 299,521 - EX31_RS07425 0.83 -0.3 299,612 - +1.0 299,612 - -0.8 299,612 - -0.9 299,695 + +0.3 299,773 + -1.6 299,830 + +0.4 299,831 - +0.4 299,913 + +0.3 300,047 + EX31_RS07430 0.16 +0.3 300,212 - EX31_RS07430 0.35 -0.1 300,488 - EX31_RS07430 0.68 -0.7 300,488 - EX31_RS07430 0.68 -0.3 300,610 + EX31_RS07430 0.83 -1.0 300,611 - EX31_RS07430 0.83 -0.9 300,649 + EX31_RS07430 0.88 -0.6 300,750 - -0.8 300,750 - -0.1 300,754 + -0.2 300,754 + +0.1 300,754 + +0.6 300,754 + +0.3 300,754 + +0.3 300,754 + -0.7 300,755 - -0.0 300,755 - -1.2 300,755 - -0.4 300,823 + EX31_RS07435 0.11 +0.1 300,823 + EX31_RS07435 0.11 +0.4 300,914 - EX31_RS07435 0.25 -2.7 301,012 + EX31_RS07435 0.41 -0.0 301,133 + EX31_RS07435 0.60 -0.9 301,133 + EX31_RS07435 0.60 +0.3 301,133 + EX31_RS07435 0.60 -0.1 301,220 - EX31_RS07435 0.74 +0.3 301,234 + EX31_RS07435 0.76 +0.5 301,234 + EX31_RS07435 0.76 -0.4 301,234 + EX31_RS07435 0.76 +0.8 301,234 + EX31_RS07435 0.76 -2.2 301,433 + EX31_RS07440 0.10 +0.7 301,434 - EX31_RS07440 0.10 +0.3 301,577 - EX31_RS07440 0.32 -0.1 301,590 + EX31_RS07440 0.34 +1.1 301,664 - EX31_RS07440 0.46 -0.9
Or see this region's nucleotide sequence