Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03075 and EX31_RS03080 are separated by 142 nucleotides EX31_RS03080 and EX31_RS03085 are separated by 22 nucleotides EX31_RS03085 and EX31_RS03090 are separated by 447 nucleotides
EX31_RS03075: EX31_RS03075 - LysR family transcriptional regulator, at 97,389 to 98,330
_RS03075
EX31_RS03080: EX31_RS03080 - glycoside hydrolase family 108 protein, at 98,473 to 99,015
_RS03080
EX31_RS03085: EX31_RS03085 - hypothetical protein, at 99,038 to 99,484
_RS03085
EX31_RS03090: EX31_RS03090 - chitinase, at 99,932 to 102,073
_RS03090
Position (kb) 99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.070 kb on + strand, within EX31_RS03075 at 98.070 kb on + strand, within EX31_RS03075 at 98.085 kb on - strand, within EX31_RS03075 at 98.195 kb on + strand, within EX31_RS03075 at 98.195 kb on + strand, within EX31_RS03075 at 98.196 kb on - strand, within EX31_RS03075 at 98.211 kb on + strand, within EX31_RS03075 at 98.284 kb on - strand at 98.335 kb on + strand at 98.420 kb on + strand at 98.445 kb on - strand at 98.527 kb on - strand at 98.550 kb on - strand, within EX31_RS03080 at 98.571 kb on + strand, within EX31_RS03080 at 98.571 kb on + strand, within EX31_RS03080 at 98.571 kb on + strand, within EX31_RS03080 at 98.572 kb on - strand, within EX31_RS03080 at 98.574 kb on + strand, within EX31_RS03080 at 98.574 kb on + strand, within EX31_RS03080 at 98.575 kb on - strand, within EX31_RS03080 at 98.575 kb on - strand, within EX31_RS03080 at 98.575 kb on - strand, within EX31_RS03080 at 98.681 kb on + strand, within EX31_RS03080 at 98.681 kb on + strand, within EX31_RS03080 at 98.684 kb on + strand, within EX31_RS03080 at 98.684 kb on + strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.685 kb on - strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.700 kb on + strand, within EX31_RS03080 at 98.701 kb on - strand, within EX31_RS03080 at 98.701 kb on - strand, within EX31_RS03080 at 98.704 kb on + strand, within EX31_RS03080 at 98.704 kb on + strand, within EX31_RS03080 at 98.704 kb on + strand, within EX31_RS03080 at 98.705 kb on - strand, within EX31_RS03080 at 98.825 kb on + strand, within EX31_RS03080 at 98.831 kb on + strand, within EX31_RS03080 at 98.831 kb on + strand, within EX31_RS03080 at 98.831 kb on + strand, within EX31_RS03080 at 98.832 kb on - strand, within EX31_RS03080 at 98.852 kb on + strand, within EX31_RS03080 at 98.852 kb on + strand, within EX31_RS03080 at 98.852 kb on + strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.853 kb on - strand, within EX31_RS03080 at 98.889 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.891 kb on + strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.892 kb on - strand, within EX31_RS03080 at 98.897 kb on + strand, within EX31_RS03080 at 98.897 kb on + strand, within EX31_RS03080 at 98.922 kb on + strand, within EX31_RS03080 at 98.946 kb on + strand, within EX31_RS03080 at 98.962 kb on + strand at 98.962 kb on + strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.963 kb on - strand at 98.966 kb on + strand at 98.967 kb on - strand at 98.995 kb on - strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.015 