Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02105 and EX31_RS02110 overlap by 4 nucleotides EX31_RS02110 and EX31_RS02115 are separated by 112 nucleotides EX31_RS02115 and EX31_RS02120 are separated by 195 nucleotides
EX31_RS02105: EX31_RS02105 - SDR family oxidoreductase, at 461,427 to 462,203
_RS02105
EX31_RS02110: EX31_RS02110 - L-rhamnose mutarotase, at 462,200 to 462,544
_RS02110
EX31_RS02115: EX31_RS02115 - L-fucose:H+ symporter permease, at 462,657 to 463,895
_RS02115
EX31_RS02120: EX31_RS02120 - MFS transporter, at 464,091 to 465,296
_RS02120
Position (kb) 462
463
464 Strain fitness (log2 ratio) -2
-1
0
1
2 at 461.694 kb on - strand, within EX31_RS02105 at 461.775 kb on + strand, within EX31_RS02105 at 461.779 kb on - strand, within EX31_RS02105 at 461.838 kb on - strand, within EX31_RS02105 at 462.077 kb on + strand, within EX31_RS02105 at 462.077 kb on + strand, within EX31_RS02105 at 462.078 kb on - strand, within EX31_RS02105 at 462.078 kb on - strand, within EX31_RS02105 at 462.174 kb on + strand at 462.175 kb on - strand at 462.175 kb on - strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.176 kb on + strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.177 kb on - strand at 462.251 kb on - strand, within EX31_RS02110 at 462.251 kb on - strand, within EX31_RS02110 at 462.260 kb on + strand, within EX31_RS02110 at 462.261 kb on - strand, within EX31_RS02110 at 462.261 kb on - strand, within EX31_RS02110 at 462.462 kb on - strand, within EX31_RS02110 at 462.542 kb on + strand at 462.542 kb on + strand at 462.542 kb on + strand at 462.542 kb on + strand at 462.542 kb on + strand at 462.542 kb on + strand at 462.543 kb on - strand at 462.543 kb on - strand at 462.546 kb on + strand at 462.546 kb on + strand at 462.547 kb on - strand at 462.547 kb on - strand at 462.547 kb on - strand at 462.547 kb on - strand at 462.547 kb on - strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.548 kb on + strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.549 kb on - strand at 462.561 kb on + strand at 462.561 kb on + strand at 462.561 kb on + strand at 462.562 kb on - strand at 462.562 kb on - strand at 462.588 kb on - strand at 462.596 kb on + strand at 462.597 kb on - strand at 462.625 kb on + strand at 462.625 kb on + strand at 462.626 kb on - strand at 462.641 kb on + strand at 462.642 kb on - strand at 462.651 kb on + strand at 462.652 kb on - strand at 462.652 kb on - strand at 462.769 kb on - strand at 462.792 kb on - strand, within EX31_RS02115 at 462.821 kb on + strand, within EX31_RS02115 at 462.864 kb on + strand, within EX31_RS02115 at 462.869 kb on + strand, within EX31_RS02115 at 462.870 kb on - strand, within EX31_RS02115 at 462.945 kb on + strand, within EX31_RS02115 at 462.946 kb on - strand, within EX31_RS02115 at 463.230 kb on + strand, within EX31_RS02115 at 463.230 kb on + strand, within EX31_RS02115 at 463.231 kb on - strand, within EX31_RS02115 at 463.231 kb on - strand, within EX31_RS02115 at 463.250 kb on - strand, within EX31_RS02115 at 463.389 kb on + strand, within EX31_RS02115 at 463.428 kb on - strand, within EX31_RS02115 at 463.428 kb on - strand, within EX31_RS02115 at 463.428 kb on - strand, within EX31_RS02115 