Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06510 and EX31_RS06515 overlap by 17 nucleotides EX31_RS06515 and EX31_RS06520 overlap by 4 nucleotides EX31_RS06520 and EX31_RS06525 are separated by 217 nucleotides
EX31_RS06510: EX31_RS06510 - carboxypeptidase M32, at 75,191 to 76,672
_RS06510
EX31_RS06515: EX31_RS06515 - two-component system sensor histidine kinase RstB, at 76,656 to 77,999
_RS06515
EX31_RS06520: EX31_RS06520 - two-component system response regulator RstA, at 77,996 to 78,727
_RS06520
EX31_RS06525: EX31_RS06525 - hypothetical protein, at 78,945 to 79,364
_RS06525
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 75.868 kb on - strand, within EX31_RS06510 at 75.931 kb on - strand, within EX31_RS06510 at 75.947 kb on + strand, within EX31_RS06510 at 75.947 kb on + strand, within EX31_RS06510 at 75.947 kb on + strand, within EX31_RS06510 at 75.948 kb on - strand, within EX31_RS06510 at 75.948 kb on - strand, within EX31_RS06510 at 75.948 kb on - strand, within EX31_RS06510 at 75.948 kb on - strand, within EX31_RS06510 at 75.948 kb on - strand, within EX31_RS06510 at 75.948 kb on - strand, within EX31_RS06510 at 75.948 kb on - strand, within EX31_RS06510 at 76.024 kb on + strand, within EX31_RS06510 at 76.025 kb on - strand, within EX31_RS06510 at 76.200 kb on - strand, within EX31_RS06510 at 76.200 kb on - strand, within EX31_RS06510 at 76.200 kb on - strand, within EX31_RS06510 at 76.453 kb on + strand, within EX31_RS06510 at 76.453 kb on + strand, within EX31_RS06510 at 76.453 kb on + strand, within EX31_RS06510 at 76.454 kb on - strand, within EX31_RS06510 at 76.454 kb on - strand, within EX31_RS06510 at 76.604 kb on - strand at 76.610 kb on + strand at 76.611 kb on - strand at 76.968 kb on + strand, within EX31_RS06515 at 77.093 kb on - strand, within EX31_RS06515 at 77.174 kb on + strand, within EX31_RS06515 at 77.206 kb on + strand, within EX31_RS06515 at 77.206 kb on + strand, within EX31_RS06515 at 77.206 kb on + strand, within EX31_RS06515 at 77.206 kb on + strand, within EX31_RS06515 at 77.206 kb on + strand, within EX31_RS06515 at 77.206 kb on + strand, within EX31_RS06515 at 77.207 kb on - strand, within EX31_RS06515 at 77.207 kb on - strand, within EX31_RS06515 at 77.207 kb on - strand, within EX31_RS06515 at 77.207 kb on - strand, within EX31_RS06515 at 77.207 kb on - strand, within EX31_RS06515 at 77.207 kb on - strand, within EX31_RS06515 at 77.316 kb on + strand, within EX31_RS06515 at 77.316 kb on + strand, within EX31_RS06515 at 77.316 kb on + strand, within EX31_RS06515 at 77.328 kb on - strand, within EX31_RS06515 at 77.382 kb on - strand, within EX31_RS06515 at 77.453 kb on + strand, within EX31_RS06515 at 77.453 kb on + strand, within EX31_RS06515 at 77.453 kb on + strand, within EX31_RS06515 at 77.453 kb on + strand, within EX31_RS06515 at 77.610 kb on - strand, within EX31_RS06515 at 77.611 kb on + strand, within EX31_RS06515 at 77.611 kb on + strand, within EX31_RS06515 at 77.612 kb on - strand, within EX31_RS06515 at 77.612 kb on - strand, within EX31_RS06515 at 77.612 kb on - strand, within EX31_RS06515 at 77.612 kb on - strand, within EX31_RS06515 at 77.612 kb on - strand, within EX31_RS06515 at 77.612 kb on - strand, within EX31_RS06515 at 77.612 kb on - strand, within EX31_RS06515 at 77.647 kb on + strand, within EX31_RS06515 at 77.648 kb on - strand, within EX31_RS06515 at 77.680 kb on + strand, within EX31_RS06515 at 77.680 kb on + strand, within EX31_RS06515 at 77.799 kb on - strand, within EX31_RS06515 at 77.858 kb on - strand, within EX31_RS06515 at 77.920 kb on + strand at 78.006 kb on - strand