Strain Fitness in Rahnella sp. WP5 around EX31_RS07360

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07355 and EX31_RS07360 overlap by 4 nucleotidesEX31_RS07360 and EX31_RS07365 overlap by 4 nucleotides EX31_RS07355: EX31_RS07355 - protease modulator HflK, at 274,269 to 275,312 _RS07355 EX31_RS07360: EX31_RS07360 - protease modulator HflC, at 275,309 to 276,343 _RS07360 EX31_RS07365: EX31_RS07365 - membrane protein, at 276,340 to 278,298 _RS07365 Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1at 274.399 kb on - strand, within EX31_RS07355at 274.495 kb on - strand, within EX31_RS07355at 274.719 kb on + strand, within EX31_RS07355at 274.720 kb on - strand, within EX31_RS07355at 274.912 kb on + strand, within EX31_RS07355at 274.913 kb on - strand, within EX31_RS07355at 274.913 kb on - strand, within EX31_RS07355at 274.915 kb on + strand, within EX31_RS07355at 274.916 kb on - strand, within EX31_RS07355at 274.916 kb on - strand, within EX31_RS07355at 275.089 kb on - strand, within EX31_RS07355at 275.482 kb on + strand, within EX31_RS07360at 275.488 kb on - strand, within EX31_RS07360at 275.490 kb on - strand, within EX31_RS07360at 275.524 kb on + strand, within EX31_RS07360at 275.733 kb on + strand, within EX31_RS07360at 275.734 kb on - strand, within EX31_RS07360at 275.815 kb on + strand, within EX31_RS07360at 275.870 kb on - strand, within EX31_RS07360at 275.880 kb on - strand, within EX31_RS07360at 275.880 kb on - strand, within EX31_RS07360at 275.969 kb on - strand, within EX31_RS07360at 275.969 kb on - strand, within EX31_RS07360at 275.971 kb on - strand, within EX31_RS07360at 276.045 kb on - strand, within EX31_RS07360at 276.125 kb on - strand, within EX31_RS07360at 276.393 kb on + strandat 276.505 kb on - strandat 276.829 kb on + strand, within EX31_RS07365at 276.843 kb on + strand, within EX31_RS07365at 276.951 kb on + strand, within EX31_RS07365at 276.965 kb on + strand, within EX31_RS07365at 277.027 kb on - strand, within EX31_RS07365at 277.027 kb on - strand, within EX31_RS07365at 277.208 kb on - strand, within EX31_RS07365at 277.208 kb on - strand, within EX31_RS07365at 277.208 kb on - strand, within EX31_RS07365at 277.208 kb on - strand, within EX31_RS07365at 277.265 kb on - strand, within EX31_RS07365

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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274,399 - EX31_RS07355 0.12 +1.2
274,495 - EX31_RS07355 0.22 -0.4
274,719 + EX31_RS07355 0.43 +0.5
274,720 - EX31_RS07355 0.43 -0.3
274,912 + EX31_RS07355 0.62 -0.9
274,913 - EX31_RS07355 0.62 +0.6
274,913 - EX31_RS07355 0.62 +0.4
274,915 + EX31_RS07355 0.62 -0.3
274,916 - EX31_RS07355 0.62 +0.3
274,916 - EX31_RS07355 0.62 +0.9
275,089 - EX31_RS07355 0.79 +1.0
275,482 + EX31_RS07360 0.17 +0.5
275,488 - EX31_RS07360 0.17 -0.9
275,490 - EX31_RS07360 0.17 -0.4
275,524 + EX31_RS07360 0.21 +1.5
275,733 + EX31_RS07360 0.41 -1.9
275,734 - EX31_RS07360 0.41 -1.3
275,815 + EX31_RS07360 0.49 -1.6
275,870 - EX31_RS07360 0.54 +0.7
275,880 - EX31_RS07360 0.55 -0.1
275,880 - EX31_RS07360 0.55 -1.7
275,969 - EX31_RS07360 0.64 +0.1
275,969 - EX31_RS07360 0.64 -1.8
275,971 - EX31_RS07360 0.64 -0.2
276,045 - EX31_RS07360 0.71 -1.1
276,125 - EX31_RS07360 0.79 -2.0
276,393 + +0.3
276,505 - -0.2
276,829 + EX31_RS07365 0.25 -1.3
276,843 + EX31_RS07365 0.26 -0.0
276,951 + EX31_RS07365 0.31 +0.1
276,965 + EX31_RS07365 0.32 +1.0
277,027 - EX31_RS07365 0.35 +0.3
277,027 - EX31_RS07365 0.35 -0.0
277,208 - EX31_RS07365 0.44 -0.7
277,208 - EX31_RS07365 0.44 -0.0
277,208 - EX31_RS07365 0.44 +0.4
277,208 - EX31_RS07365 0.44 +0.9
277,265 - EX31_RS07365 0.47 -0.4

Or see this region's nucleotide sequence