kb on + strand at 99.016 kb on - strand at 99.016 kb on - strand at 99.016 kb on - strand at 99.016 kb on - strand at 99.080 kb on + strand at 99.108 kb on - strand, within EX31_RS03085 at 99.138 kb on - strand, within EX31_RS03085 at 99.138 kb on - strand, within EX31_RS03085 at 99.173 kb on - strand, within EX31_RS03085 at 99.202 kb on + strand, within EX31_RS03085 at 99.202 kb on + strand, within EX31_RS03085 at 99.203 kb on - strand, within EX31_RS03085 at 99.248 kb on + strand, within EX31_RS03085 at 99.248 kb on + strand, within EX31_RS03085 at 99.253 kb on - strand, within EX31_RS03085 at 99.253 kb on - strand, within EX31_RS03085 at 99.362 kb on - strand, within EX31_RS03085 at 99.471 kb on + strand at 99.472 kb on - strand at 99.474 kb on - strand at 99.474 kb on - strand at 99.586 kb on - strand at 99.591 kb on + strand at 99.640 kb on + strand at 99.641 kb on - strand at 99.743 kb on - strand at 99.770 kb on - strand at 99.905 kb on + strand at 99.983 kb on - strand at 100.030 kb on + strand at 100.031 kb on - strand at 100.031 kb on - strand at 100.058 kb on + strand at 100.058 kb on + strand at 100.059 kb on - strand at 100.061 kb on - strand at 100.100 kb on + strand at 100.103 kb on + strand at 100.103 kb on + strand at 100.121 kb on + strand at 100.121 kb on + strand at 100.121 kb on + strand at 100.122 kb on - strand at 100.122 kb on - strand at 100.122 kb on - strand at 100.206 kb on - strand, within EX31_RS03090 at 100.265 kb on - strand, within EX31_RS03090 at 100.265 kb on - strand, within EX31_RS03090 at 100.295 kb on - strand, within EX31_RS03090 at 100.416 kb on + strand, within EX31_RS03090 at 100.416 kb on + strand, within EX31_RS03090 at 100.416 kb on + strand, within EX31_RS03090 at 100.416 kb on + strand, within EX31_RS03090 at 100.416 kb on + strand, within EX31_RS03090 at 100.417 kb on - strand, within EX31_RS03090 at 100.417 kb on - strand, within EX31_RS03090 at 100.417 kb on - strand, within EX31_RS03090 at 100.437 kb on + strand, within EX31_RS03090 at 100.437 kb on + strand, within EX31_RS03090 at 100.437 kb on + strand, within EX31_RS03090 at 100.437 kb on + strand, within EX31_RS03090 at 100.438 kb on - strand, within EX31_RS03090 at 100.438 kb on - strand, within EX31_RS03090 at 100.438 kb on - strand, within EX31_RS03090 at 100.438 kb on - strand, within EX31_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 98,070 + EX31_RS03075 0.72 -1.6 98,070 + EX31_RS03075 0.72 +0.6 98,085 - EX31_RS03075 0.74 -0.3 98,195 + EX31_RS03075 0.86 -0.4 98,195 + EX31_RS03075 0.86 -0.5 98,196 - EX31_RS03075 0.86 +0.3 98,211 + EX31_RS03075 0.87 +0.5 98,284 - +0.1 98,335 + +0.2 98,420 + +0.7 98,445 - -1.0 98,527 - -0.7 98,550 - EX31_RS03080 0.14 -1.3 98,571 + EX31_RS03080 0.18 +0.4 98,571 + EX31_RS03080 0.18 -0.1 98,571 + EX31_RS03080 0.18 +0.1 98,572 - EX31_RS03080 0.18 -0.5 98,574 + EX31_RS03080 0.19 +2.4 98,574 + EX31_RS03080 0.19 -0.4 98,575 - EX31_RS03080 0.19 +1.6 98,575 - EX31_RS03080 0.19 +0.8 98,575 - EX31_RS03080 0.19 +0.1 98,681 + EX31_RS03080 0.38 -0.3 98,681 + EX31_RS03080 0.38 -1.1 98,684 + EX31_RS03080 0.39 +0.8 98,684 + EX31_RS03080 0.39 -0.5 98,685 - EX31_RS03080 0.39 +1.5 98,685 - EX31_RS03080 