Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05875 and EX31_RS05880 are separated by 190 nucleotides EX31_RS05880 and EX31_RS05885 overlap by 4 nucleotides EX31_RS05885 and EX31_RS05890 are separated by 221 nucleotides EX31_RS05890 and EX31_RS05895 are separated by 103 nucleotides
EX31_RS05875: EX31_RS05875 - autotransporter domain-containing esterase, at 329,417 to 331,423
_RS05875
EX31_RS05880: EX31_RS05880 - DNA-3-methyladenine glycosylase I, at 331,614 to 332,186
_RS05880
EX31_RS05885: EX31_RS05885 - N-acetyltransferase, at 332,183 to 332,626
_RS05885
EX31_RS05890: EX31_RS05890 - OmpA family lipoprotein, at 332,848 to 333,510
_RS05890
EX31_RS05895: EX31_RS05895 - LacI family DNA-binding transcriptional regulator, at 333,614 to 334,621
_RS05895
Position (kb) 332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 331.208 kb on + strand, within EX31_RS05875 at 331.208 kb on + strand, within EX31_RS05875 at 331.208 kb on + strand, within EX31_RS05875 at 331.208 kb on + strand, within EX31_RS05875 at 331.208 kb on + strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.209 kb on - strand, within EX31_RS05875 at 331.246 kb on - strand at 331.246 kb on - strand at 331.246 kb on - strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.320 kb on + strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.321 kb on - strand at 331.353 kb on - strand at 331.353 kb on - strand at 331.397 kb on + strand at 331.398 kb on - strand at 331.442 kb on + strand at 331.442 kb on + strand at 331.443 kb on - strand at 331.464 kb on + strand at 331.464 kb on + strand at 331.465 kb on - strand at 331.471 kb on - strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.477 kb on + strand at 331.478 kb on - strand at 331.478 kb on - strand at 331.478 kb on - strand at 331.478 kb on - strand at 331.478 kb on - strand at 331.482 kb on - strand at 331.494 kb on + strand at 331.494 kb on + strand at 331.498 kb on + strand at 331.498 kb on + strand at 331.498 kb on + strand at 331.498 kb on + strand at 331.499 kb on - strand at 331.499 kb on - strand at 331.499 kb on - strand at 331.535 kb on - strand at 331.535 kb on - strand at 331.557 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.590 kb on + strand at 331.591 kb on - strand at 331.591 kb on - strand at 331.591 kb on - strand at 331.591 kb on - strand at 331.591 kb on - strand at 331.591 kb on - strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.599 kb on + strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.600 kb on - strand at 331.601 kb on + strand at 331.601 kb on + strand at 331.601 kb on + strand at 331.601 kb on + strand at 331.601 kb on + strand at 331.601 kb on + strand at 331.601 kb on + strand at 331.602 kb on - strand at 331.602 kb on - strand at 331.602 kb on - strand at 331.602 kb on - strand at 331.602 kb on - strand at 331.602 kb on - strand at 331.602 kb on - strand at 331.602 kb on - strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.623 kb on - strand at 331.657 kb on - strand at 331.657 kb on - strand at 331.657 kb on - strand at 331.665 kb on + strand at 331.666 kb on - strand at 331.785 kb on + strand, within EX31_RS05880 at 331.785 kb on + strand, within EX31_RS05880 at 331.786 kb on - strand, within EX31_RS05880 at 331.923 kb on + strand, within EX31_RS05880 at 331.924 kb on - strand, within EX31_RS05880 at 331.924 kb on - strand, within EX31_RS05880 at 332.151 kb on + strand at 332.151 kb on + strand at 332.151 kb on + strand at 332.152 kb on - strand at 332.276 kb on + strand, within EX31_RS05885 at 332.277 kb on - strand, within EX31_RS05885 at 332.372 kb on - strand, within EX31_RS05885 at 332.412 kb on + strand, within EX31_RS05885 at 332.474 kb on + strand, within EX31_RS05885 