Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06545 and EX31_RS06550 are separated by 87 nucleotides EX31_RS06550 and EX31_RS06555 overlap by 4 nucleotides
EX31_RS06545: EX31_RS06545 - YchO/YchP family invasin, at 83,539 to 85,047
_RS06545
EX31_RS06550: EX31_RS06550 - two-component system response regulator NarL, at 85,135 to 85,785
_RS06550
EX31_RS06555: EX31_RS06555 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 85,782 to 87,572
_RS06555
Position (kb) 85
86 Strain fitness (log2 ratio) -2
-1
0
1 at 84.238 kb on + strand, within EX31_RS06545 at 84.259 kb on + strand, within EX31_RS06545 at 84.259 kb on + strand, within EX31_RS06545 at 84.259 kb on + strand, within EX31_RS06545 at 84.280 kb on + strand, within EX31_RS06545 at 84.282 kb on + strand, within EX31_RS06545 at 84.297 kb on + strand, within EX31_RS06545 at 84.297 kb on + strand, within EX31_RS06545 at 84.297 kb on + strand, within EX31_RS06545 at 84.297 kb on + strand, within EX31_RS06545 at 84.352 kb on + strand, within EX31_RS06545 at 84.356 kb on + strand, within EX31_RS06545 at 84.364 kb on + strand, within EX31_RS06545 at 84.478 kb on + strand, within EX31_RS06545 at 84.479 kb on - strand, within EX31_RS06545 at 84.666 kb on + strand, within EX31_RS06545 at 84.856 kb on - strand, within EX31_RS06545 at 84.919 kb on + strand at 84.920 kb on - strand at 84.949 kb on - strand at 85.146 kb on + strand at 85.146 kb on + strand at 85.242 kb on + strand, within EX31_RS06550 at 85.469 kb on + strand, within EX31_RS06550 at 85.531 kb on + strand, within EX31_RS06550 at 85.603 kb on - strand, within EX31_RS06550 at 85.738 kb on - strand at 85.738 kb on - strand at 85.738 kb on - strand at 85.738 kb on - strand at 85.738 kb on - strand at 85.738 kb on - strand at 85.761 kb on + strand at 85.762 kb on - strand at 85.785 kb on + strand at 85.785 kb on + strand at 85.785 kb on + strand at 85.884 kb on + strand at 85.890 kb on - strand at 86.017 kb on - strand, within EX31_RS06555 at 86.041 kb on + strand, within EX31_RS06555 at 86.042 kb on - strand, within EX31_RS06555 at 86.171 kb on + strand, within EX31_RS06555 at 86.171 kb on + strand, within EX31_RS06555 at 86.418 kb on + strand, within EX31_RS06555 at 86.419 kb on - strand, within EX31_RS06555 at 86.483 kb on + strand, within EX31_RS06555 at 86.483 kb on + strand, within EX31_RS06555 at 86.487 kb on + strand, within EX31_RS06555 at 86.487 kb on + strand, within EX31_RS06555 at 86.487 kb on + strand, within EX31_RS06555 at 86.487 kb on + strand, within EX31_RS06555 at 86.488 kb on - strand, within EX31_RS06555 at 86.488 kb on - strand, within EX31_RS06555 at 86.488 kb on - strand, within EX31_RS06555 at 86.488 kb on - strand, within EX31_RS06555 at 86.488 kb on - strand, within EX31_RS06555 at 86.488 kb on - strand, within EX31_RS06555 at 86.552 kb on - strand, within EX31_RS06555
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 84,238 + EX31_RS06545 0.46 -0.5 84,259 + EX31_RS06545 0.48 +0.1 84,259 + EX31_RS06545 0.48 -0.6 84,259 + EX31_RS06545 0.48 -0.7 84,280 + EX31_RS06545 0.49 +0.8 84,282 + EX31_RS06545 0.49 -0.6 84,297 + EX31_RS06545 0.50 -0.7 84,297 + EX31_RS06545 0.50 -0.4 84,297 + EX31_RS06545 0.50 -0.2 84,297 + EX31_RS06545 0.50 -0.7 84,352 + EX31_RS06545 0.54 +0.2 84,356 + EX31_RS06545 0.54 +0.2 84,364 + EX31_RS06545 0.55 -0.2 84,478 + EX31_RS06545 0.62 -0.1 84,479 - EX31_RS06545 0.62 +0.2 84,666 + EX31_RS06545 0.75 -1.2 84,856 - EX31_RS06545 0.87 +1.0 84,919 + -0.1 84,920 - -0.7 84,949 - -1.0 85,146 + +0.0 85,146 + -0.1 85,242 + EX31_RS06550 0.16 -1.9 85,469 + EX31_RS06550 0.51 -0.6 85,531 + EX31_RS06550 0.61 -0.6 85,603 - EX31_RS06550 0.72 -0.2 85,738 - +0.4 85,738 - -0.2 85,738 - +0.8 85,738 - +0.1 85,738 - +0.9 85,738 - +0.4 85,761 + +0.0 85,762 - -1.6 85,785 + -0.1 85,785 + +0.9 85,785 + +0.0 85,884 + +1.6 85,890 - +0.9 86,017 - EX31_RS06555 0.13 -0.5 86,041 + EX31_RS06555 0.14 +0.4 86,042 - EX31_RS06555 0.15 +0.2 86,171 + EX31_RS06555 0.22 +0.5 86,171 + EX31_RS06555 0.22 -0.8 86,418 + EX31_RS06555 0.36 +0.6 86,419 - EX31_RS06555 0.36 +0.3 86,483 + EX31_RS06555 0.39 -1.0 86,483 + EX31_RS06555 0.39 +1.2 86,487 + EX31_RS06555 0.39 -0.3 86,487 + EX31_RS06555 0.39 -1.7 86,487 + EX31_RS06555 0.39 +0.6 86,487 + EX31_RS06555 0.39 +0.5 86,488 - EX31_RS06555 0.39 -0.7 86,488 - EX31_RS06555 0.39 -1.5 86,488 - EX31_RS06555 0.39 -1.7 86,488 - EX31_RS06555 0.39 -0.8 86,488 - EX31_RS06555 0.39 -1.1 86,488 - EX31_RS06555 0.39 -0.9 86,552 - EX31_RS06555 0.43 +0.1
Or see this region's nucleotide sequence