Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05250 and EX31_RS05255 are separated by 20 nucleotides EX31_RS05255 and EX31_RS05260 are separated by 119 nucleotides EX31_RS05260 and EX31_RS05265 are separated by 69 nucleotides
EX31_RS05250: EX31_RS05250 - PTS sugar transporter subunit IIC, at 187,792 to 189,057
_RS05250
EX31_RS05255: EX31_RS05255 - hypothetical protein, at 189,078 to 189,383
_RS05255
EX31_RS05260: EX31_RS05260 - 4-oxalocrotonate tautomerase, at 189,503 to 189,685
_RS05260
EX31_RS05265: EX31_RS05265 - peptide-methionine (S)-S-oxide reductase MsrA, at 189,755 to 190,297
_RS05265
Position (kb) 189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.088 kb on - strand, within EX31_RS05250 at 188.113 kb on - strand, within EX31_RS05250 at 188.113 kb on - strand, within EX31_RS05250 at 188.146 kb on + strand, within EX31_RS05250 at 188.146 kb on + strand, within EX31_RS05250 at 188.146 kb on + strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.147 kb on - strand, within EX31_RS05250 at 188.148 kb on + strand, within EX31_RS05250 at 188.149 kb on - strand, within EX31_RS05250 at 188.206 kb on + strand, within EX31_RS05250 at 188.207 kb on - strand, within EX31_RS05250 at 188.208 kb on + strand, within EX31_RS05250 at 188.208 kb on + strand, within EX31_RS05250 at 188.208 kb on + strand, within EX31_RS05250 at 188.209 kb on - strand, within EX31_RS05250 at 188.209 kb on - strand, within EX31_RS05250 at 188.254 kb on - strand, within EX31_RS05250 at 188.254 kb on - strand, within EX31_RS05250 at 188.328 kb on + strand, within EX31_RS05250 at 188.328 kb on + strand, within EX31_RS05250 at 188.329 kb on - strand, within EX31_RS05250 at 188.359 kb on + strand, within EX31_RS05250 at 188.359 kb on + strand, within EX31_RS05250 at 188.361 kb on + strand, within EX31_RS05250 at 188.362 kb on - strand, within EX31_RS05250 at 188.403 kb on + strand, within EX31_RS05250 at 188.404 kb on - strand, within EX31_RS05250 at 188.404 kb on - strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.458 kb on + strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.459 kb on - strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.554 kb on + strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.555 kb on - strand, within EX31_RS05250 at 188.563 kb on + strand, within EX31_RS05250 at 188.563 kb on + strand, within EX31_RS05250 at 188.563 kb on + strand, within EX31_RS05250 at 188.603 kb on - strand, within EX31_RS05250 at 188.603 kb on - strand, within EX31_RS05250 at 188.757 kb on + strand, within EX31_RS05250 at 188.757 kb on + strand, within EX31_RS05250 at 188.781 kb on + strand, within EX31_RS05250 at 188.782 kb on - strand, within EX31_RS05250 at 188.782 kb on - strand, within EX31_RS05250 at 188.782 kb on - strand, within EX31_RS05250 at 188.782 kb on - strand, within EX31_RS05250 at 188.782 kb on - strand, within EX31_RS05250 at 188.782 kb on - strand, within EX31_RS05250 at 188.820 kb on - strand, within EX31_RS05250 at 188.929 kb on - strand, within EX31_RS05250 at 188.929 kb on - strand, within EX31_RS05250 at 188.929 kb on - strand, within EX31_RS05250 at 189.036 kb on + strand at 189.055 kb on + strand at 189.056 kb on - strand at 189.078 kb on - strand at 189.264 kb on + strand, within EX31_RS05255 at 189.264 kb on + strand, within EX31_RS05255 at 189.265 kb on - strand, within EX31_RS05255 at 189.356 kb on + strand at 189.356 kb on + strand at 189.356 kb on + strand at 189.356 kb on + strand at 189.356 kb on + strand at 189.356 kb on + strand at 189.356 kb on + strand at 189.356 kb on + strand at 189.357 kb on - strand at 189.357 kb on - strand at 189.357 kb on - strand at 189.357 kb on - strand at 189.357 kb on - strand at 189.390 kb on + strand at 189.391 kb on - strand at 189.391 kb on - strand at 189.449 kb on + strand at 189.450 kb on - strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.499 kb on + strand at 189.499 kb on + strand at 189.499 kb on + strand at 189.499 kb on + strand at 189.499 kb on + strand at 189.500 kb on - strand at 189.500 kb on - strand at 189.500 kb on - strand at 189.500 kb on - strand at 189.500 kb on - strand at 189.502 kb on + strand at 189.503 kb on - strand at 189.503 kb on - strand at 189.604 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.624 kb on + strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.625 kb on - strand, within EX31_RS05260 at 189.721 kb on + strand at 189.721 kb on + strand at 189.721 kb on + strand at 189.722 kb on - strand at 189.722 kb on - strand at 189.745 kb on - strand at 189.757 kb on - strand at 189.765 kb on - strand at 189.834 kb on + strand, within EX31_RS05265 at 189.835 kb on - strand, within EX31_RS05265 at 189.864 kb on + strand, within EX31_RS05265 at 189.864 kb on + strand, within EX31_RS05265 at 189.865 kb on - strand, within EX31_RS05265 at 189.865 kb on - strand, within EX31_RS05265 at 189.865 kb on - strand, within EX31_RS05265 at 189.877 kb on - strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.891 kb on + strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.892 kb on - strand, within EX31_RS05265 at 189.957 kb on - strand, within EX31_RS05265 at 189.957 kb on - strand, within EX31_RS05265 at 190.015 kb on - strand, within EX31_RS05265 at 190.096 kb on - strand, within EX31_RS05265 at 190.096 kb on - strand, within EX31_RS05265 at 190.170 kb on + strand, within EX31_RS05265 at 190.171 kb on - strand, within EX31_RS05265 at 190.171 kb on - strand, within EX31_RS05265 at 190.171 kb on - strand, within EX31_RS05265 at 190.200 kb on + strand, within EX31_RS05265 at 190.201 kb on - strand, within EX31_RS05265 at 190.201 kb on - strand, within EX31_RS05265 at 190.252 kb on + strand at 190.252 kb on + strand at 190.252 kb on + strand at 190.253 kb on - strand at 190.279 kb on + strand at 190.284 kb on + strand at 190.284 kb on + strand at 190.285 kb on - strand at 190.297 kb on + strand at 190.297 kb on + strand at 190.298 kb on - strand at 190.298 kb on - strand at 190.329 kb on + strand at 190.330 kb on - strand at 190.341 kb on + strand at 190.352 kb on + strand at 190.353 kb on - strand at 190.353 kb on - strand at 190.353 kb on - strand at 190.358 kb on + strand at 190.358 kb on + strand at 190.359 kb on - strand at 190.