Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03895 and EX31_RS03900 are separated by 99 nucleotides EX31_RS03900 and EX31_RS03905 are separated by 319 nucleotides EX31_RS03905 and EX31_RS03910 are separated by 60 nucleotides
EX31_RS03895: EX31_RS03895 - molecular chaperone DnaJ, at 293,045 to 294,178
_RS03895
EX31_RS03900: EX31_RS03900 - molecular chaperone DnaK, at 294,278 to 296,179
_RS03900
EX31_RS03905: EX31_RS03905 - acetate uptake transporter, at 296,499 to 297,098
_RS03905
EX31_RS03910: EX31_RS03910 - MFS transporter, at 297,159 to 298,481
_RS03910
Position (kb) 294
295
296
297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.486 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 294.599 kb on - strand, within EX31_RS03900 at 296.205 kb on - strand at 296.221 kb on - strand at 296.221 kb on - strand at 296.221 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.226 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.228 kb on - strand at 296.263 kb on + strand at 296.282 kb on - strand at 296.300 kb on + strand at 296.300 kb on + strand at 296.301 kb on - strand at 296.301 kb on - strand at 296.301 kb on - strand at 296.301 kb on - strand at 296.397 kb on + strand at 296.397 kb on + strand at 296.397 kb on + strand at 296.397 kb on + strand at 296.398 kb on - strand at 296.398 kb on - strand at 296.398 kb on - strand at 296.398 kb on - strand at 296.415 kb on + strand at 296.415 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.421 kb on + strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.422 kb on - strand at 296.434 kb on + strand at 296.435 kb on - strand at 296.472 kb on + strand at 296.472 kb on + strand at 296.472 kb on + strand at 296.473 kb on - strand at 296.473 kb on - strand at 296.476 kb on - strand at 296.478 kb on + strand at 296.478 kb on + strand at 296.478 kb on + strand at 296.478 kb on + strand at 296.478 kb on + strand at 296.479 kb on - strand at 296.479 kb on - strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.498 kb on + strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.499 kb on - strand at 296.553 kb on - strand at 296.561 kb on + strand, within EX31_RS03905 at 296.562 kb on - strand, within EX31_RS03905 at 296.562 kb on - strand, within EX31_RS03905 at 296.562 kb on - strand, within EX31_RS03905 at 296.576 kb on - strand, within EX31_RS03905 at 296.619 kb on - strand, within EX31_RS03905 at 296.632 kb on - strand, within EX31_RS03905 at 296.672 kb on + strand, within EX31_RS03905 at 296.684 kb on + strand, within EX31_RS03905 at 296.684 kb on + strand, within EX31_RS03905 at 296.685 kb on - strand, within EX31_RS03905 at 296.802 kb on + strand, within EX31_RS03905 at 296.802 kb on + strand, within EX31_RS03905 at 296.802 kb on + strand, within EX31_RS03905 at 296.802 kb on + strand, within EX31_RS03905 at 296.803 kb on - strand, within EX31_RS03905 at 296.803 kb on - strand, within EX31_RS03905 at 296.803 kb on - strand, within EX31_RS03905 at 296.830 kb on + strand, within EX31_RS03905 at 296.830 kb on + strand, within EX31_RS03905 at 296.830 kb on + strand, within EX31_RS03905 at 296.870 kb on - strand, within EX31_RS03905 at 296.870 kb on - strand, within EX31_RS03905 at 296.870 kb on - strand, within EX31_RS03905 at 296.895 kb on - strand, within EX31_RS03905 at 296.921 kb on + strand, within EX31_RS03905 at 296.924 kb on + strand, within EX31_RS03905 at 296.924 kb on + strand, within EX31_RS03905 at 296.924 kb on + strand, within EX31_RS03905 at 296.924 kb on + strand, within EX31_RS03905 at 296.925 kb on - strand, within EX31_RS03905 at 296.925 kb on - strand, within EX31_RS03905 at 296.925 kb on - strand, within EX31_RS03905 at 296.925 kb on - strand, within EX31_RS03905 at 296.994 kb on + strand, within EX31_RS03905 at 297.027 kb on + strand, within EX31_RS03905 at 297.096 kb on + strand at 297.097 kb on - strand at 297.097 kb on - strand at 297.097 kb on - strand at 297.097 kb on - strand at 297.116 kb