Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05815 and EX31_RS05820 are separated by 93 nucleotides EX31_RS05820 and EX31_RS05825 are separated by 136 nucleotides EX31_RS05825 and EX31_RS05830 are separated by 134 nucleotides
EX31_RS05815: EX31_RS05815 - LysE family translocator, at 316,643 to 317,251
_RS05815
EX31_RS05820: EX31_RS05820 - MltR family transcriptional regulator, at 317,345 to 317,893
_RS05820
EX31_RS05825: EX31_RS05825 - mannitol-1-phosphate 5-dehydrogenase, at 318,030 to 319,178
_RS05825
EX31_RS05830: EX31_RS05830 - PTS mannitol transporter subunit IICBA, at 319,313 to 321,226
_RS05830
Position (kb) 318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 317.071 kb on + strand, within EX31_RS05815 at 317.133 kb on + strand, within EX31_RS05815 at 317.134 kb on - strand, within EX31_RS05815 at 317.134 kb on - strand, within EX31_RS05815 at 317.134 kb on - strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.145 kb on + strand, within EX31_RS05815 at 317.146 kb on - strand, within EX31_RS05815 at 317.250 kb on - strand at 317.250 kb on - strand at 317.258 kb on + strand at 317.259 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.286 kb on - strand at 317.333 kb on + strand at 317.346 kb on + strand at 317.347 kb on - strand at 317.347 kb on - strand at 317.383 kb on + strand at 317.383 kb on + strand at 317.384 kb on - strand at 317.446 kb on - strand, within EX31_RS05820 at 317.577 kb on + strand, within EX31_RS05820 at 317.578 kb on - strand, within EX31_RS05820 at 317.592 kb on + strand, within EX31_RS05820 at 317.592 kb on + strand, within EX31_RS05820 at 317.593 kb on - strand, within EX31_RS05820 at 317.621 kb on + strand, within EX31_RS05820 at 317.621 kb on + strand, within EX31_RS05820 at 317.621 kb on + strand, within EX31_RS05820 at 317.668 kb on - strand, within EX31_RS05820 at 317.684 kb on + strand, within EX31_RS05820 at 317.684 kb on + strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.685 kb on - strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.736 kb on + strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.737 kb on - strand, within EX31_RS05820 at 317.748 kb on + strand, within EX31_RS05820 at 317.749 kb on - strand, within EX31_RS05820 at 317.848 kb on + strand at 317.849 kb on - strand at 317.849 kb on - strand at 317.862 kb on - strand at 317.862 kb on - strand at 317.900 kb on + strand at 317.900 kb on + strand at 317.900 kb on + strand at 317.900 kb on + strand at 317.901 kb on - strand at 317.901 kb on - strand at 317.901 kb on - strand at 317.901 kb on - strand at 317.901 kb on - strand at 318.028 kb on + strand at 318.029 kb on - strand at 318.029 kb on - strand at 318.029 kb on - strand at 318.029 kb on - strand at 318.047 kb on - strand at 318.047 kb on - strand at 318.047 kb on - strand at 318.153 kb on - strand, within EX31_RS05825 