at 463.428 kb on - strand, within EX31_RS02115 at 463.431 kb on + strand, within EX31_RS02115 at 463.431 kb on + strand, within EX31_RS02115 at 463.432 kb on - strand, within EX31_RS02115 at 463.432 kb on - strand, within EX31_RS02115 at 463.432 kb on - strand, within EX31_RS02115 at 463.432 kb on - strand, within EX31_RS02115 at 463.432 kb on - strand, within EX31_RS02115 at 463.432 kb on - strand, within EX31_RS02115 at 463.432 kb on - strand, within EX31_RS02115 at 463.476 kb on + strand, within EX31_RS02115 at 463.477 kb on - strand, within EX31_RS02115 at 463.505 kb on + strand, within EX31_RS02115 at 463.573 kb on - strand, within EX31_RS02115 at 463.587 kb on - strand, within EX31_RS02115 at 463.587 kb on - strand, within EX31_RS02115 at 463.623 kb on - strand, within EX31_RS02115 at 463.662 kb on - strand, within EX31_RS02115 at 463.803 kb on + strand at 463.803 kb on + strand at 463.804 kb on - strand at 463.804 kb on - strand at 463.822 kb on - strand at 463.837 kb on + strand at 463.837 kb on + strand at 463.838 kb on - strand at 463.838 kb on - strand at 463.838 kb on - strand at 463.838 kb on - strand at 463.838 kb on - strand at 463.838 kb on - strand at 463.907 kb on + strand at 463.950 kb on - strand at 464.044 kb on + strand at 464.044 kb on + strand at 464.044 kb on + strand at 464.045 kb on - strand at 464.045 kb on - strand at 464.045 kb on - strand at 464.056 kb on + strand at 464.056 kb on + strand at 464.057 kb on - strand at 464.058 kb on + strand at 464.059 kb on - strand at 464.059 kb on - strand at 464.404 kb on + strand, within EX31_RS02120 at 464.404 kb on + strand, within EX31_RS02120 at 464.600 kb on - strand, within EX31_RS02120 at 464.600 kb on - strand, within EX31_RS02120 at 464.641 kb on + strand, within EX31_RS02120 at 464.641 kb on + strand, within EX31_RS02120 at 464.641 kb on + strand, within EX31_RS02120 at 464.641 kb on + strand, within EX31_RS02120 at 464.717 kb on + strand, within EX31_RS02120 at 464.835 kb on + strand, within EX31_RS02120 at 464.835 kb on + strand, within EX31_RS02120 at 464.835 kb on + strand, within EX31_RS02120 at 464.836 kb on - strand, within EX31_RS02120 at 464.836 kb on - strand, within EX31_RS02120 at 464.856 kb on - strand, within EX31_RS02120 at 464.856 kb on - strand, within EX31_RS02120 at 464.856 kb on - strand, within EX31_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 461,694 - EX31_RS02105 0.34 +0.2 461,775 + EX31_RS02105 0.45 -0.1 461,779 - EX31_RS02105 0.45 -0.1 461,838 - EX31_RS02105 0.53 +0.5 462,077 + EX31_RS02105 0.84 +1.0 462,077 + EX31_RS02105 0.84 +0.6 462,078 - EX31_RS02105 0.84 +0.2 462,078 - EX31_RS02105 0.84 -1.3 462,174 + -2.3 462,175 - +1.7 462,175 - -1.2 462,176 + -0.3 462,176 + -0.7 462,176 + +0.1 462,176 + +0.9 462,176 + -0.5 462,177 - +0.2 462,177 - -0.9 462,177 - -0.6 462,177 - -0.6 462,177 - +0.8 462,177 - -0.8 462,251 - EX31_RS02110 0.15 +0.3 462,251 - EX31_RS02110 0.15 -0.3 462,260 + EX31_RS02110 0.17 -0.4 462,261 - EX31_RS02110 0.18 -0.2 462,261 - EX31_RS02110 0.18 -0.7 462,462 - EX31_RS02110 0.76 -0.7 462,542 + -1.8 462,542 + -0.1 462,542 + -0.5 462,542 + +0.9 462,542 + +0.8 462,542 + +0.9 462,543 - +0.7 462,543 - +0.7 462,546 + -0.6 462,546 + -1.6 