at 332.499 kb on - strand, within EX31_RS05885 at 332.528 kb on + strand, within EX31_RS05885 at 332.528 kb on + strand, within EX31_RS05885 at 332.529 kb on - strand, within EX31_RS05885 at 332.591 kb on + strand at 332.591 kb on + strand at 332.591 kb on + strand at 332.591 kb on + strand at 332.592 kb on - strand at 332.592 kb on - strand at 332.624 kb on + strand at 332.624 kb on + strand at 332.624 kb on + strand at 332.624 kb on + strand at 332.625 kb on - strand at 332.682 kb on - strand at 332.702 kb on - strand at 332.800 kb on + strand at 332.801 kb on - strand at 332.844 kb on + strand at 332.844 kb on + strand at 332.844 kb on + strand at 332.844 kb on + strand at 332.844 kb on + strand at 332.845 kb on - strand at 332.861 kb on + strand at 332.862 kb on - strand at 332.862 kb on - strand at 332.879 kb on + strand at 332.879 kb on + strand at 332.879 kb on + strand at 332.923 kb on + strand, within EX31_RS05890 at 332.997 kb on + strand, within EX31_RS05890 at 333.012 kb on + strand, within EX31_RS05890 at 333.082 kb on + strand, within EX31_RS05890 at 333.082 kb on + strand, within EX31_RS05890 at 333.085 kb on + strand, within EX31_RS05890 at 333.085 kb on + strand, within EX31_RS05890 at 333.085 kb on + strand, within EX31_RS05890 at 333.085 kb on + strand, within EX31_RS05890 at 333.085 kb on + strand, within EX31_RS05890 at 333.085 kb on + strand, within EX31_RS05890 at 333.085 kb on + strand, within EX31_RS05890 at 333.086 kb on - strand, within EX31_RS05890 at 333.086 kb on - strand, within EX31_RS05890 at 333.086 kb on - strand, within EX31_RS05890 at 333.183 kb on + strand, within EX31_RS05890 at 333.183 kb on + strand, within EX31_RS05890 at 333.184 kb on - strand, within EX31_RS05890 at 333.184 kb on - strand, within EX31_RS05890 at 333.299 kb on - strand, within EX31_RS05890 at 333.378 kb on + strand, within EX31_RS05890 at 333.379 kb on - strand, within EX31_RS05890 at 333.379 kb on - strand, within EX31_RS05890 at 333.379 kb on - strand, within EX31_RS05890 at 333.379 kb on - strand, within EX31_RS05890 at 333.379 kb on - strand, within EX31_RS05890 at 333.405 kb on - strand, within EX31_RS05890 at 333.405 kb on - strand, within EX31_RS05890 at 333.482 kb on + strand at 333.508 kb on + strand at 333.525 kb on + strand at 333.526 kb on - strand at 333.526 kb on - strand at 333.569 kb on + strand at 333.570 kb on - strand at 333.570 kb on - strand at 333.570 kb on - strand at 333.613 kb on + strand at 333.613 kb on + strand at 333.614 kb on - strand at 333.614 kb on - strand at 333.614 kb on - strand at 333.614 kb on - strand at 333.614 kb on - strand at 333.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 331,208 + EX31_RS05875 0.89 -0.2 331,208 + EX31_RS05875 0.89 -0.9 331,208 + EX31_RS05875 0.89 -0.9 331,208 + EX31_RS05875 0.89 -0.5 331,208 + EX31_RS05875 0.89 -0.4 331,209 - EX31_RS05875 0.89 -0.6 331,209 - EX31_RS05875 0.89 +0.9 331,209 - EX31_RS05875 0.89 -0.5 331,209 - EX31_RS05875 0.89 +0.2 331,209 - EX31_RS05875 0.89 +0.0 331,209 - EX31_RS05875 0.89 -0.0 331,209 - EX31_RS05875 0.89 -1.6 331,209 - EX31_RS05875 0.89 -1.5 331,246 - -0.9 331,246 - -1.0 331,246 - +0.1 331,320 + +0.6 331,320 + -2.1 331,320 + +0.0 331,320 + +1.6 331,320 + +0.1 331,320 + +0.4 331,320 + -0.3 331,320 + +0.7 331,320 + +0.9 331,320 + +0.1 331,320 + -0.0 331,320 + -0.2 331,320 + -0.6 331,320 + -0.1 331,320 + -0.7 331,320 + -0.6 331,320 + -0.4 331,321 - +0.6 331,321 - -0.7 331,321 - +0.2 331,321 - +0.1 331,321 - +0.2 331,321 - +0.1 331,321 - +0.5 331,321 - +1.3 331,321 - +0.0 331,321 - +0.8 331,321 - +0.3 331,321 - +0.1 331,321 - +0.0 331,321 - +0.1 331,321 - -1.7 331,321 - -1.2 331,321 - -0.1 331,321 - -0.2 331,321 - +0.4 331,321 - -0.2 331,321 - -1.7 331,321 - -0.1 