0.39 +0.6 98,685 - EX31_RS03080 0.39 -0.1 98,685 - EX31_RS03080 0.39 +0.3 98,685 - EX31_RS03080 0.39 +0.4 98,700 + EX31_RS03080 0.42 -0.2 98,700 + EX31_RS03080 0.42 +1.2 98,700 + EX31_RS03080 0.42 +0.5 98,700 + EX31_RS03080 0.42 +0.2 98,701 - EX31_RS03080 0.42 +1.0 98,701 - EX31_RS03080 0.42 -0.8 98,704 + EX31_RS03080 0.43 -0.8 98,704 + EX31_RS03080 0.43 +0.9 98,704 + EX31_RS03080 0.43 +1.0 98,705 - EX31_RS03080 0.43 +1.9 98,825 + EX31_RS03080 0.65 -0.9 98,831 + EX31_RS03080 0.66 +1.9 98,831 + EX31_RS03080 0.66 +0.3 98,831 + EX31_RS03080 0.66 +0.3 98,832 - EX31_RS03080 0.66 -0.5 98,852 + EX31_RS03080 0.70 -0.1 98,852 + EX31_RS03080 0.70 -1.1 98,852 + EX31_RS03080 0.70 -0.7 98,853 - EX31_RS03080 0.70 -0.5 98,853 - EX31_RS03080 0.70 +1.1 98,853 - EX31_RS03080 0.70 -0.5 98,853 - EX31_RS03080 0.70 -1.1 98,853 - EX31_RS03080 0.70 +0.2 98,853 - EX31_RS03080 0.70 -0.1 98,853 - EX31_RS03080 0.70 +0.6 98,889 + EX31_RS03080 0.77 -0.3 98,891 + EX31_RS03080 0.77 +0.3 98,891 + EX31_RS03080 0.77 -0.9 98,891 + EX31_RS03080 0.77 -0.3 98,891 + EX31_RS03080 0.77 -0.1 98,891 + EX31_RS03080 0.77 +0.6 98,892 - EX31_RS03080 0.77 -0.1 98,892 - EX31_RS03080 0.77 +1.4 98,892 - EX31_RS03080 0.77 -0.2 98,892 - EX31_RS03080 0.77 -0.1 98,892 - EX31_RS03080 0.77 +0.3 98,897 + EX31_RS03080 0.78 +0.0 98,897 + EX31_RS03080 0.78 +0.2 98,922 + EX31_RS03080 0.83 +0.8 98,946 + EX31_RS03080 0.87 +0.4 98,962 + -1.0 98,962 + +0.7 98,963 - -1.0 98,963 - -0.2 98,963 - -0.1 98,963 - +0.9 98,963 - +0.1 98,963 - +0.1 98,963 - -0.4 98,963 - -0.2 98,966 + +0.4 98,967 - +0.1 98,995 - +0.7 99,015 + +0.2 99,015 + +1.5 99,015 + -0.2 99,015 + +0.4 99,016 - -0.1 99,016 - +0.5 99,016 - +0.7 99,016 - -1.4 99,080 + +0.2 99,108 - EX31_RS03085 0.16 -1.3 99,138 - EX31_RS03085 0.22 -0.9 99,138 - EX31_RS03085 0.22 -0.1 99,173 - EX31_RS03085 0.30 -0.8 99,202 + EX31_RS03085 0.37 -0.7 99,202 + EX31_RS03085 0.37 -1.6 99,203 - EX31_RS03085 0.37 -0.5 99,248 + EX31_RS03085 0.47 -0.7 99,248 + EX31_RS03085 0.47 -0.5 99,253 - EX31_RS03085 0.48 -0.2 99,253 - EX31_RS03085 0.48 -0.1 99,362 - EX31_RS03085 0.72 -0.2 99,471 + +0.2 99,472 - -0.9 99,474 - -0.1 99,474 - -0.6 99,586 - -0.3 99,591 + +0.7 99,640 + -0.3 99,641 - +0.3 99,743 - +0.1 99,770 - +0.9 99,905 + +0.3 99,983 - -0.8 100,030 + -0.4 100,031 - +0.8 100,031 - -1.1 100,058 + -0.1 100,058 + -0.3 100,059 - -0.1 100,061 - +0.3 100,100 + -0.1 100,103 + +0.2 100,103 + -2.4 100,121 + +0.1 100,121 + +0.1 100,121 + -0.9 100,122 - +0.1 100,122 - +0.1 100,122 - +0.4 100,206 - EX31_RS03090 0.13 +0.7 100,265 - EX31_RS03090 0.16 +1.7 100,265 - EX31_RS03090 0.16 -0.6 100,295 - EX31_RS03090 0.17 -0.8 100,416 + EX31_RS03090 0.23 +0.2 100,416 + EX31_RS03090 0.23 -0.8 100,416 + EX31_RS03090 0.23 +0.1 100,416 + EX31_RS03090 0.23 +0.2 100,416 + EX31_RS03090 0.23 +0.4 100,417 - EX31_RS03090 0.23 +1.0 100,417 - EX31_RS03090 0.23 -0.4 100,417 - EX31_RS03090 0.23 +0.2 100,437 + EX31_RS03090 0.24 +0.6 100,437 + EX31_RS03090 0.24 -0.1 100,437 + EX31_RS03090 0.24 +1.4 100,437 + EX31_RS03090 0.24 +0.4 100,438 - EX31_RS03090 0.24 +0.6 100,438 - EX31_RS03090 0.24 -0.2 100,438 - EX31_RS03090 0.24 -0.8 100,438 - EX31_RS03090 0.24 -0.2
Or see this region's nucleotide sequence