Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02325 and EX31_RS02330 are separated by 171 nucleotides EX31_RS02330 and EX31_RS02335 are separated by 183 nucleotides EX31_RS02335 and EX31_RS02340 overlap by 56 nucleotides EX31_RS02340 and EX31_RS02345 are separated by 99 nucleotides EX31_RS02345 and EX31_RS02350 are separated by 110 nucleotides
EX31_RS02325: EX31_RS02325 - GNAT family N-acetyltransferase, at 502,616 to 503,158
_RS02325
EX31_RS02330: EX31_RS02330 - hypothetical protein, at 503,330 to 503,569
_RS02330
EX31_RS02335: EX31_RS02335 - hypothetical protein, at 503,753 to 504,046
_RS02335
EX31_RS02340: EX31_RS02340 - hypothetical protein, at 503,991 to 504,362
_RS02340
EX31_RS02345: EX31_RS02345 - hypothetical protein, at 504,462 to 504,719
_RS02345
EX31_RS02350: EX31_RS02350 - diguanylate phosphodiesterase, at 504,830 to 506,071
_RS02350
Position (kb) 503
504
505 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.105 kb on + strand at 503.105 kb on + strand at 503.105 kb on + strand at 503.161 kb on + strand at 503.162 kb on - strand at 503.251 kb on - strand at 503.270 kb on - strand at 503.271 kb on + strand at 503.277 kb on + strand at 503.298 kb on + strand at 503.298 kb on + strand at 503.298 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.310 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.326 kb on - strand at 503.330 kb on - strand at 503.379 kb on + strand, within EX31_RS02330 at 503.381 kb on + strand, within EX31_RS02330 at 503.381 kb on + strand, within EX31_RS02330 at 503.381 kb on + strand, within EX31_RS02330 at 503.382 kb on - strand, within EX31_RS02330 at 503.469 kb on + strand, within EX31_RS02330 at 503.469 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.528 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.530 kb on + strand, within EX31_RS02330 at 503.531 kb on - strand, within EX31_RS02330 at 503.539 kb on + strand, within EX31_RS02330 at 503.581 kb on + strand at 503.589 kb on + strand at 503.589 kb on + strand at 503.589 kb on + strand at 503.609 kb on + strand at 503.609 kb on + strand at 503.627 kb on + strand at 503.627 kb on + strand at 503.680 kb on + strand at 503.685 kb on + strand at 503.706 kb on + strand at 503.706 kb on + strand at 503.733 kb on + strand at 503.734 kb on - strand at 503.735 kb on + strand at 503.735 kb on + strand at 503.735 kb on + strand at 503.735 kb on + strand at 503.735 kb on + strand at 503.749 kb on + strand at 503.752 kb on + strand at 503.752 kb on + strand at 503.752 kb on + strand at 503.756 kb on + strand at 503.785 kb on + strand, within EX31_RS02335 at 503.793 kb on + strand, within EX31_RS02335 at 503.818 kb on + strand, within EX31_RS02335 at 503.818 kb on + strand, within EX31_RS02335 at 503.869 kb on + strand, within EX31_RS02335 at 503.892 kb on + strand, within EX31_RS02335 at 503.892 kb on + strand, within EX31_RS02335 at 503.892 kb on + strand, within EX31_RS02335 at 503.892 kb on + strand, within EX31_RS02335 at 503.892 kb on + strand, within EX31_RS02335 at 503.920 kb on + strand, within EX31_RS02335 at 503.923 kb on + strand, within EX31_RS02335 at 503.965 kb on + strand, within EX31_RS02335 at 503.965 kb on + strand, within EX31_RS02335 at 503.969 kb on + strand, within EX31_RS02335 at 503.994 kb on + strand at 504.138 kb on + strand, within EX31_RS02340 at 504.144 kb on + strand, within EX31_RS02340 at 504.239 kb on + strand, within EX31_RS02340 at 504.239 kb on + strand, within EX31_RS02340 at 504.239 kb on + strand, within EX31_RS02340 at 504.248 kb on + strand, within EX31_RS02340 at 504.248 kb on + strand, within EX31_RS02340 at 504.248 kb on + strand, within EX31_RS02340 at 504.248 kb on + strand, within EX31_RS02340 at 504.250 kb on + strand, within EX31_RS02340 at 504.251 kb on - strand, within EX31_RS02340 at 504.311 kb on + strand, within EX31_RS02340 