331,321 - -1.1 331,353 - +0.0 331,353 - +0.1 331,397 + -0.1 331,398 - -0.1 331,442 + +0.3 331,442 + -0.9 331,443 - -0.3 331,464 + -1.2 331,464 + +0.9 331,465 - +1.0 331,471 - -0.5 331,477 + +0.4 331,477 + -0.5 331,477 + +0.6 331,477 + +0.2 331,477 + -0.1 331,477 + +0.0 331,477 + +0.2 331,477 + -0.9 331,477 + +0.8 331,478 - -0.1 331,478 - +0.4 331,478 - -0.4 331,478 - -0.0 331,478 - +0.1 331,482 - -0.4 331,494 + -0.2 331,494 + +0.3 331,498 + -1.5 331,498 + +0.3 331,498 + +0.9 331,498 + +0.0 331,499 - +1.5 331,499 - +0.5 331,499 - +0.2 331,535 - +1.8 331,535 - +0.1 331,557 + -0.0 331,590 + -0.2 331,590 + +0.1 331,590 + +0.3 331,590 + -1.1 331,590 + +0.1 331,590 + +1.3 331,590 + +0.1 331,590 + -0.6 331,590 + -0.2 331,591 - -0.1 331,591 - +0.8 331,591 - -1.4 331,591 - -0.5 331,591 - +0.5 331,591 - +0.2 331,599 + -0.0 331,599 + -0.1 331,599 + +0.1 331,599 + -0.2 331,599 + -0.3 331,599 + +0.1 331,599 + -0.3 331,599 + +0.7 331,599 + -0.6 331,599 + -0.2 331,599 + -0.5 331,599 + -0.0 331,599 + -0.0 331,599 + +0.2 331,600 - -0.5 331,600 - -0.2 331,600 - +1.0 331,600 - +1.0 331,600 - +1.2 331,600 - -0.2 331,600 - -0.9 331,600 - +0.4 331,600 - -0.2 331,600 - -0.6 331,600 - +1.1 331,600 - +0.1 331,600 - -0.4 331,601 + +0.4 331,601 + +0.2 331,601 + +0.2 331,601 + +0.1 331,601 + +0.3 331,601 + -1.4 331,601 + -0.1 331,602 - -1.0 331,602 - -0.2 331,602 - +0.3 331,602 - +0.2 331,602 - -0.1 331,602 - -0.2 331,602 - -0.6 331,602 - +0.6 331,622 + +0.1 331,622 + -0.1 331,623 - +0.7 331,657 - +0.2 331,657 - -0.3 331,657 - +0.4 331,665 + +0.6 331,666 - +0.2 331,785 + EX31_RS05880 0.30 -1.7 331,785 + EX31_RS05880 0.30 -0.0 331,786 - EX31_RS05880 0.30 -0.2 331,923 + EX31_RS05880 0.54 +1.3 331,924 - EX31_RS05880 0.54 -0.0 331,924 - EX31_RS05880 0.54 -0.5 332,151 + -0.9 332,151 + -0.2 332,151 + +0.3 332,152 - +1.0 332,276 + EX31_RS05885 0.21 -0.2 332,277 - EX31_RS05885 0.21 +0.1 332,372 - EX31_RS05885 0.43 -1.7 332,412 + EX31_RS05885 0.52 -1.4 332,474 + EX31_RS05885 0.66 -0.2 332,499 - EX31_RS05885 0.71 +0.0 332,528 + EX31_RS05885 0.78 -0.6 332,528 + EX31_RS05885 0.78 +0.0 332,529 - EX31_RS05885 0.78 -1.1 332,591 + -0.2 332,591 + +0.0 332,591 + -0.4 332,591 + +0.0 332,592 - +0.5 332,592 - +0.0 332,624 + -0.1 332,624 + +0.3 332,624 + -0.2 332,624 + +0.1 332,625 - +0.2 332,682 - -0.9 332,702 - +0.7 332,800 + -0.6 332,801 - +1.4 332,844 + +0.6 332,844 + -0.1 332,844 + -0.9 332,844 + -0.6 332,844 + +0.6 332,845 - +0.1 332,861 + -0.5 332,862 - +0.6 332,862 - +0.7 332,879 + +0.3 332,879 + -0.3 332,879 + +0.9 332,923 + EX31_RS05890 0.11 +0.1 332,997 + EX31_RS05890 0.22 -0.2 333,012 + EX31_RS05890 0.25 -0.1 333,082 + EX31_RS05890 0.35 -0.1 333,082 + EX31_RS05890 0.35 +0.2 333,085 + EX31_RS05890 0.36 -0.7 333,085 + EX31_RS05890 0.36 +0.6 333,085 + EX31_RS05890 0.36 -0.1 333,085 + EX31_RS05890 0.36 -0.8 333,085 + EX31_RS05890 0.36 -0.4 333,085 + EX31_RS05890 0.36 +0.3 333,085 + EX31_RS05890 0.36 -0.3 333,086 - EX31_RS05890 0.36 +0.1 333,086 - EX31_RS05890 0.36 -0.0 333,086 - EX31_RS05890 0.36 +1.1 333,183 + EX31_RS05890 0.51 +0.1 333,183 + EX31_RS05890 0.51 +0.2 333,184 - EX31_RS05890 0.51 -0.5 333,184 - EX31_RS05890 0.51 +0.4 333,299 - EX31_RS05890 0.68 -0.1 333,378 + EX31_RS05890 0.80 +0.0 333,379 - EX31_RS05890 0.80 -0.1 333,379 - EX31_RS05890 0.80 +0.2 333,379 - EX31_RS05890 0.80 +1.1 333,379 - EX31_RS05890 0.80 -0.2 333,379 - EX31_RS05890 0.80 +0.7 333,405 - EX31_RS05890 0.84 +0.1 333,405 - EX31_RS05890 0.84 -0.1 333,482 + +0.6 333,508 + -0.4 333,525 + -1.1 333,526 - +0.8 333,526 - +0.6 333,569 + +0.1 333,570 - -0.6 333,570 - -0.4 333,570 - -0.0 333,613 + -0.4 333,613 + -1.0 333,614 - -0.1 333,614 - -0.2 333,614 - -0.0 333,614 - -0.5 333,614 - -0.4 333,614 - +0.1
Or see this region's nucleotide sequence