Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03560 and EX31_RS03565 are separated by 80 nucleotides EX31_RS03565 and EX31_RS03570 are separated by 26 nucleotides EX31_RS03570 and EX31_RS03575 are separated by 15 nucleotides
EX31_RS03560: EX31_RS03560 - preprotein translocase subunit SecA, at 205,400 to 208,117
_RS03560
EX31_RS03565: EX31_RS03565 - secA regulator SecM, at 208,198 to 208,725
_RS03565
EX31_RS03570: EX31_RS03570 - DUF721 domain-containing protein, at 208,752 to 209,276
_RS03570
EX31_RS03575: EX31_RS03575 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 209,292 to 210,209
_RS03575
Position (kb)
208
209
210 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 208.173 kb on - strand at 208.475 kb on - strand, within EX31_RS03565 at 208.712 kb on - strand at 209.132 kb on + strand, within EX31_RS03570 at 209.132 kb on + strand, within EX31_RS03570 at 209.132 kb on + strand, within EX31_RS03570 at 209.149 kb on + strand, within EX31_RS03570 at 209.268 kb on - strand at 209.270 kb on + strand at 209.271 kb on - strand at 209.271 kb on - strand at 209.271 kb on - strand at 209.271 kb on - strand at 209.274 kb on + strand at 209.275 kb on - strand at 209.275 kb on - strand at 209.275 kb on - strand at 209.275 kb on - strand at 209.275 kb on - strand at 209.275 kb on - strand at 209.275 kb on - strand at 209.275 kb on - strand at 209.287 kb on - strand at 209.294 kb on - strand at 209.301 kb on + strand at 209.307 kb on - strand at 209.319 kb on - strand at 209.319 kb on - strand at 210.231 kb on - strand at 210.248 kb on - strand at 210.248 kb on - strand at 210.248 kb on - strand at 210.248 kb on - strand at 210.248 kb on - strand at 210.248 kb on - strand at 210.254 kb on - strand at 210.254 kb on - strand at 210.254 kb on - strand at 210.254 kb on - strand at 210.254 kb on - strand at 210.254 kb on - strand at 210.254 kb on - strand at 210.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 208,173 - -0.1 208,475 - EX31_RS03565 0.52 -1.3 208,712 - +0.5 209,132 + EX31_RS03570 0.72 -0.1 209,132 + EX31_RS03570 0.72 +0.0 209,132 + EX31_RS03570 0.72 -1.8 209,149 + EX31_RS03570 0.76 -0.9 209,268 - -0.4 209,270 + +0.0 209,271 - +0.1 209,271 - -0.4 209,271 - +0.3 209,271 - -0.5 209,274 + +2.9 209,275 - +0.4 209,275 - -0.0 209,275 - +0.1 209,275 - +0.4 209,275 - +0.1 209,275 - -0.4 209,275 - +0.8 209,275 - -0.4 209,287 - +0.8 209,294 - -0.0 209,301 + +0.2 209,307 - -0.1 209,319 - +0.4 209,319 - +0.1 210,231 - +0.2 210,248 - -2.1 210,248 - +1.0 210,248 - -0.2 210,248 - +0.0 210,248 - +0.1 210,248 - -0.3 210,254 - -0.2 210,254 - +0.1 210,254 - +0.3 210,254 - +1.0 210,254 - -0.0 210,254 - -1.2 210,254 - -0.2 210,259 - -0.5
Or see this region's nucleotide sequence