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 188,088 - EX31_RS05250 0.23 -0.4 188,113 - EX31_RS05250 0.25 +0.2 188,113 - EX31_RS05250 0.25 -0.3 188,146 + EX31_RS05250 0.28 -0.4 188,146 + EX31_RS05250 0.28 +0.7 188,146 + EX31_RS05250 0.28 -0.6 188,147 - EX31_RS05250 0.28 -0.2 188,147 - EX31_RS05250 0.28 -1.1 188,147 - EX31_RS05250 0.28 +0.1 188,147 - EX31_RS05250 0.28 +0.6 188,148 + EX31_RS05250 0.28 -0.2 188,149 - EX31_RS05250 0.28 +0.4 188,206 + EX31_RS05250 0.33 +0.4 188,207 - EX31_RS05250 0.33 -0.3 188,208 + EX31_RS05250 0.33 +0.8 188,208 + EX31_RS05250 0.33 -0.2 188,208 + EX31_RS05250 0.33 -0.2 188,209 - EX31_RS05250 0.33 +0.3 188,209 - EX31_RS05250 0.33 -0.4 188,254 - EX31_RS05250 0.36 -0.7 188,254 - EX31_RS05250 0.36 -0.6 188,328 + EX31_RS05250 0.42 -0.3 188,328 + EX31_RS05250 0.42 -0.6 188,329 - EX31_RS05250 0.42 -0.2 188,359 + EX31_RS05250 0.45 -0.5 188,359 + EX31_RS05250 0.45 +0.2 188,361 + EX31_RS05250 0.45 +0.4 188,362 - EX31_RS05250 0.45 -0.4 188,403 + EX31_RS05250 0.48 -0.1 188,404 - EX31_RS05250 0.48 +0.3 188,404 - EX31_RS05250 0.48 +0.2 188,458 + EX31_RS05250 0.53 +1.2 188,458 + EX31_RS05250 0.53 -0.0 188,458 + EX31_RS05250 0.53 -0.7 188,458 + EX31_RS05250 0.53 +0.8 188,458 + EX31_RS05250 0.53 +0.1 188,458 + EX31_RS05250 0.53 -0.3 188,458 + EX31_RS05250 0.53 +0.6 188,458 + EX31_RS05250 0.53 -0.4 188,459 - EX31_RS05250 0.53 -0.7 188,459 - EX31_RS05250 0.53 -0.5 188,459 - EX31_RS05250 0.53 -1.6 188,459 - EX31_RS05250 0.53 -0.3 188,459 - EX31_RS05250 0.53 -0.0 188,459 - EX31_RS05250 0.53 +0.7 188,459 - EX31_RS05250 0.53 -0.2 188,459 - EX31_RS05250 0.53 -0.9 188,459 - EX31_RS05250 0.53 +0.5 188,459 - EX31_RS05250 0.53 -0.1 188,459 - EX31_RS05250 0.53 +0.6 188,459 - EX31_RS05250 0.53 -0.0 188,554 + EX31_RS05250 0.60 +0.9 188,554 + EX31_RS05250 0.60 +0.9 188,554 + EX31_RS05250 0.60 -0.1 188,554 + EX31_RS05250 0.60 +0.2 188,554 + EX31_RS05250 0.60 -0.1 188,554 + EX31_RS05250 0.60 -0.1 188,555 - EX31_RS05250 0.60 +0.2 188,555 - EX31_RS05250 0.60 -0.4 188,555 - EX31_RS05250 0.60 +0.9 188,555 - EX31_RS05250 0.60 -0.1 188,555 - EX31_RS05250 0.60 -0.0 188,555 - EX31_RS05250 0.60 +1.6 188,555 - EX31_RS05250 0.60 -0.3 188,555 - EX31_RS05250 0.60 +1.9 188,555 - EX31_RS05250 0.60 -0.4 188,555 - EX31_RS05250 0.60 -0.5 188,563 + EX31_RS05250 0.61 -0.3 188,563 + EX31_RS05250 0.61 -1.2 188,563 + EX31_RS05250 0.61 +0.2 188,603 - EX31_RS05250 0.64 +0.3 188,603 - EX31_RS05250 0.64 +0.0 188,757 + EX31_RS05250 0.76 -1.3 188,757 + EX31_RS05250 0.76 -0.6 188,781 + EX31_RS05250 0.78 +0.3 188,782 - EX31_RS05250 0.78 -0.3 188,782 - EX31_RS05250 0.78 +0.3 188,782 - EX31_RS05250 0.78 +1.2 188,782 - EX31_RS05250 0.78 +0.4 188,782 - EX31_RS05250 0.78 -0.6 188,782 - EX31_RS05250 0.78 +0.3 188,820 - EX31_RS05250 0.81 -0.2 188,929 - EX31_RS05250 0.90 +0.4 188,929 - EX31_RS05250 0.90 +0.6 188,929 - EX31_RS05250 0.90 -0.4 189,036 + +0.2 189,055 + -1.0 189,056 - +0.0 189,078 - +0.5 189,264 + EX31_RS05255 0.61 +0.2 189,264 + EX31_RS05255 0.61 -1.3 189,265 - EX31_RS05255 0.61 -0.8 189,356 + -0.5 189,356 + -0.8 189,356 + -0.8 189,356 + +0.1 189,356 + -1.2 189,356 + -0.4 189,356 + -0.4 189,356 + +0.1 189,357 - -0.1 189,357 - -0.3 189,357 - +0.4 189,357 - -0.3 189,357 - +0.3 189,390 + +0.3 189,391 - +0.2 189,391 - +0.1 189,449 + +0.4 189,450 - -0.1 189,453 + +0.8 189,453 + +0.7 189,453 + -1.5 189,453 + +0.5 189,453 + -0.7 189,453 + -0.5 189,453 + -0.9 189,453 + +0.5 189,453 + +0.2 189,454 - +0.7 189,454 - +0.5 189,454 - +1.0 189,454 - -1.3 189,454 - +0.7 189,499 + +0.0 189,499 + +1.3 189,499 + -0.3 189,499 + +0.4 189,499 + -1.0 189,500 - +0.2 189,500 - -0.6 189,500 - -0.5 189,500 - -0.0 189,500 - +0.1 189,502 + -0.3 189,503 - -0.4 189,503 - -0.7 189,604 + EX31_RS05260 0.55 -0.1 189,624 + EX31_RS05260 0.66 +0.1 189,624 + EX31_RS05260 0.66 +0.2 189,624 + EX31_RS05260 0.66 -0.0 189,624 + EX31_RS05260 0.66 +0.1 189,624 + EX31_RS05260 0.66 +0.1 189,624 + EX31_RS05260 0.66 +0.8 189,624 + EX31_RS05260 0.66 -1.1 189,624 + EX31_RS05260 0.66 +0.3 189,624 + EX31_RS05260 0.66 +0.1 189,625 - EX31_RS05260 0.67 -0.9 189,625 - EX31_RS05260 0.67 -0.9 189,625 - EX31_RS05260 0.67 +0.7 189,625 - EX31_RS05260 0.67 +1.5 189,625 - EX31_RS05260 0.67 -0.2 189,625 - EX31_RS05260 0.67 +0.2 189,625 - EX31_RS05260 0.67 +0.0 189,625 - EX31_RS05260 0.67 +0.3 189,721 + -0.3 189,721 + +0.1 189,721 + +0.3 189,722 - +0.5 189,722 - +0.3 189,745 - -0.2 189,757 - -0.3 189,765 - -0.8 189,834 + EX31_RS05265 0.15 -0.5 189,835 - EX31_RS05265 0.15 -0.0 189,864 + EX31_RS05265 0.20 -0.1 189,864 + EX31_RS05265 0.20 -1.1 189,865 - EX31_RS05265 0.20 +0.7 189,865 - EX31_RS05265 0.20 +0.1 189,865 - EX31_RS05265 0.20 +0.3 189,877 - EX31_RS05265 0.22 -0.1 189,891 + EX31_RS05265 0.25 -0.2 189,891 + EX31_RS05265 0.25 +0.5 189,891 + EX31_RS05265 0.25 -1.4 189,891 + EX31_RS05265 0.25 +0.0 189,891 + EX31_RS05265 0.25 +0.0 189,891 + EX31_RS05265 0.25 -0.4 189,891 + EX31_RS05265 0.25 +0.5 189,891 + EX31_RS05265 0.25 +0.1 189,891 + EX31_RS05265 0.25 +0.7 189,891 + EX31_RS05265 0.25 -0.1 189,891 + EX31_RS05265 0.25 -0.3 189,891 + EX31_RS05265 0.25 +0.4 189,891 + EX31_RS05265 0.25 -2.0 189,892 - EX31_RS05265 0.25 -0.1 189,892 - EX31_RS05265 0.25 +1.3 189,892 - EX31_RS05265 0.25 +0.2 189,892 - EX31_RS05265 0.25 -0.0 189,892 - EX31_RS05265 0.25 +1.3 189,892 - EX31_RS05265 0.25 +0.3 189,892 - EX31_RS05265 0.25 -0.6 189,892 - EX31_RS05265 0.25 -0.2 189,892 - EX31_RS05265 0.25 +1.3 189,892 - EX31_RS05265 0.25 +0.1 189,892 - EX31_RS05265 0.25 +1.0 189,892 - EX31_RS05265 0.25 -0.2 189,892 - EX31_RS05265 0.25 +0.2 189,892 - EX31_RS05265 0.25 +1.2 189,892 - EX31_RS05265 0.25 +0.0 189,892 - EX31_RS05265 0.25 -1.1 189,892 - EX31_RS05265 0.25 +0.2 189,957 - EX31_RS05265 0.37 +0.0 189,957 - EX31_RS05265 0.37 -0.0 190,015 - EX31_RS05265 0.48 -0.7 190,096 - EX31_RS05265 0.63 -0.1 190,096 - EX31_RS05265 0.63 +1.2 190,170 + EX31_RS05265 0.76 -0.7 190,171 - EX31_RS05265 0.77 +0.1 190,171 - EX31_RS05265 0.77 -0.1 190,171 - EX31_RS05265 0.77 -0.6 190,200 + EX31_RS05265 0.82 -0.5 190,201 - EX31_RS05265 0.82 +0.3 190,201 - EX31_RS05265 0.82 +0.8 190,252 + -0.5 190,252 + +0.3 190,252 + +0.5 190,253 - +0.2 190,279 + +0.4 190,284 + +0.5 190,284 + -0.3 190,285 - +1.1 190,297 + +0.2 190,297 + +0.6 190,298 - +0.7 190,298 - +0.1 190,329 + +0.0 190,330 - -0.9 190,341 + -0.8 190,352 + -0.7 190,353 - -0.0 190,353 - -0.2 190,353 - -0.4 190,358 + -0.6 190,358 + +0.2 190,359 - +0.9 190,359 - +1.1
Or see this region's nucleotide sequence