Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03210 and EX31_RS03215 overlap by 4 nucleotides EX31_RS03215 and EX31_RS03220 are separated by 1 nucleotides EX31_RS03220 and EX31_RS03225 are separated by 95 nucleotides
EX31_RS03210: EX31_RS03210 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 128,043 to 130,031
_RS03210
EX31_RS03215: EX31_RS03215 - Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD, at 130,028 to 130,930
_RS03215
EX31_RS03220: EX31_RS03220 - Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC, at 130,932 to 131,744
_RS03220
EX31_RS03225: EX31_RS03225 - ferrichrome porin FhuA, at 131,840 to 134,095
_RS03225
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 129.955 kb on + strand at 129.955 kb on + strand at 129.956 kb on - strand at 130.095 kb on + strand at 130.214 kb on + strand, within EX31_RS03215 at 130.229 kb on - strand, within EX31_RS03215 at 130.479 kb on - strand, within EX31_RS03215 at 130.502 kb on - strand, within EX31_RS03215 at 130.502 kb on - strand, within EX31_RS03215 at 130.637 kb on + strand, within EX31_RS03215 at 130.649 kb on - strand, within EX31_RS03215 at 130.728 kb on + strand, within EX31_RS03215 at 130.728 kb on + strand, within EX31_RS03215 at 130.728 kb on + strand, within EX31_RS03215 at 130.729 kb on - strand, within EX31_RS03215 at 130.729 kb on - strand, within EX31_RS03215 at 130.732 kb on + strand, within EX31_RS03215 at 130.733 kb on - strand, within EX31_RS03215 at 130.922 kb on - strand at 130.930 kb on + strand at 130.930 kb on + strand at 130.930 kb on + strand at 130.931 kb on - strand at 130.931 kb on - strand at 130.931 kb on - strand at 130.931 kb on - strand at 130.931 kb on - strand at 130.936 kb on + strand at 130.997 kb on - strand at 131.524 kb on + strand, within EX31_RS03220 at 131.525 kb on - strand, within EX31_RS03220 at 131.568 kb on + strand, within EX31_RS03220 at 131.571 kb on + strand, within EX31_RS03220 at 131.680 kb on - strand at 131.727 kb on + strand at 131.727 kb on + strand at 131.727 kb on + strand at 131.727 kb on + strand at 131.727 kb on + strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.728 kb on - strand at 131.745 kb on - strand at 131.809 kb on + strand at 131.810 kb on - strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.816 kb on + strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.817 kb on - strand at 131.820 kb on + strand at 131.820 kb on + strand at 131.820 kb on + strand at 131.821 kb on - strand at 131.821 kb on - strand at 131.821 kb on - strand at 131.821 kb on - strand at 131.821 kb on - strand at 131.821 kb on - strand at 131.828 kb on - strand at 131.899 kb on - strand at 131.899 kb on - strand at 131.922 kb on + strand at 131.923 kb on - strand at 131.923 kb on - strand at 131.923 kb on - strand at 131.923 kb on - strand at 131.923 kb on - strand at 131.923 kb on - strand at 131.923 kb on - strand at 131.923 kb on - strand at 131.994 kb on + strand at 131.995 kb