Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02515 and EX31_RS02520 overlap by 8 nucleotides EX31_RS02520 and EX31_RS02525 are separated by 47 nucleotides
EX31_RS02515: EX31_RS02515 - PAS domain-containing protein, at 532,424 to 533,737
_RS02515
EX31_RS02520: EX31_RS02520 - sigma-54-dependent Fis family transcriptional regulator, at 533,730 to 535,142
_RS02520
EX31_RS02525: EX31_RS02525 - ABC transporter permease, at 535,190 to 537,619
_RS02525
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 533.021 kb on + strand, within EX31_RS02515 at 533.135 kb on - strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.136 kb on + strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.137 kb on - strand, within EX31_RS02515 at 533.155 kb on + strand, within EX31_RS02515 at 533.156 kb on - strand, within EX31_RS02515 at 533.156 kb on - strand, within EX31_RS02515 at 533.156 kb on - strand, within EX31_RS02515 at 533.302 kb on + strand, within EX31_RS02515 at 533.303 kb on - strand, within EX31_RS02515 at 533.303 kb on - strand, within EX31_RS02515 at 533.414 kb on + strand, within EX31_RS02515 at 533.622 kb on + strand at 533.696 kb on + strand at 533.697 kb on - strand at 533.697 kb on - strand at 533.697 kb on - strand at 533.699 kb on + strand at 533.700 kb on - strand at 533.824 kb on + strand at 534.092 kb on + strand, within EX31_RS02520 at 534.097 kb on + strand, within EX31_RS02520 at 534.098 kb on - strand, within EX31_RS02520 at 534.098 kb on - strand, within EX31_RS02520 at 534.143 kb on + strand, within EX31_RS02520 at 534.388 kb on - strand, within EX31_RS02520 at 534.388 kb on - strand, within EX31_RS02520 at 534.388 kb on - strand, within EX31_RS02520 at 534.555 kb on - strand, within EX31_RS02520 at 534.557 kb on - strand, within EX31_RS02520 at 534.645 kb on + strand, within EX31_RS02520 at 534.790 kb on - strand, within EX31_RS02520 at 535.058 kb on - strand at 535.316 kb on - strand at 535.316 kb on - strand at 535.316 kb on - strand at 535.333 kb on + strand at 535.334 kb on - strand at 535.334 kb on - strand at 535.334 kb on - strand at 535.334 kb on - strand at 535.334 kb on - strand at 535.395 kb on - strand at 535.403 kb on - strand at 535.460 kb on - strand, within EX31_RS02525 at 535.480 kb on + strand, within EX31_RS02525 at 535.481 kb on - strand, within EX31_RS02525 at 535.481 kb on - strand, within EX31_RS02525 at 535.512 kb on + strand, within EX31_RS02525 at 535.513 kb on - strand, within EX31_RS02525 at 535.513 kb on - strand, within EX31_RS02525 at 535.513 kb on - strand, within EX31_RS02525 at 535.559 kb on - strand, within EX31_RS02525 at 535.559 kb on - strand, within EX31_RS02525 at 535.559 kb on - strand, within EX31_RS02525 at 535.559 kb on - strand, within EX31_RS02525 at 535.559 kb on - strand, within EX31_RS02525 at 535.687 kb on + strand, within EX31_RS02525 at 535.753 kb on - strand, within EX31_RS02525 at 535.804 kb on + strand, within EX31_RS02525 at 536.041 kb on - strand, within EX31_RS02525 at 536.057 kb on - strand, within EX31_RS02525 at 536.057 kb on - strand, within EX31_RS02525
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 533,021 + EX31_RS02515 0.45 +2.5 533,135 - EX31_RS02515 0.54 -0.5 533,136 + EX31_RS02515 0.54 +2.5 533,136 + EX31_RS02515 0.54 +0.9 533,136 + EX31_RS02515 0.54 -0.5 533,136 + EX31_RS02515 0.54 +2.5 533,136 + EX31_RS02515 0.54 +0.9 533,136 + EX31_RS02515 0.54 +0.9 533,137 - EX31_RS02515 0.54 +3.5 533,137 - EX31_RS02515 0.54 +1.5 533,137 - EX31_RS02515 0.54 -0.5 533,137 - EX31_RS02515 0.54 +2.5 533,137 - EX31_RS02515 0.54 -0.3 533,155 + EX31_RS02515 0.56 +1.5 533,156 - EX31_RS02515 0.56 +2.5 533,156 - EX31_RS02515 0.56 +0.9 533,156 - EX31_RS02515 0.56 +0.9 533,302 + EX31_RS02515 0.67 -0.5 533,303 - EX31_RS02515 0.67 +2.5 533,303 - EX31_RS02515 0.67 +2.5 533,414 + EX31_RS02515 0.75 +1.5 533,622 + +0.9 533,696 + -0.1 533,697 - +2.5 533,697 - +0.9 533,697 - -0.1 533,699 + +1.5 533,700 - +0.7 533,824 + +1.5 534,092 + EX31_RS02520 0.26 +1.5 534,097 + EX31_RS02520 0.26 -0.1 534,098 - EX31_RS02520 0.26 +0.5 534,098 - EX31_RS02520 0.26 -0.5 534,143 + EX31_RS02520 0.29 +0.7 534,388 - EX31_RS02520 0.47 +2.5 534,388 - EX31_RS02520 0.47 -1.4 534,388 - EX31_RS02520 0.47 +0.9 534,555 - EX31_RS02520 0.58 +0.2 534,557 - EX31_RS02520 0.59 +1.5 534,645 + EX31_RS02520 0.65 +2.5 534,790 - EX31_RS02520 0.75 +0.9 535,058 - +0.9 535,316 - -0.5 535,316 - -0.0 535,316 - +0.1 535,333 + +0.9 535,334 - -0.9 535,334 - -2.6 535,334 - -0.3 535,334 - -0.5 535,334 - +0.7 535,395 - -0.7 535,403 - +1.1 535,460 - EX31_RS02525 0.11 -0.2 535,480 + EX31_RS02525 0.12 -0.7 535,481 - EX31_RS02525 0.12 -1.0 535,481 - EX31_RS02525 0.12 -0.8 535,512 + EX31_RS02525 0.13 -0.5 535,513 - EX31_RS02525 0.13 +0.2 535,513 - EX31_RS02525 0.13 -1.0 535,513 - EX31_RS02525 0.13 -0.1 535,559 - EX31_RS02525 0.15 -1.4 535,559 - EX31_RS02525 0.15 +0.3 535,559 - EX31_RS02525 0.15 -0.8 535,559 - EX31_RS02525 0.15 -0.7 535,559 - EX31_RS02525 0.15 -0.7 535,687 + EX31_RS02525 0.20 +0.9 535,753 - EX31_RS02525 0.23 -2.8 535,804 + EX31_RS02525 0.25 -0.1 536,041 - EX31_RS02525 0.35 -0.9 536,057 - EX31_RS02525 0.36 +0.2 536,057 - EX31_RS02525 0.36 -0.7
Or see this region's nucleotide sequence