Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07025 and EX31_RS07030 are separated by 115 nucleotides EX31_RS07030 and EX31_RS07035 overlap by 4 nucleotides EX31_RS07035 and EX31_RS25225 are separated by 224 nucleotides EX31_RS25225 and EX31_RS07040 overlap by 32 nucleotides
EX31_RS07025: EX31_RS07025 - xanthine dehydrogenase small subunit, at 196,089 to 197,492
_RS07025
EX31_RS07030: EX31_RS07030 - TetR family transcriptional regulator, at 197,608 to 198,276
_RS07030
EX31_RS07035: EX31_RS07035 - guanine deaminase, at 198,273 to 199,625
_RS07035
EX31_RS25225: EX31_RS25225 - hypothetical protein, at 199,850 to 200,440
_RS25225
EX31_RS07040: EX31_RS07040 - ROK family transcriptional regulator, at 200,409 to 201,584
_RS07040
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 197.422 kb on + strand at 197.422 kb on + strand at 197.423 kb on - strand at 197.428 kb on - strand at 197.430 kb on + strand at 197.431 kb on - strand at 197.584 kb on + strand at 197.584 kb on + strand at 197.585 kb on - strand at 197.659 kb on - strand at 197.683 kb on - strand, within EX31_RS07030 at 197.695 kb on - strand, within EX31_RS07030 at 197.735 kb on + strand, within EX31_RS07030 at 197.736 kb on - strand, within EX31_RS07030 at 197.736 kb on - strand, within EX31_RS07030 at 197.736 kb on - strand, within EX31_RS07030 at 197.736 kb on - strand, within EX31_RS07030 at 197.739 kb on + strand, within EX31_RS07030 at 197.739 kb on + strand, within EX31_RS07030 at 197.739 kb on + strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.740 kb on - strand, within EX31_RS07030 at 197.771 kb on + strand, within EX31_RS07030 at 197.772 kb on - strand, within EX31_RS07030 at 197.772 kb on - strand, within EX31_RS07030 at 197.791 kb on - strand, within EX31_RS07030 at 197.791 kb on - strand, within EX31_RS07030 at 197.791 kb on - strand, within EX31_RS07030 at 197.791 kb on - strand, within EX31_RS07030 at 197.791 kb on - strand, within EX31_RS07030 at 197.791 kb on - strand, within EX31_RS07030 at 197.791 kb on - strand, within EX31_RS07030 at 197.898 kb on - strand, within EX31_RS07030 at 197.909 kb on + strand, within EX31_RS07030 at 197.982 kb on + strand, within EX31_RS07030 at 197.994 kb on - strand, within EX31_RS07030 at 197.994 kb on - strand, within EX31_RS07030 at 198.110 kb on + strand, within EX31_RS07030 at 198.110 kb on + strand, within EX31_RS07030 at 198.110 kb on + strand, within EX31_RS07030 at 198.111 kb on - strand, within EX31_RS07030 at 198.261 kb on + strand at 198.306 kb on + strand at 198.306 kb on + strand at 198.311 kb on - strand at 198.332 kb on - strand at 198.332 kb on - strand at 198.332 kb on - strand at 198.341 kb on - strand at 198.341 kb on - strand at 198.341 kb on - strand at 198.341 kb on - strand at 198.341 kb on - strand at 198.477 kb on - strand, within EX31_RS07035 at 198.477 kb on - strand, within EX31_RS07035 at 198.535 kb on + strand, within EX31_RS07035 at 198.535 kb on + strand, within EX31_RS07035 at 198.535 kb on + strand, within EX31_RS07035 at 198.536 kb on - strand, within EX31_RS07035 at 198.832 kb on + strand, within EX31_RS07035 at 198.833 kb on - strand, within EX31_RS07035 at 198.844 kb on + strand, within EX31_RS07035 at 198.912 kb on - strand, within EX31_RS07035 at 198.919 kb on + strand, within EX31_RS07035 at 198.919 kb on + strand, within EX31_RS07035 at 198.919 kb on + strand, within EX31_RS07035 at 198.920 kb on - strand, within EX31_RS07035 at 198.942 kb on - strand, within EX31_RS07035 at 198.942 kb on - strand, within EX31_RS07035 at 199.136 kb on + strand, within EX31_RS07035 at 199.136 kb on + strand, within EX31_RS07035 at 199.279 kb on + strand, within EX31_RS07035 at 199.301 kb on + strand, within EX31_RS07035 at 199.370 kb on + strand, within EX31_RS07035 at 199.529 kb on + strand at 199.529 kb on + strand at 199.529 kb on + strand at 199.771 kb on - strand at 199.813 kb on + strand at 199.833 kb on - strand at 199.843 kb on + strand at 199.921 