on - strand at 132.022 kb on - strand at 132.034 kb on + strand at 132.067 kb on - strand, within EX31_RS03225 at 132.067 kb on - strand, within EX31_RS03225 at 132.067 kb on - strand, within EX31_RS03225 at 132.067 kb on - strand, within EX31_RS03225 at 132.067 kb on - strand, within EX31_RS03225 at 132.067 kb on - strand, within EX31_RS03225 at 132.090 kb on + strand, within EX31_RS03225 at 132.091 kb on - strand, within EX31_RS03225 at 132.145 kb on - strand, within EX31_RS03225 at 132.145 kb on - strand, within EX31_RS03225 at 132.202 kb on - strand, within EX31_RS03225 at 132.202 kb on - strand, within EX31_RS03225 at 132.233 kb on - strand, within EX31_RS03225 at 132.235 kb on - strand, within EX31_RS03225 at 132.235 kb on - strand, within EX31_RS03225 at 132.235 kb on - strand, within EX31_RS03225 at 132.235 kb on - strand, within EX31_RS03225 at 132.235 kb on - strand, within EX31_RS03225 at 132.235 kb on - strand, within EX31_RS03225 at 132.235 kb on - strand, within EX31_RS03225 at 132.334 kb on + strand, within EX31_RS03225 at 132.334 kb on + strand, within EX31_RS03225 at 132.335 kb on - strand, within EX31_RS03225 at 132.335 kb on - strand, within EX31_RS03225 at 132.388 kb on - strand, within EX31_RS03225 at 132.388 kb on - strand, within EX31_RS03225 at 132.388 kb on - strand, within EX31_RS03225 at 132.388 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.390 kb on - strand, within EX31_RS03225 at 132.430 kb on - strand, within EX31_RS03225 at 132.430 kb on - strand, within EX31_RS03225 at 132.430 kb on - strand, within EX31_RS03225 at 132.430 kb on - strand, within EX31_RS03225 at 132.430 kb on - strand, within EX31_RS03225 at 132.430 kb on - strand, within EX31_RS03225 at 132.448 kb on - strand, within EX31_RS03225 at 132.523 kb on - strand, within EX31_RS03225 at 132.531 kb on + strand, within EX31_RS03225 at 132.596 kb on - strand, within EX31_RS03225 at 132.596 kb on - strand, within EX31_RS03225 at 132.605 kb on - strand, within EX31_RS03225 at 132.706 kb on - strand, within EX31_RS03225
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 129,955 + +0.3 129,955 + +1.1 129,956 - -1.0 130,095 + +0.2 130,214 + EX31_RS03215 0.21 +0.0 130,229 - EX31_RS03215 0.22 +1.7 130,479 - EX31_RS03215 0.50 +0.4 130,502 - EX31_RS03215 0.52 +1.5 130,502 - EX31_RS03215 0.52 +0.3 130,637 + EX31_RS03215 0.67 +1.3 130,649 - EX31_RS03215 0.69 +1.2 130,728 + EX31_RS03215 0.78 +0.1 130,728 + EX31_RS03215 0.78 +1.1 130,728 + EX31_RS03215 0.78 -1.1 130,729 - EX31_RS03215 0.78 +0.2 130,729 - EX31_RS03215 0.78 +1.4 130,732 + EX31_RS03215 0.78 +0.6 130,733 - EX31_RS03215 0.78 +0.3 130,922 - +0.1 130,930 + +1.1 130,930 + +0.4 130,930 + +1.1 130,931 - +1.2 130,931 - -1.0 130,931 - +0.8 130,931 - -0.2 130,931 - -0.3 130,936 + -1.4 130,997 - -1.1 131,524 + EX31_RS03220 0.73 -0.7 131,525 - EX31_RS03220 0.73 +1.3 131,568 + EX31_RS03220 0.78 -2.3 131,571 + EX31_RS03220 0.79 -0.9 131,680 - +1.1 131,727 + -1.2 131,727 + -0.7 131,727 + +0.5 131,727 + +0.7 131,727 + +0.9 131,728 - +0.5 131,728 - +0.4 131,728 - +1.3 131,728 - +1.4 131,728 - +0.2 131,728 - -0.2 131,728 - -0.3 131,728 - +0.1 131,728 - -1.4 131,728 - -0.5 131,728 - -1.4 131,728 - -0.4 131,728 - +1.6 131,728 - -0.6 131,745 - -0.2 131,809 + +1.4 131,810 - +0.6 131,816 + -0.5 131,816 + -2.3 131,816 + -0.4 131,816 + +0.6 131,816 + -0.7 131,816 + -1.0 131,816 + -0.0 131,816 + -1.7 131,816 + -0.6 131,816 + +0.1 131,817 - -0.2 131,817 - -1.7 131,817 - -1.0 131,817 - -0.2 131,817 - +0.1 131,817 - +1.0 131,817 - +0.2 131,817 - -0.1 131,817 - +0.0 131,817 - -0.4 131,817 - -0.1 131,817 - -0.8 131,817 - -0.5 131,817 - -0.4 131,817 - -0.4 131,817 - -0.4 131,817 - +0.5 131,817 - +2.0 131,817 - -0.1 131,817 - -0.5 131,817 - +0.3 131,817 - +0.4 131,817 - +0.0 131,817 - -0.2 131,817 - -0.0 131,820 + +0.2 131,820 + +1.9 131,820 + +0.5 131,821 - -0.2 131,821 - -0.8 131,821 - -0.2 131,821 - -0.3 131,821 - -0.8 131,821 - -0.1 131,828 - -0.8 131,899 - +0.7 131,899 - +0.4 131,922 + -0.2 131,923 - -0.6 131,923 - +0.5 131,923 - -0.9 131,923 - +0.5 131,923 - -0.2 131,923 - -0.1 131,923 - +0.8 131,923 - +1.1 131,994 + +1.3 131,995 - +0.4 132,022 - +0.4 132,034 + +0.1 132,067 - EX31_RS03225 0.10 -0.9 132,067 - EX31_RS03225 0.10 -0.1 132,067 - EX31_RS03225 0.10 +0.3 132,067 - EX31_RS03225 0.10 -0.2 132,067 - EX31_RS03225 0.10 -0.2 132,067 - EX31_RS03225 0.10 +0.9 132,090 + EX31_RS03225 0.11 +0.8 132,091 - EX31_RS03225 0.11 +0.7 132,145 - EX31_RS03225 0.14 -0.6 132,145 - EX31_RS03225 0.14 +0.4 132,202 - EX31_RS03225 0.16 +1.0 132,202 - EX31_RS03225 0.16 -0.3 132,233 - EX31_RS03225 0.17 -0.2 132,235 - EX31_RS03225 0.18 +0.1 132,235 - EX31_RS03225 0.18 +0.7 132,235 - EX31_RS03225 0.18 -0.0 132,235 - EX31_RS03225 0.18 +0.1 132,235 - EX31_RS03225 0.18 -1.0 132,235 - EX31_RS03225 0.18 +0.5 132,235 - EX31_RS03225 0.18 +0.5 132,334 + EX31_RS03225 0.22 -0.8 132,334 + EX31_RS03225 0.22 +0.0 132,335 - EX31_RS03225 0.22 +0.4 132,335 - EX31_RS03225 0.22 +0.6 132,388 - EX31_RS03225 0.24 +0.1 132,388 - EX31_RS03225 0.24 +0.2 132,388 - EX31_RS03225 0.24 +0.2 132,388 - EX31_RS03225 0.24 +0.3 132,390 - EX31_RS03225 0.24 -0.1 132,390 - EX31_RS03225 0.24 +0.4 132,390 - EX31_RS03225 0.24 -0.9 132,390 - EX31_RS03225 0.24 +0.8 132,390 - EX31_RS03225 0.24 -0.1 132,390 - EX31_RS03225 0.24 +0.5 132,390 - EX31_RS03225 0.24 +0.4 132,390 - EX31_RS03225 0.24 +0.3 132,390 - EX31_RS03225 0.24 -0.3 132,390 - EX31_RS03225 0.24 +0.1 132,390 - EX31_RS03225 0.24 -0.2 132,430 - EX31_RS03225 0.26 -0.4 132,430 - EX31_RS03225 0.26 -0.3 132,430 - EX31_RS03225 0.26 -0.4 132,430 - EX31_RS03225 0.26 -0.8 132,430 - EX31_RS03225 0.26 -0.7 132,430 - EX31_RS03225 0.26 -0.5 132,448 - EX31_RS03225 0.27 +0.3 132,523 - EX31_RS03225 0.30 +2.9 132,531 + EX31_RS03225 0.31 +0.8 132,596 - EX31_RS03225 0.34 -0.9 132,596 - EX31_RS03225 0.34 -0.1 132,605 - EX31_RS03225 0.34 -1.0 132,706 - EX31_RS03225 0.38 -0.6
Or see this region's nucleotide sequence