462,547 - -2.2 462,547 - -0.2 462,547 - -0.1 462,547 - +0.1 462,547 - +0.6 462,548 + -0.9 462,548 + +0.4 462,548 + +0.2 462,548 + -0.6 462,548 + -1.0 462,548 + +0.1 462,548 + -0.2 462,548 + +0.1 462,548 + +0.3 462,548 + +0.4 462,548 + -0.6 462,548 + -0.1 462,548 + +0.2 462,548 + -0.4 462,548 + -0.2 462,548 + -0.2 462,548 + -0.2 462,548 + +0.6 462,548 + -0.9 462,548 + -0.3 462,548 + -0.2 462,548 + +0.9 462,548 + +1.0 462,548 + +0.2 462,548 + -1.4 462,548 + -0.2 462,548 + -0.5 462,548 + +0.4 462,548 + +0.8 462,548 + -0.8 462,549 - +0.7 462,549 - -0.6 462,549 - +0.0 462,549 - -2.0 462,549 - -0.1 462,549 - +1.0 462,549 - +0.0 462,549 - -0.0 462,549 - -0.3 462,549 - -0.1 462,549 - -1.0 462,549 - -0.3 462,549 - +0.3 462,549 - -0.2 462,549 - +0.3 462,549 - +0.5 462,549 - +0.9 462,549 - +0.4 462,549 - +0.1 462,549 - -0.0 462,549 - -0.1 462,561 + +0.3 462,561 + +0.1 462,561 + +0.4 462,562 - -0.4 462,562 - -0.0 462,588 - +0.7 462,596 + +0.1 462,597 - +0.1 462,625 + -0.6 462,625 + -2.0 462,626 - -0.5 462,641 + -1.3 462,642 - -0.3 462,651 + -0.1 462,652 - +1.2 462,652 - -0.3 462,769 - +0.2 462,792 - EX31_RS02115 0.11 +0.5 462,821 + EX31_RS02115 0.13 +0.4 462,864 + EX31_RS02115 0.17 -0.2 462,869 + EX31_RS02115 0.17 -0.9 462,870 - EX31_RS02115 0.17 -0.6 462,945 + EX31_RS02115 0.23 +0.4 462,946 - EX31_RS02115 0.23 -0.7 463,230 + EX31_RS02115 0.46 +0.4 463,230 + EX31_RS02115 0.46 -0.4 463,231 - EX31_RS02115 0.46 +1.4 463,231 - EX31_RS02115 0.46 -0.8 463,250 - EX31_RS02115 0.48 +0.1 463,389 + EX31_RS02115 0.59 +0.7 463,428 - EX31_RS02115 0.62 -0.3 463,428 - EX31_RS02115 0.62 +1.9 463,428 - EX31_RS02115 0.62 +0.2 463,428 - EX31_RS02115 0.62 +0.2 463,431 + EX31_RS02115 0.62 -0.3 463,431 + EX31_RS02115 0.62 +0.5 463,432 - EX31_RS02115 0.63 -1.1 463,432 - EX31_RS02115 0.63 +1.0 463,432 - EX31_RS02115 0.63 -0.6 463,432 - EX31_RS02115 0.63 -0.7 463,432 - EX31_RS02115 0.63 -0.8 463,432 - EX31_RS02115 0.63 -0.1 463,432 - EX31_RS02115 0.63 +0.4 463,476 + EX31_RS02115 0.66 +0.6 463,477 - EX31_RS02115 0.66 +0.2 463,505 + EX31_RS02115 0.68 +0.9 463,573 - EX31_RS02115 0.74 -0.7 463,587 - EX31_RS02115 0.75 -0.3 463,587 - EX31_RS02115 0.75 +1.7 463,623 - EX31_RS02115 0.78 -0.1 463,662 - EX31_RS02115 0.81 +0.2 463,803 + -0.3 463,803 + -1.2 463,804 - -0.1 463,804 - -1.0 463,822 - +0.1 463,837 + -0.3 463,837 + -0.4 463,838 - -1.3 463,838 - -0.0 463,838 - +0.9 463,838 - -0.6 463,838 - -1.5 463,838 - +0.7 463,907 + -0.0 463,950 - -1.4 464,044 + +0.2 464,044 + +0.9 464,044 + -0.2 464,045 - +0.2 464,045 - +0.3 464,045 - +1.2 464,056 + -0.5 464,056 + -1.7 464,057 - +0.5 464,058 + -0.7 464,059 - +0.7 464,059 - +0.6 464,404 + EX31_RS02120 0.26 +0.4 464,404 + EX31_RS02120 0.26 -0.4 464,600 - EX31_RS02120 0.42 +0.6 464,600 - EX31_RS02120 0.42 -0.3 464,641 + EX31_RS02120 0.46 -0.1 464,641 + EX31_RS02120 0.46 -0.0 464,641 + EX31_RS02120 0.46 -0.0 464,641 + EX31_RS02120 0.46 +1.7 464,717 + EX31_RS02120 0.52 -0.3 464,835 + EX31_RS02120 0.62 -1.0 464,835 + EX31_RS02120 0.62 -0.2 464,835 + EX31_RS02120 0.62 +0.3 464,836 - EX31_RS02120 0.62 -0.5 464,836 - EX31_RS02120 0.62 +0.3 464,856 - EX31_RS02120 0.63 -1.4 464,856 - EX31_RS02120 0.63 -1.8 464,856 - EX31_RS02120 0.63 +0.7
Or see this region's nucleotide sequence