Strain Fitness in Rahnella sp. WP5 around EX31_RS03570

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03560 and EX31_RS03565 are separated by 80 nucleotidesEX31_RS03565 and EX31_RS03570 are separated by 26 nucleotidesEX31_RS03570 and EX31_RS03575 are separated by 15 nucleotides EX31_RS03560: EX31_RS03560 - preprotein translocase subunit SecA, at 205,400 to 208,117 _RS03560 EX31_RS03565: EX31_RS03565 - secA regulator SecM, at 208,198 to 208,725 _RS03565 EX31_RS03570: EX31_RS03570 - DUF721 domain-containing protein, at 208,752 to 209,276 _RS03570 EX31_RS03575: EX31_RS03575 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 209,292 to 210,209 _RS03575 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.173 kb on - strandat 208.475 kb on - strand, within EX31_RS03565at 208.712 kb on - strandat 209.132 kb on + strand, within EX31_RS03570at 209.132 kb on + strand, within EX31_RS03570at 209.132 kb on + strand, within EX31_RS03570at 209.149 kb on + strand, within EX31_RS03570at 209.268 kb on - strandat 209.270 kb on + strandat 209.271 kb on - strandat 209.271 kb on - strandat 209.271 kb on - strandat 209.271 kb on - strandat 209.274 kb on + strandat 209.275 kb on - strandat 209.275 kb on - strandat 209.275 kb on - strandat 209.275 kb on - strandat 209.275 kb on - strandat 209.275 kb on - strandat 209.275 kb on - strandat 209.275 kb on - strandat 209.287 kb on - strandat 209.294 kb on - strandat 209.301 kb on + strandat 209.307 kb on - strandat 209.319 kb on - strandat 209.319 kb on - strandat 210.231 kb on - strandat 210.248 kb on - strandat 210.248 kb on - strandat 210.248 kb on - strandat 210.248 kb on - strandat 210.248 kb on - strandat 210.248 kb on - strandat 210.254 kb on - strandat 210.254 kb on - strandat 210.254 kb on - strandat 210.254 kb on - strandat 210.254 kb on - strandat 210.254 kb on - strandat 210.254 kb on - strandat 210.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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208,173 - -0.1
208,475 - EX31_RS03565 0.52 -1.3
208,712 - +0.5
209,132 + EX31_RS03570 0.72 -0.1
209,132 + EX31_RS03570 0.72 +0.0
209,132 + EX31_RS03570 0.72 -1.8
209,149 + EX31_RS03570 0.76 -0.9
209,268 - -0.4
209,270 + +0.0
209,271 - +0.1
209,271 - -0.4
209,271 - +0.3
209,271 - -0.5
209,274 + +2.9
209,275 - +0.4
209,275 - -0.0
209,275 - +0.1
209,275 - +0.4
209,275 - +0.1
209,275 - -0.4
209,275 - +0.8
209,275 - -0.4
209,287 - +0.8
209,294 - -0.0
209,301 + +0.2
209,307 - -0.1
209,319 - +0.4
209,319 - +0.1
210,231 - +0.2
210,248 - -2.1
210,248 - +1.0
210,248 - -0.2
210,248 - +0.0
210,248 - +0.1
210,248 - -0.3
210,254 - -0.2
210,254 - +0.1
210,254 - +0.3
210,254 - +1.0
210,254 - -0.0
210,254 - -1.2
210,254 - -0.2
210,259 - -0.5

Or see this region's nucleotide sequence