Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02525 and EX31_RS02530 are separated by 1 nucleotides EX31_RS02530 and EX31_RS02535 are separated by 58 nucleotides
EX31_RS02525: EX31_RS02525 - ABC transporter permease, at 535,190 to 537,619
_RS02525
EX31_RS02530: EX31_RS02530 - ABC transporter ATP-binding protein, at 537,621 to 538,337
_RS02530
EX31_RS02535: EX31_RS02535 - HlyD family efflux transporter periplasmic adaptor subunit, at 538,396 to 539,646
_RS02535
Position (kb) 537
538
539 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 536.646 kb on - strand, within EX31_RS02525 at 536.747 kb on + strand, within EX31_RS02525 at 536.748 kb on - strand, within EX31_RS02525 at 536.748 kb on - strand, within EX31_RS02525 at 536.858 kb on + strand, within EX31_RS02525 at 537.009 kb on + strand, within EX31_RS02525 at 537.028 kb on + strand, within EX31_RS02525 at 537.172 kb on - strand, within EX31_RS02525 at 537.289 kb on + strand, within EX31_RS02525 at 537.291 kb on + strand, within EX31_RS02525 at 537.291 kb on + strand, within EX31_RS02525 at 537.292 kb on - strand, within EX31_RS02525 at 537.292 kb on - strand, within EX31_RS02525 at 537.336 kb on + strand, within EX31_RS02525 at 537.364 kb on + strand, within EX31_RS02525 at 537.365 kb on - strand, within EX31_RS02525 at 537.444 kb on - strand at 537.514 kb on + strand at 537.515 kb on - strand at 537.516 kb on + strand at 537.517 kb on - strand at 537.517 kb on - strand at 537.547 kb on + strand at 537.560 kb on - strand at 537.560 kb on - strand at 537.623 kb on - strand at 537.623 kb on - strand at 537.633 kb on + strand at 537.770 kb on + strand, within EX31_RS02530 at 537.935 kb on + strand, within EX31_RS02530 at 537.935 kb on + strand, within EX31_RS02530 at 537.936 kb on - strand, within EX31_RS02530 at 537.936 kb on - strand, within EX31_RS02530 at 537.990 kb on - strand, within EX31_RS02530 at 537.990 kb on - strand, within EX31_RS02530 at 538.144 kb on + strand, within EX31_RS02530 at 538.145 kb on - strand, within EX31_RS02530 at 538.145 kb on - strand, within EX31_RS02530 at 538.200 kb on - strand, within EX31_RS02530 at 538.324 kb on - strand at 538.365 kb on + strand at 538.398 kb on - strand at 538.398 kb on - strand at 538.398 kb on - strand at 538.402 kb on - strand at 538.492 kb on - strand at 538.492 kb on - strand at 538.492 kb on - strand at 538.494 kb on - strand at 538.494 kb on - strand at 538.494 kb on - strand at 538.494 kb on - strand at 538.611 kb on - strand, within EX31_RS02535 at 538.611 kb on - strand, within EX31_RS02535 at 538.624 kb on - strand, within EX31_RS02535 at 538.643 kb on - strand, within EX31_RS02535 at 538.845 kb on - strand, within EX31_RS02535 at 538.845 kb on - strand, within EX31_RS02535 at 538.845 kb on - strand, within EX31_RS02535 at 538.845 kb on - strand, within EX31_RS02535 at 538.876 kb on - strand, within EX31_RS02535 at 538.948 kb on - strand, within EX31_RS02535 at 538.948 kb on - strand, within EX31_RS02535 at 539.005 kb on - strand, within EX31_RS02535 at 539.104 kb on - strand, within EX31_RS02535 at 539.104 kb on - strand, within EX31_RS02535 at 539.107 kb on - strand, within EX31_RS02535 at 539.151 kb on - strand, within EX31_RS02535 at 539.151 kb on - strand, within EX31_RS02535 at 539.151 kb on - strand, within EX31_RS02535 at 539.210 kb on - strand, within EX31_RS02535 at 539.254 kb on - strand, within EX31_RS02535 at 539.254 kb on - strand, within EX31_RS02535 at 539.329 kb on - strand, within EX31_RS02535
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 536,646 - EX31_RS02525 0.60 -0.2 536,747 + EX31_RS02525 0.64 -0.1 536,748 - EX31_RS02525 0.64 +0.4 536,748 - EX31_RS02525 0.64 -0.8 536,858 + EX31_RS02525 0.69 +0.5 537,009 + EX31_RS02525 0.75 -0.7 537,028 + EX31_RS02525 0.76 +1.3 537,172 - EX31_RS02525 0.82 -1.1 537,289 + EX31_RS02525 0.86 +2.5 537,291 + EX31_RS02525 0.86 +3.2 537,291 + EX31_RS02525 0.86 +0.2 537,292 - EX31_RS02525 0.87 +1.0 537,292 - EX31_RS02525 0.87 -0.4 537,336 + EX31_RS02525 0.88 -0.7 537,364 + EX31_RS02525 0.89 +2.5 537,365 - EX31_RS02525 0.90 +0.9 537,444 - -0.2 537,514 + +0.9 537,515 - +0.7 537,516 + +0.7 537,517 - +1.7 537,517 - -0.1 537,547 + +0.5 537,560 - +0.1 537,560 - +0.2 537,623 - +1.3 537,623 - +1.0 537,633 + +1.0 537,770 + EX31_RS02530 0.21 +0.5 537,935 + EX31_RS02530 0.44 -0.1 537,935 + EX31_RS02530 0.44 +1.5 537,936 - EX31_RS02530 0.44 +2.5 537,936 - EX31_RS02530 0.44 +4.1 537,990 - EX31_RS02530 0.51 -0.7 537,990 - EX31_RS02530 0.51 -1.0 538,144 + EX31_RS02530 0.73 +2.5 538,145 - EX31_RS02530 0.73 +0.3 538,145 - EX31_RS02530 0.73 +0.2 538,200 - EX31_RS02530 0.81 +2.5 538,324 - +1.9 538,365 + +1.0 538,398 - -0.1 538,398 - -1.0 538,398 - +0.3 538,402 - -1.0 538,492 - -0.7 538,492 - +0.3 538,492 - +0.1 538,494 - -1.8 538,494 - -0.6 538,494 - +0.6 538,494 - -0.6 538,611 - EX31_RS02535 0.17 -0.9 538,611 - EX31_RS02535 0.17 -1.6 538,624 - EX31_RS02535 0.18 +0.4 538,643 - EX31_RS02535 0.20 +0.6 538,845 - EX31_RS02535 0.36 -1.2 538,845 - EX31_RS02535 0.36 +1.2 538,845 - EX31_RS02535 0.36 -0.8 538,845 - EX31_RS02535 0.36 -2.5 538,876 - EX31_RS02535 0.38 -0.4 538,948 - EX31_RS02535 0.44 -0.2 538,948 - EX31_RS02535 0.44 -0.4 539,005 - EX31_RS02535 0.49 +1.3 539,104 - EX31_RS02535 0.57 -0.1 539,104 - EX31_RS02535 0.57 +0.6 539,107 - EX31_RS02535 0.57 +0.4 539,151 - EX31_RS02535 0.60 +0.1 539,151 - EX31_RS02535 0.60 +0.1 539,151 - EX31_RS02535 0.60 -0.0 539,210 - EX31_RS02535 0.65 +0.3 539,254 - EX31_RS02535 0.69 -0.9 539,254 - EX31_RS02535 0.69 +0.7 539,329 - EX31_RS02535 0.75 -0.6
Or see this region's nucleotide sequence