at 504.374 kb on + strand at 504.380 kb on + strand at 504.385 kb on + strand at 504.501 kb on + strand, within EX31_RS02345 at 504.501 kb on + strand, within EX31_RS02345 at 504.568 kb on + strand, within EX31_RS02345 at 504.661 kb on + strand, within EX31_RS02345 at 504.661 kb on + strand, within EX31_RS02345 at 504.667 kb on + strand, within EX31_RS02345 at 504.667 kb on + strand, within EX31_RS02345 at 504.681 kb on + strand, within EX31_RS02345 at 504.717 kb on + strand at 504.717 kb on + strand at 504.717 kb on + strand at 504.720 kb on + strand at 504.720 kb on + strand at 504.720 kb on + strand at 504.721 kb on - strand at 504.722 kb on + strand at 504.722 kb on + strand at 504.722 kb on + strand at 504.722 kb on + strand at 504.722 kb on + strand at 504.855 kb on + strand at 504.856 kb on - strand at 504.866 kb on - strand at 504.935 kb on - strand at 504.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 503,105 + -0.7 503,105 + -0.5 503,105 + +0.3 503,161 + +0.3 503,162 - -0.9 503,251 - -0.3 503,270 - +0.3 503,271 + +1.2 503,277 + -0.9 503,298 + -0.2 503,298 + +0.4 503,298 + +0.7 503,310 + -0.1 503,310 + -1.8 503,310 + -0.0 503,310 + -0.5 503,310 + -1.8 503,318 + -0.1 503,318 + +0.4 503,318 + -0.2 503,318 + +0.1 503,318 + -0.8 503,319 - -1.2 503,319 - +0.1 503,326 - -0.9 503,330 - -0.8 503,379 + EX31_RS02330 0.20 -0.2 503,381 + EX31_RS02330 0.21 +0.2 503,381 + EX31_RS02330 0.21 -0.7 503,381 + EX31_RS02330 0.21 -0.2 503,382 - EX31_RS02330 0.22 +1.0 503,469 + EX31_RS02330 0.58 -0.3 503,469 + EX31_RS02330 0.58 -0.7 503,528 + EX31_RS02330 0.82 +0.1 503,528 + EX31_RS02330 0.82 -0.5 503,528 + EX31_RS02330 0.82 -0.3 503,528 + EX31_RS02330 0.82 -0.2 503,528 + EX31_RS02330 0.82 -0.0 503,528 + EX31_RS02330 0.82 -0.7 503,530 + EX31_RS02330 0.83 +0.1 503,530 + EX31_RS02330 0.83 -0.6 503,530 + EX31_RS02330 0.83 +0.6 503,530 + EX31_RS02330 0.83 -0.3 503,530 + EX31_RS02330 0.83 -0.1 503,531 - EX31_RS02330 0.84 +0.1 503,539 + EX31_RS02330 0.87 +0.0 503,581 + -0.4 503,589 + -0.3 503,589 + -0.5 503,589 + -0.3 503,609 + +0.0 503,609 + +1.9 503,627 + -0.8 503,627 + +0.3 503,680 + +0.2 503,685 + +0.3 503,706 + -0.4 503,706 + +0.7 503,733 + +0.3 503,734 - +0.1 503,735 + -0.6 503,735 + -0.3 503,735 + -0.2 503,735 + +0.3 503,735 + -0.0 503,749 + -0.5 503,752 + +0.4 503,752 + -1.0 503,752 + +0.3 503,756 + +0.5 503,785 + EX31_RS02335 0.11 -0.6 503,793 + EX31_RS02335 0.14 -0.2 503,818 + EX31_RS02335 0.22 -1.3 503,818 + EX31_RS02335 0.22 -1.2 503,869 + EX31_RS02335 0.39 -0.3 503,892 + EX31_RS02335 0.47 -0.4 503,892 + EX31_RS02335 0.47 -0.5 503,892 + EX31_RS02335 0.47 -1.0 503,892 + EX31_RS02335 0.47 -0.0 503,892 + EX31_RS02335 0.47 -0.4 503,920 + EX31_RS02335 0.57 +0.5 503,923 + EX31_RS02335 0.58 -1.2 503,965 + EX31_RS02335 0.72 -1.0 503,965 + EX31_RS02335 0.72 -0.3 503,969 + EX31_RS02335 0.73 +0.5 503,994 + -1.8 504,138 + EX31_RS02340 0.40 -0.2 504,144 + EX31_RS02340 0.41 -1.0 504,239 + EX31_RS02340 0.67 +0.8 504,239 + EX31_RS02340 0.67 +1.1 504,239 + EX31_RS02340 0.67 -0.4 504,248 + EX31_RS02340 0.69 -1.8 504,248 + EX31_RS02340 0.69 -1.8 504,248 + EX31_RS02340 0.69 -0.1 504,248 + EX31_RS02340 0.69 -0.2 504,250 + EX31_RS02340 0.70 +0.1 504,251 - EX31_RS02340 0.70 +0.9 504,311 + EX31_RS02340 0.86 -0.3 504,374 + +0.3 504,380 + -1.3 504,385 + +1.3 504,501 + EX31_RS02345 0.15 -0.2 504,501 + EX31_RS02345 0.15 +0.7 504,568 + EX31_RS02345 0.41 +0.1 504,661 + EX31_RS02345 0.77 -0.7 504,661 + EX31_RS02345 0.77 +0.9 504,667 + EX31_RS02345 0.79 +0.6 504,667 + EX31_RS02345 0.79 -1.5 504,681 + EX31_RS02345 0.85 -1.1 504,717 + -0.4 504,717 + +0.2 504,717 + +0.9 504,720 + -0.9 504,720 + +0.4 504,720 + +0.3 504,721 - +0.3 504,722 + +1.2 504,722 + -0.2 504,722 + -0.8 504,722 + +1.6 504,722 + -0.8 504,855 + -0.6 504,856 - +0.4 504,866 - +0.5 504,935 - +0.7 504,935 - -0.3
Or see this region's nucleotide sequence