at 78.036 kb on + strand at 78.044 kb on - strand at 78.044 kb on - strand at 78.088 kb on - strand, within EX31_RS06520 at 78.088 kb on - strand, within EX31_RS06520 at 78.088 kb on - strand, within EX31_RS06520 at 78.088 kb on - strand, within EX31_RS06520 at 78.089 kb on + strand, within EX31_RS06520 at 78.089 kb on + strand, within EX31_RS06520 at 78.090 kb on - strand, within EX31_RS06520 at 78.090 kb on - strand, within EX31_RS06520 at 78.090 kb on - strand, within EX31_RS06520 at 78.090 kb on - strand, within EX31_RS06520 at 78.144 kb on + strand, within EX31_RS06520 at 78.144 kb on + strand, within EX31_RS06520 at 78.144 kb on + strand, within EX31_RS06520 at 78.144 kb on + strand, within EX31_RS06520 at 78.145 kb on - strand, within EX31_RS06520 at 78.145 kb on - strand, within EX31_RS06520 at 78.145 kb on - strand, within EX31_RS06520 at 78.187 kb on + strand, within EX31_RS06520 at 78.358 kb on + strand, within EX31_RS06520 at 78.358 kb on + strand, within EX31_RS06520 at 78.381 kb on - strand, within EX31_RS06520 at 78.381 kb on - strand, within EX31_RS06520 at 78.435 kb on + strand, within EX31_RS06520 at 78.435 kb on + strand, within EX31_RS06520 at 78.435 kb on + strand, within EX31_RS06520 at 78.436 kb on - strand, within EX31_RS06520 at 78.436 kb on - strand, within EX31_RS06520 at 78.436 kb on - strand, within EX31_RS06520 at 78.528 kb on - strand, within EX31_RS06520 at 78.539 kb on + strand, within EX31_RS06520 at 78.539 kb on + strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.540 kb on - strand, within EX31_RS06520 at 78.572 kb on - strand, within EX31_RS06520 at 78.708 kb on - strand at 78.742 kb on - strand at 78.757 kb on + strand at 78.758 kb on - strand at 78.758 kb on - strand at 78.763 kb on - strand at 78.794 kb on - strand at 78.799 kb on - strand at 78.801 kb on + strand at 78.802 kb on - strand at 78.802 kb on - strand at 78.854 kb on + strand at 78.862 kb on + strand at 78.863 kb on - strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.870 kb on + strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.871 kb on - strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.872 kb on + strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.873 kb on - strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.874 kb on + strand at 78.882 kb on + strand at 78.882 kb on + strand at 78.894 kb on + strand at 78.895 kb on - strand at 78.895 kb on - strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.896 kb on + strand at 78.897 kb on - strand at 78.897 kb on - strand at 78.905 kb on + strand at 78.905 kb on + strand at 78.906 kb on - strand at 78.909 kb on + strand at 78.999 kb on + strand, within EX31_RS06525 at 78.999 kb on + strand, within EX31_RS06525 at 78.999 kb on + strand, within EX31_RS06525 at 78.999 kb on + strand, within EX31_RS06525
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 75,868 - EX31_RS06510 0.46 +0.1 75,931 - EX31_RS06510 0.50 +0.9 75,947 + EX31_RS06510 0.51 +1.3 75,947 + EX31_RS06510 0.51 +0.8 75,947 + EX31_RS06510 0.51 +0.7 75,948 - EX31_RS06510 0.51 -0.2 75,948 - EX31_RS06510 0.51 -0.6 75,948 - EX31_RS06510 0.51 -1.1 75,948 - EX31_RS06510 0.51 +0.8 75,948 - EX31_RS06510 0.51 -0.7 75,948 - EX31_RS06510 0.51 +0.7 75,948 - EX31_RS06510 0.51 +0.7 76,024 + EX31_RS06510 0.56 -0.4 76,025 - EX31_RS06510 0.56 -0.7 76,200 - EX31_RS06510 0.68 -0.5 76,200 - EX31_RS06510 0.68 -0.3 76,200 - EX31_RS06510 0.68 -0.0 76,453 + EX31_RS06510 0.85 +0.4 76,453 + EX31_RS06510 0.85 -0.0 76,453 + EX31_RS06510 0.85 -0.8 76,454 - EX31_RS06510 0.85 -0.3 76,454 - EX31_RS06510 0.85 +0.1 76,604 - +0.6 76,610 + -0.3 76,611 - +0.1 76,968 + EX31_RS06515 0.23 +0.6 77,093 - EX31_RS06515 0.33 +0.5 77,174 + EX31_RS06515 0.39 -2.6 77,206 + EX31_RS06515 0.41 -1.7 77,206 + EX31_RS06515 0.41 +0.3 77,206 + EX31_RS06515 0.41 -1.3 77,206 + EX31_RS06515 0.41 -3.4 77,206 + EX31_RS06515 0.41 -0.0 77,206 + EX31_RS06515 0.41 -1.4 77,207 - EX31_RS06515 0.41 +1.0 77,207 - EX31_RS06515 0.41 -0.7 77,207 - EX31_RS06515 0.41 -2.2 77,207 - EX31_RS06515 0.41 -0.2 77,207 - EX31_RS06515 0.41 +0.1 77,207 - EX31_RS06515 0.41 -0.5 77,316 + EX31_RS06515 0.49 +0.1 77,316 + EX31_RS06515 0.49 -0.6 77,316 + EX31_RS06515 0.49 +0.5 77,328 - EX31_RS06515 0.50 +0.3 77,382 - EX31_RS06515 0.54 -0.6 77,453 + EX31_RS06515 0.59 -1.5 77,453 + EX31_RS06515 0.59 -1.6 77,453 + EX31_RS06515 0.59 +0.3 77,453 + EX31_RS06515 0.59 -1.4 77,610 - EX31_RS06515 0.71 -0.6 77,611 + EX31_RS06515 0.71 -2.4 77,611 + EX31_RS06515 0.71 -0.7 77,612 - EX31_RS06515 0.71 -0.7 77,612 - EX31_RS06515 0.71 -0.5 77,612 - EX31_RS06515 0.71 +0.1 77,612 - EX31_RS06515 0.71 +0.0 77,612 - EX31_RS06515 0.71 -0.3 77,612 - EX31_RS06515 0.71 +0.3 77,612 - EX31_RS06515 0.71 -1.4 77,647 + EX31_RS06515 0.74 +0.6 77,648 - EX31_RS06515 0.74 +0.4 77,680 + EX31_RS06515 0.76 -0.6 77,680 + EX31_RS06515 0.76 -0.3 77,799 - EX31_RS06515 0.85 +0.3 77,858 - EX31_RS06515 0.89 -1.4 77,920 + +1.4 78,006 - -2.1 78,036 + +0.9 78,044 - -1.7 78,044 - -1.2 78,088 - EX31_RS06520 0.13 -1.1 78,088 - EX31_RS06520 0.13 -0.7 78,088 - EX31_RS06520 0.13 -0.3 78,088 - EX31_RS06520 0.13 +0.3 78,089 + EX31_RS06520 0.13 -0.4 78,089 + EX31_RS06520 0.13 -0.8 78,090 - EX31_RS06520 0.13 -0.7 78,090 - EX31_RS06520 0.13 -0.5 78,090 - EX31_RS06520 0.13 +0.3 78,090 - EX31_RS06520 0.13 -0.4 78,144 + EX31_RS06520 0.20 -0.2 78,144 + EX31_RS06520 0.20 -0.1 78,144 + EX31_RS06520 0.20 +0.2 78,144 + EX31_RS06520 0.20 -0.5 78,145 - EX31_RS06520 0.20 -0.9 78,145 - EX31_RS06520 0.20 -0.1 78,145 - EX31_RS06520 0.20 -2.4 78,187 + EX31_RS06520 0.26 +0.5 78,358 + EX31_RS06520 0.49 -0.6 78,358 + EX31_RS06520 0.49 -0.1 78,381 - EX31_RS06520 0.53 -0.6 78,381 - EX31_RS06520 0.53 -0.1 78,435 + EX31_RS06520 0.60 -0.4 78,435 + EX31_RS06520 0.60 -1.0 78,435 + EX31_RS06520 0.60 +0.7 78,436 - EX31_RS06520 0.60 -1.1 78,436 - EX31_RS06520 0.60 -0.1 78,436 - EX31_RS06520 0.60 +0.5 78,528 - EX31_RS06520 0.73 +0.6 78,539 + EX31_RS06520 0.74 +0.5 78,539 + EX31_RS06520 0.74 -0.8 78,540 - EX31_RS06520 0.74 +0.1 78,540 - EX31_RS06520 0.74 -1.7 78,540 - EX31_RS06520 0.74 +1.1 78,540 - EX31_RS06520 0.74 +0.1 78,540 - EX31_RS06520 0.74 +0.5 78,572 - EX31_RS06520 0.79 +1.6 78,708 - +0.3 78,742 - +0.2 78,757 + -0.6 78,758 - +0.3 78,758 - +0.2 78,763 - -0.7 78,794 - -0.1 78,799 - -0.3 78,801 + -0.7 78,802 - -0.2 78,802 - +0.1 78,854 + +0.9 78,862 + -0.7 78,863 - -0.4 78,870 + -1.4 78,870 + +0.8 78,870 + +0.5 78,870 + -1.9 78,870 + -1.7 78,871 - +0.7 78,871 - +0.4 78,871 - +0.4 78,871 - -0.0 78,871 - +0.8 78,871 - -0.3 78,871 - -2.1 78,872 + +0.4 78,872 + -0.1 78,872 + -0.7 78,872 + -0.0 78,872 + -0.5 78,872 + -0.4 78,873 - +0.4 78,873 - +1.8 78,873 - -0.4 78,873 - -0.0 78,873 - -1.4 78,873 - +0.7 78,873 - -0.3 78,874 + +0.2 78,874 + -0.5 78,874 + -0.7 78,874 + +0.2 78,874 + -0.5 78,874 + +0.7 78,882 + +0.2 78,882 + -0.3 78,894 + +0.1 78,895 - -0.2 78,895 - +0.9 78,896 + -0.5 78,896 + +0.5 78,896 + -0.2 78,896 + -0.2 78,896 + -0.6 78,896 + -0.8 78,896 + -0.1 78,896 + +0.0 78,897 - +0.4 78,897 - -0.5 78,905 + +0.4 78,905 + +0.2 78,906 - +0.1 78,909 + +0.3 78,999 + EX31_RS06525 0.13 -0.4 78,999 + EX31_RS06525 0.13 -0.7 78,999 + EX31_RS06525 0.13 +2.7 78,999 + EX31_RS06525 0.13 -0.1
Or see this region's nucleotide sequence