Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06945 and EX31_RS06950 are separated by 16 nucleotides EX31_RS06950 and EX31_RS06955 are separated by 309 nucleotides EX31_RS06955 and EX31_RS06960 are separated by 163 nucleotides
EX31_RS06945: EX31_RS06945 - helix-turn-helix domain-containing protein, at 177,510 to 178,472
_RS06945
EX31_RS06950: EX31_RS06950 - DNA-3-methyladenine glycosylase I, at 178,489 to 179,055
_RS06950
EX31_RS06955: EX31_RS06955 - hypothetical protein, at 179,365 to 179,913
_RS06955
EX31_RS06960: EX31_RS06960 - DNA replication terminus site-binding protein, at 180,077 to 181,012
_RS06960
Position (kb) 179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.543 kb on - strand at 178.795 kb on - strand, within EX31_RS06950 at 179.177 kb on - strand at 179.256 kb on + strand at 179.257 kb on - strand at 179.257 kb on - strand at 179.333 kb on - strand at 179.333 kb on - strand at 179.337 kb on + strand at 179.388 kb on - strand at 179.388 kb on - strand at 179.482 kb on - strand, within EX31_RS06955 at 179.482 kb on - strand, within EX31_RS06955 at 179.486 kb on - strand, within EX31_RS06955 at 179.575 kb on - strand, within EX31_RS06955 at 179.678 kb on + strand, within EX31_RS06955 at 179.691 kb on + strand, within EX31_RS06955 at 179.714 kb on - strand, within EX31_RS06955 at 179.751 kb on - strand, within EX31_RS06955 at 179.892 kb on + strand at 179.906 kb on + strand at 179.920 kb on - strand at 179.947 kb on + strand at 179.948 kb on - strand at 179.949 kb on + strand at 179.949 kb on + strand at 179.949 kb on + strand at 179.954 kb on + strand at 179.954 kb on + strand at 180.011 kb on - strand at 180.025 kb on + strand at 180.086 kb on + strand at 180.086 kb on + strand at 180.086 kb on + strand at 180.093 kb on + strand at 180.189 kb on + strand, within EX31_RS06960 at 180.193 kb on + strand, within EX31_RS06960 at 180.193 kb on + strand, within EX31_RS06960 at 180.194 kb on - strand, within EX31_RS06960 at 180.207 kb on + strand, within EX31_RS06960 at 180.207 kb on + strand, within EX31_RS06960 at 180.227 kb on - strand, within EX31_RS06960 at 180.288 kb on + strand, within EX31_RS06960 at 180.319 kb on + strand, within EX31_RS06960 at 180.320 kb on - strand, within EX31_RS06960 at 180.320 kb on - strand, within EX31_RS06960 at 180.323 kb on - strand, within EX31_RS06960 at 180.504 kb on + strand, within EX31_RS06960 at 180.504 kb on + strand, within EX31_RS06960 at 180.504 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.508 kb on + strand, within EX31_RS06960 at 180.558 kb on - strand, within EX31_RS06960 at 180.558 kb on - strand, within EX31_RS06960 at 180.604 kb on + strand, within EX31_RS06960 at 180.604 kb on + strand, within EX31_RS06960 at 180.604 kb on + strand, within EX31_RS06960 at 180.605 kb on - strand, within EX31_RS06960 at 180.607 kb on + strand, within EX31_RS06960 at 180.610 kb on + strand, within EX31_RS06960 at 180.683 kb on + strand, within EX31_RS06960 at 180.684 kb on - strand, within EX31_RS06960 at 180.709 kb on + strand, within EX31_RS06960 at 180.710 kb on - strand, within EX31_RS06960 at 180.861 kb on + strand, within EX31_RS06960 at 180.892 kb on + strand, within EX31_RS06960 at 180.892 kb on + strand, within EX31_RS06960 at 180.893 kb on - strand, within EX31_RS06960 at 180.893 kb on - strand, within EX31_RS06960
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 178,543 - +0.9 178,795 - EX31_RS06950 0.54 -0.9 179,177 - -0.2 179,256 + +0.1 179,257 - -0.5 179,257 - +1.0 179,333 - -0.2 179,333 - -0.2 179,337 + -0.6 179,388 - -0.7 179,388 - -1.8 179,482 - EX31_RS06955 0.21 +0.4 179,482 - EX31_RS06955 0.21 -0.1 179,486 - EX31_RS06955 0.22 -1.4 179,575 - EX31_RS06955 0.38 +0.7 179,678 + EX31_RS06955 0.57 -1.1 179,691 + EX31_RS06955 0.59 -0.4 179,714 - EX31_RS06955 0.64 -0.0 179,751 - EX31_RS06955 0.70 -2.5 179,892 + +0.1 179,906 + +0.2 179,920 - -0.4 179,947 + -1.2 179,948 - -1.6 179,949 + +1.1 179,949 + +0.3 179,949 + -2.2 179,954 + +0.1 179,954 + -0.6 180,011 - -1.3 180,025 + -1.9 180,086 + +0.9 180,086 + -0.5 180,086 + -0.0 180,093 + -0.4 180,189 + EX31_RS06960 0.12 +0.2 180,193 + EX31_RS06960 0.12 -1.7 180,193 + EX31_RS06960 0.12 +1.1 180,194 - EX31_RS06960 0.12 -0.3 180,207 + EX31_RS06960 0.14 -0.7 180,207 + EX31_RS06960 0.14 -0.6 180,227 - EX31_RS06960 0.16 +0.1 180,288 + EX31_RS06960 0.23 +0.6 180,319 + EX31_RS06960 0.26 -0.2 180,320 - EX31_RS06960 0.26 +1.0 180,320 - EX31_RS06960 0.26 +0.7 180,323 - EX31_RS06960 0.26 +2.0 180,504 + EX31_RS06960 0.46 -0.2 180,504 + EX31_RS06960 0.46 -0.3 180,504 + EX31_RS06960 0.46 -0.4 180,508 + EX31_RS06960 0.46 -0.7 180,508 + EX31_RS06960 0.46 -2.0 180,508 + EX31_RS06960 0.46 +0.6 180,508 + EX31_RS06960 0.46 +0.2 180,558 - EX31_RS06960 0.51 -0.7 180,558 - EX31_RS06960 0.51 +1.3 180,604 + EX31_RS06960 0.56 -0.7 180,604 + EX31_RS06960 0.56 +2.0 180,604 + EX31_RS06960 0.56 +1.4 180,605 - EX31_RS06960 0.56 +1.1 180,607 + EX31_RS06960 0.57 -0.2 180,610 + EX31_RS06960 0.57 +0.5 180,683 + EX31_RS06960 0.65 -0.9 180,684 - EX31_RS06960 0.65 -0.2 180,709 + EX31_RS06960 0.68 -1.0 180,710 - EX31_RS06960 0.68 -0.8 180,861 + EX31_RS06960 0.84 -1.0 180,892 + EX31_RS06960 0.87 +1.2 180,892 + EX31_RS06960 0.87 +0.2 180,893 - EX31_RS06960 0.87 -0.8 180,893 - EX31_RS06960 0.87 -1.9
Or see this region's nucleotide sequence