on + strand at 297.116 kb on + strand at 297.144 kb on + strand at 297.144 kb on + strand at 297.150 kb on + strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 294,486 - EX31_RS03900 0.11 +2.6 294,599 - EX31_RS03900 0.17 -0.8 294,599 - EX31_RS03900 0.17 -1.2 294,599 - EX31_RS03900 0.17 -0.6 294,599 - EX31_RS03900 0.17 -2.5 294,599 - EX31_RS03900 0.17 +0.3 296,205 - +1.0 296,221 - +1.0 296,221 - -0.3 296,221 - -0.4 296,226 - +0.3 296,226 - +0.4 296,226 - -0.1 296,226 - +0.0 296,226 - -0.2 296,226 - +0.1 296,226 - -1.3 296,226 - -0.7 296,226 - -0.7 296,226 - +0.7 296,226 - -0.4 296,226 - +1.0 296,226 - -1.0 296,226 - +0.1 296,226 - +0.2 296,226 - -0.5 296,226 - +0.1 296,226 - +0.5 296,226 - +0.7 296,226 - +0.1 296,226 - +0.8 296,226 - +0.3 296,226 - -1.4 296,226 - -0.4 296,226 - +0.0 296,226 - -0.0 296,226 - -1.3 296,226 - -0.2 296,226 - -1.0 296,226 - -0.3 296,228 - -0.1 296,228 - +0.1 296,228 - -0.3 296,228 - +0.4 296,228 - -1.4 296,228 - -0.1 296,228 - +0.5 296,228 - +0.1 296,228 - -0.4 296,228 - -0.0 296,228 - -0.0 296,228 - -0.1 296,228 - -0.1 296,228 - -0.1 296,228 - -1.3 296,228 - +0.0 296,228 - +0.6 296,228 - -0.3 296,228 - +1.2 296,228 - -0.0 296,228 - -0.2 296,228 - -0.7 296,228 - +1.0 296,228 - +0.1 296,228 - -0.7 296,228 - -0.8 296,228 - -0.5 296,228 - +0.4 296,228 - +1.0 296,228 - -0.5 296,263 + -0.5 296,282 - -0.5 296,300 + +1.4 296,300 + +0.6 296,301 - +0.3 296,301 - -0.7 296,301 - -0.4 296,301 - +0.3 296,397 + -1.1 296,397 + -0.3 296,397 + -0.8 296,397 + +0.4 296,398 - -0.5 296,398 - +0.0 296,398 - -0.4 296,398 - +0.1 296,415 + -0.1 296,415 + -0.2 296,421 + +0.4 296,421 + +0.4 296,421 + +1.1 296,421 + -0.3 296,421 + +0.5 296,421 + -0.4 296,421 + -0.8 296,421 + -0.4 296,421 + +0.5 296,421 + -0.8 296,421 + +0.0 296,421 + -1.5 296,421 + +0.1 296,422 - -0.1 296,422 - +0.3 296,422 - -0.8 296,422 - -0.0 296,422 - -1.2 296,422 - +0.8 296,422 - -1.0 296,422 - -0.5 296,422 - -0.3 296,434 + -0.2 296,435 - -0.1 296,472 + +0.3 296,472 + +0.6 296,472 + -0.1 296,473 - +0.1 296,473 - +0.1 296,476 - +0.0 296,478 + -0.3 296,478 + +0.2 296,478 + +0.4 296,478 + +0.4 296,478 + -0.1 296,479 - -1.2 296,479 - -0.4 296,498 + -0.3 296,498 + -0.5 296,498 + +0.4 296,498 + -0.0 296,498 + +1.0 296,498 + -0.7 296,498 + -0.4 296,498 + -1.7 296,498 + -0.1 296,498 + +0.7 296,498 + +0.3 296,498 + +0.7 296,498 + +0.3 296,498 + -0.6 296,499 - +0.2 296,499 - -0.2 296,499 - -0.5 296,499 - -0.8 296,499 - +0.5 296,499 - +1.2 296,499 - -0.1 296,499 - +0.1 296,499 - +0.4 296,499 - -0.9 296,553 - -0.2 296,561 + EX31_RS03905 0.10 +0.9 296,562 - EX31_RS03905 0.10 +0.8 296,562 - EX31_RS03905 0.10 +0.4 296,562 - EX31_RS03905 0.10 -0.0 296,576 - EX31_RS03905 0.13 -0.1 296,619 - EX31_RS03905 0.20 +0.2 296,632 - EX31_RS03905 0.22 -0.9 296,672 + EX31_RS03905 0.29 -1.1 296,684 + EX31_RS03905 0.31 +0.5 296,684 + EX31_RS03905 0.31 +1.7 296,685 - EX31_RS03905 0.31 -0.8 296,802 + EX31_RS03905 0.51 -1.5 296,802 + EX31_RS03905 0.51 +0.1 296,802 + EX31_RS03905 0.51 +1.3 296,802 + EX31_RS03905 0.51 -1.3 296,803 - EX31_RS03905 0.51 +0.1 296,803 - EX31_RS03905 0.51 +0.0 296,803 - EX31_RS03905 0.51 -0.7 296,830 + EX31_RS03905 0.55 -1.2 296,830 + EX31_RS03905 0.55 +0.6 296,830 + EX31_RS03905 0.55 -1.1 296,870 - EX31_RS03905 0.62 +1.1 296,870 - EX31_RS03905 0.62 +0.4 296,870 - EX31_RS03905 0.62 +0.2 296,895 - EX31_RS03905 0.66 +0.2 296,921 + EX31_RS03905 0.70 +0.7 296,924 + EX31_RS03905 0.71 +0.0 296,924 + EX31_RS03905 0.71 -0.0 296,924 + EX31_RS03905 0.71 -0.5 296,924 + EX31_RS03905 0.71 -0.1 296,925 - EX31_RS03905 0.71 +0.2 296,925 - EX31_RS03905 0.71 -0.6 296,925 - EX31_RS03905 0.71 +0.5 296,925 - EX31_RS03905 0.71 +1.4 296,994 + EX31_RS03905 0.82 -0.8 297,027 + EX31_RS03905 0.88 +0.1 297,096 + +0.7 297,097 - +0.2 297,097 - +0.1 297,097 - -0.6 297,097 - -1.4 297,116 + -0.5 297,116 + +0.6 297,144 + +0.2 297,144 + +0.6 297,150 + +0.0 297,151 - +0.1 297,151 - +1.4 297,151 - -0.4 297,151 - -0.6
Or see this region's nucleotide sequence