at 318.178 kb on + strand, within EX31_RS05825 at 318.506 kb on - strand, within EX31_RS05825 at 318.545 kb on + strand, within EX31_RS05825 at 318.777 kb on + strand, within EX31_RS05825 at 318.777 kb on + strand, within EX31_RS05825 at 318.996 kb on - strand, within EX31_RS05825 at 318.996 kb on - strand, within EX31_RS05825 at 319.122 kb on + strand at 319.122 kb on + strand at 319.123 kb on - strand at 319.128 kb on - strand at 319.168 kb on - strand at 319.179 kb on - strand at 319.181 kb on + strand at 319.181 kb on + strand at 319.182 kb on - strand at 319.182 kb on - strand at 319.182 kb on - strand at 319.182 kb on - strand at 319.204 kb on + strand at 319.204 kb on + strand at 319.204 kb on + strand at 319.204 kb on + strand at 319.204 kb on + strand at 319.205 kb on - strand at 319.205 kb on - strand at 319.209 kb on + strand at 319.210 kb on - strand at 319.214 kb on + strand at 319.214 kb on + strand at 319.228 kb on + strand at 319.272 kb on + strand at 319.272 kb on + strand at 319.273 kb on - strand at 319.286 kb on + strand at 319.287 kb on - strand at 319.289 kb on + strand at 319.290 kb on - strand at 319.290 kb on - strand at 319.290 kb on - strand at 319.297 kb on + strand at 319.298 kb on - strand at 319.298 kb on - strand at 319.304 kb on + strand at 319.304 kb on + strand at 319.305 kb on - strand at 319.314 kb on + strand at 319.327 kb on + strand at 319.327 kb on + strand at 319.328 kb on - strand at 319.373 kb on - strand at 319.429 kb on + strand at 319.429 kb on + strand at 319.430 kb on - strand at 319.587 kb on + strand, within EX31_RS05830 at 319.587 kb on + strand, within EX31_RS05830 at 319.587 kb on + strand, within EX31_RS05830 at 319.588 kb on - strand, within EX31_RS05830 at 319.588 kb on - strand, within EX31_RS05830 at 319.588 kb on - strand, within EX31_RS05830 at 319.629 kb on + strand, within EX31_RS05830 at 319.629 kb on + strand, within EX31_RS05830 at 319.629 kb on + strand, within EX31_RS05830 at 319.629 kb on + strand, within EX31_RS05830 at 319.629 kb on + strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.630 kb on - strand, within EX31_RS05830 at 319.644 kb on + strand, within EX31_RS05830 at 319.645 kb on - strand, within EX31_RS05830 at 319.723 kb on + strand, within EX31_RS05830 at 319.723 kb on + strand, within EX31_RS05830 at 319.724 kb on - strand, within EX31_RS05830 at 319.806 kb on + strand, within EX31_RS05830 at 319.807 kb on - strand, within EX31_RS05830 at 319.807 kb on - strand, within EX31_RS05830 at 319.854 kb on + strand, within EX31_RS05830 at 319.854 kb on + strand, within EX31_RS05830 at 319.855 kb on - strand, within EX31_RS05830 at 319.855 kb on - strand, within EX31_RS05830 at 319.855 kb on - strand, within EX31_RS05830 at 319.942 kb on + strand, within EX31_RS05830 at 319.942 kb on + strand, within EX31_RS05830 at 319.942 kb on + strand, within EX31_RS05830 at 319.942 kb on + strand, within EX31_RS05830 at 320.092 kb on + strand, within EX31_RS05830 at 320.092 kb on + strand, within EX31_RS05830 at 320.092 kb on + strand, within EX31_RS05830 at 320.092 kb on + strand, within EX31_RS05830 at 320.096 kb on + strand, within EX31_RS05830 at 320.096 kb on + strand, within EX31_RS05830 at 320.096 kb on + strand, within EX31_RS05830 at 320.096 kb on + strand, within EX31_RS05830 at 320.096 kb on + strand, within EX31_RS05830 at 320.097 kb on - strand, within EX31_RS05830 at 320.097 kb on - strand, within EX31_RS05830 at 320.097 kb on - strand, within EX31_RS05830 at 320.146 kb on + strand, within EX31_RS05830 at 320.147 kb on - strand, within EX31_RS05830 at 320.147 kb on - strand, within EX31_RS05830 at 320.162 kb on - strand, within EX31_RS05830 at 320.171 kb on - strand, within EX31_RS05830 at 320.171 kb on - strand, within EX31_RS05830
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 317,071 + EX31_RS05815 0.70 +0.1 317,133 + EX31_RS05815 0.80 +0.2 317,134 - EX31_RS05815 0.81 +0.3 317,134 - EX31_RS05815 0.81 +0.1 317,134 - EX31_RS05815 0.81 +0.7 317,145 + EX31_RS05815 0.82 -0.3 317,145 + EX31_RS05815 0.82 +0.2 317,145 + EX31_RS05815 0.82 +0.1 317,145 + EX31_RS05815 0.82 -1.1 317,146 - EX31_RS05815 0.83 -0.2 317,250 - +0.3 317,250 - -0.0 317,258 + +0.0 317,259 - -0.3 317,286 - -0.5 317,286 - -0.6 317,286 - +0.2 317,286 - +0.4 317,286 - +0.9 317,333 + +0.7 317,346 + -0.2 317,347 - -0.1 317,347 - +0.1 317,383 + +0.4 317,383 + +0.7 317,384 - +0.4 317,446 - EX31_RS05820 0.18 -0.8 317,577 + EX31_RS05820 0.42 +0.7 317,578 - EX31_RS05820 0.42 -0.1 317,592 + EX31_RS05820 0.45 -0.4 317,592 + EX31_RS05820 0.45 +0.4 317,593 - EX31_RS05820 0.45 +0.9 317,621 + EX31_RS05820 0.50 +0.9 317,621 + EX31_RS05820 0.50 -0.2 317,621 + EX31_RS05820 0.50 +1.2 317,668 - EX31_RS05820 0.59 -0.2 317,684 + EX31_RS05820 0.62 -1.5 317,684 + EX31_RS05820 0.62 +0.4 317,685 - EX31_RS05820 0.62 -1.4 317,685 - EX31_RS05820 0.62 +0.7 317,685 - EX31_RS05820 0.62 +0.6 317,685 - EX31_RS05820 0.62 -0.1 317,685 - EX31_RS05820 0.62 -0.4 317,685 - EX31_RS05820 0.62 +0.0 317,685 - EX31_RS05820 0.62 +0.4 317,736 + EX31_RS05820 0.71 +0.6 317,736 + EX31_RS05820 0.71 -0.2 317,736 + EX31_RS05820 0.71 +0.2 317,736 + EX31_RS05820 0.71 -0.1 317,737 - EX31_RS05820 0.71 -0.2 317,737 - EX31_RS05820 0.71 -0.2 317,737 - EX31_RS05820 0.71 -0.2 317,737 - EX31_RS05820 0.71 -0.2 317,737 - EX31_RS05820 0.71 -0.0 317,737 - EX31_RS05820 0.71 -0.0 317,748 + EX31_RS05820 0.73 -0.8 317,749 - EX31_RS05820 0.74 +1.7 317,848 + +0.5 317,849 - +0.9 317,849 - -0.3 317,862 - -0.5 317,862 - -0.5 317,900 + -0.4 317,900 + -0.2 317,900 + +0.4 317,900 + +0.3 317,901 - +0.6 317,901 - -0.5 317,901 - -0.5 317,901 - +1.9 317,901 - +0.6 318,028 + -0.8 318,029 - -0.3 318,029 - -0.0 318,029 - +0.5 318,029 - -0.4 318,047 - +1.0 318,047 - -0.1 318,047 - -0.7 318,153 - EX31_RS05825 0.11 +0.5 318,178 + EX31_RS05825 0.13 +3.5 318,506 - EX31_RS05825 0.41 -0.5 318,545 + EX31_RS05825 0.45 +2.9 318,777 + EX31_RS05825 0.65 +0.6 318,777 + EX31_RS05825 0.65 +0.6 318,996 - EX31_RS05825 0.84 -0.5 318,996 - EX31_RS05825 0.84 +1.9 319,122 + -0.1 319,122 + +0.6 319,123 - +0.9 319,128 - +0.9 319,168 - -1.4 319,179 - +0.7 319,181 + +2.9 319,181 + -0.2 319,182 - -2.2 319,182 - -1.3 319,182 - -0.7 319,182 - -2.3 319,204 + +0.1 319,204 + -1.5 319,204 + -1.1 319,204 + -1.6 319,204 + +2.9 319,205 - +1.2 319,205 - +1.2 319,209 + -1.6 319,210 - +0.9 319,214 + -1.5 319,214 + -1.7 319,228 + -1.3 319,272 + -1.1 319,272 + -0.0 319,273 - -0.0 319,286 + -0.2 319,287 - +0.1 319,289 + -1.2 319,290 - +0.6 319,290 - -0.1 319,290 - -0.6 319,297 + -3.3 319,298 - -0.5 319,298 - -0.3 319,304 + +0.1 319,304 + -0.1 319,305 - +0.1 319,314 + -2.3 319,327 + +0.6 319,327 + +1.9 319,328 - +0.1 319,373 - -0.1 319,429 + +1.6 319,429 + -0.4 319,430 - -1.3 319,587 + EX31_RS05830 0.14 +0.2 319,587 + EX31_RS05830 0.14 -1.1 319,587 + EX31_RS05830 0.14 +0.4 319,588 - EX31_RS05830 0.14 -1.3 319,588 - EX31_RS05830 0.14 -0.0 319,588 - EX31_RS05830 0.14 -0.1 319,629 + EX31_RS05830 0.17 -0.5 319,629 + EX31_RS05830 0.17 -0.2 319,629 + EX31_RS05830 0.17 +0.2 319,629 + EX31_RS05830 0.17 -0.1 319,629 + EX31_RS05830 0.17 -0.7 319,630 - EX31_RS05830 0.17 +1.7 319,630 - EX31_RS05830 0.17 +0.6 319,630 - EX31_RS05830 0.17 -0.1 319,630 - EX31_RS05830 0.17 -0.3 319,630 - EX31_RS05830 0.17 +1.7 319,630 - EX31_RS05830 0.17 +0.6 319,630 - EX31_RS05830 0.17 +0.2 319,630 - EX31_RS05830 0.17 +1.6 319,630 - EX31_RS05830 0.17 -1.7 319,644 + EX31_RS05830 0.17 -0.8 319,645 - EX31_RS05830 0.17 -0.3 319,723 + EX31_RS05830 0.21 -0.2 319,723 + EX31_RS05830 0.21 -0.1 319,724 - EX31_RS05830 0.21 -0.7 319,806 + EX31_RS05830 0.26 +0.2 319,807 - EX31_RS05830 0.26 -0.3 319,807 - EX31_RS05830 0.26 +0.6 319,854 + EX31_RS05830 0.28 -0.2 319,854 + EX31_RS05830 0.28 +0.6 319,855 - EX31_RS05830 0.28 -0.1 319,855 - EX31_RS05830 0.28 -1.8 319,855 - EX31_RS05830 0.28 -0.7 319,942 + EX31_RS05830 0.33 -1.1 319,942 + EX31_RS05830 0.33 -0.1 319,942 + EX31_RS05830 0.33 -0.1 319,942 + EX31_RS05830 0.33 -2.1 320,092 + EX31_RS05830 0.41 +0.4 320,092 + EX31_RS05830 0.41 -0.2 320,092 + EX31_RS05830 0.41 -0.6 320,092 + EX31_RS05830 0.41 +0.3 320,096 + EX31_RS05830 0.41 +0.5 320,096 + EX31_RS05830 0.41 +0.6 320,096 + EX31_RS05830 0.41 +0.1 320,096 + EX31_RS05830 0.41 -0.4 320,096 + EX31_RS05830 0.41 -0.5 320,097 - EX31_RS05830 0.41 -1.4 320,097 - EX31_RS05830 0.41 +0.2 320,097 - EX31_RS05830 0.41 -0.3 320,146 + EX31_RS05830 0.44 +0.6 320,147 - EX31_RS05830 0.44 +0.5 320,147 - EX31_RS05830 0.44 -1.1 320,162 - EX31_RS05830 0.44 -0.1 320,171 - EX31_RS05830 0.45 -0.0 320,171 - EX31_RS05830 0.45 +0.2
Or see this region's nucleotide sequence