kb on + strand, within EX31_RS25225 at 199.922 kb on - strand, within EX31_RS25225 at 199.922 kb on - strand, within EX31_RS25225 at 199.923 kb on + strand, within EX31_RS25225 at 199.924 kb on - strand, within EX31_RS25225 at 200.025 kb on - strand, within EX31_RS25225 at 200.238 kb on + strand, within EX31_RS25225 at 200.238 kb on + strand, within EX31_RS25225 at 200.318 kb on - strand, within EX31_RS25225 at 200.387 kb on - strand at 200.451 kb on + strand at 200.548 kb on + strand, within EX31_RS07040 at 200.591 kb on + strand, within EX31_RS07040 at 200.591 kb on + strand, within EX31_RS07040
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 197,422 + -1.0 197,422 + +0.7 197,423 - -0.9 197,428 - -0.5 197,430 + -0.3 197,431 - +1.1 197,584 + +0.3 197,584 + -0.4 197,585 - +0.2 197,659 - -0.4 197,683 - EX31_RS07030 0.11 -0.6 197,695 - EX31_RS07030 0.13 +0.2 197,735 + EX31_RS07030 0.19 +0.5 197,736 - EX31_RS07030 0.19 +0.8 197,736 - EX31_RS07030 0.19 -1.3 197,736 - EX31_RS07030 0.19 -1.2 197,736 - EX31_RS07030 0.19 -0.5 197,739 + EX31_RS07030 0.20 +0.5 197,739 + EX31_RS07030 0.20 +1.0 197,739 + EX31_RS07030 0.20 +1.6 197,740 - EX31_RS07030 0.20 +0.9 197,740 - EX31_RS07030 0.20 -0.7 197,740 - EX31_RS07030 0.20 -0.0 197,740 - EX31_RS07030 0.20 +0.1 197,740 - EX31_RS07030 0.20 +0.0 197,740 - EX31_RS07030 0.20 -0.9 197,740 - EX31_RS07030 0.20 -0.1 197,740 - EX31_RS07030 0.20 +0.3 197,740 - EX31_RS07030 0.20 +0.4 197,740 - EX31_RS07030 0.20 +1.0 197,740 - EX31_RS07030 0.20 +1.8 197,740 - EX31_RS07030 0.20 +0.4 197,740 - EX31_RS07030 0.20 -0.4 197,740 - EX31_RS07030 0.20 -0.1 197,740 - EX31_RS07030 0.20 +0.4 197,740 - EX31_RS07030 0.20 +0.5 197,740 - EX31_RS07030 0.20 -0.5 197,740 - EX31_RS07030 0.20 +0.4 197,740 - EX31_RS07030 0.20 +1.1 197,740 - EX31_RS07030 0.20 +1.5 197,740 - EX31_RS07030 0.20 +0.1 197,740 - EX31_RS07030 0.20 +0.0 197,740 - EX31_RS07030 0.20 -0.3 197,771 + EX31_RS07030 0.24 -0.5 197,772 - EX31_RS07030 0.25 -0.7 197,772 - EX31_RS07030 0.25 -0.9 197,791 - EX31_RS07030 0.27 +0.3 197,791 - EX31_RS07030 0.27 +0.3 197,791 - EX31_RS07030 0.27 -0.1 197,791 - EX31_RS07030 0.27 +1.5 197,791 - EX31_RS07030 0.27 -0.2 197,791 - EX31_RS07030 0.27 +0.8 197,791 - EX31_RS07030 0.27 -1.6 197,898 - EX31_RS07030 0.43 -0.5 197,909 + EX31_RS07030 0.45 -0.2 197,982 + EX31_RS07030 0.56 +0.4 197,994 - EX31_RS07030 0.58 +1.3 197,994 - EX31_RS07030 0.58 -1.8 198,110 + EX31_RS07030 0.75 +0.4 198,110 + EX31_RS07030 0.75 +0.1 198,110 + EX31_RS07030 0.75 -0.8 198,111 - EX31_RS07030 0.75 -0.4 198,261 + +0.5 198,306 + +1.0 198,306 + +0.4 198,311 - -0.4 198,332 - -0.0 198,332 - -1.3 198,332 - -1.1 198,341 - -0.2 198,341 - -0.4 198,341 - -0.6 198,341 - -0.3 198,341 - -0.5 198,477 - EX31_RS07035 0.15 -1.4 198,477 - EX31_RS07035 0.15 +0.5 198,535 + EX31_RS07035 0.19 -0.4 198,535 + EX31_RS07035 0.19 -1.0 198,535 + EX31_RS07035 0.19 -2.4 198,536 - EX31_RS07035 0.19 -2.3 198,832 + EX31_RS07035 0.41 +0.1 198,833 - EX31_RS07035 0.41 -0.8 198,844 + EX31_RS07035 0.42 -0.4 198,912 - EX31_RS07035 0.47 -0.7 198,919 + EX31_RS07035 0.48 +0.1 198,919 + EX31_RS07035 0.48 +0.2 198,919 + EX31_RS07035 0.48 -0.4 198,920 - EX31_RS07035 0.48 +1.1 198,942 - EX31_RS07035 0.49 -0.6 198,942 - EX31_RS07035 0.49 -1.9 199,136 + EX31_RS07035 0.64 -0.1 199,136 + EX31_RS07035 0.64 +0.4 199,279 + EX31_RS07035 0.74 -1.0 199,301 + EX31_RS07035 0.76 -1.0 199,370 + EX31_RS07035 0.81 -0.9 199,529 + -0.2 199,529 + -0.6 199,529 + +1.1 199,771 - +1.6 199,813 + +0.3 199,833 - +0.9 199,843 + +1.6 199,921 + EX31_RS25225 0.12 -0.3 199,922 - EX31_RS25225 0.12 +0.5 199,922 - EX31_RS25225 0.12 +0.3 199,923 + EX31_RS25225 0.12 -1.2 199,924 - EX31_RS25225 0.13 -0.1 200,025 - EX31_RS25225 0.30 -0.9 200,238 + EX31_RS25225 0.66 -0.2 200,238 + EX31_RS25225 0.66 -2.1 200,318 - EX31_RS25225 0.79 -1.0 200,387 - +0.0 200,451 + -0.0 200,548 + EX31_RS07040 0.12 +0.2 200,591 + EX31_RS07040 0.15 +1.3 200,591 + EX31_RS07040 0.15 +1.1
Or see this region's nucleotide sequence