Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01275 and EX31_RS01280 are separated by 43 nucleotides EX31_RS01280 and EX31_RS01285 are separated by 3 nucleotides EX31_RS01285 and EX31_RS01290 are separated by 107 nucleotides
EX31_RS01275: EX31_RS01275 - acyltransferase, at 283,463 to 284,452
_RS01275
EX31_RS01280: EX31_RS01280 - SgcJ/EcaC family oxidoreductase, at 284,496 to 284,894
_RS01280
EX31_RS01285: EX31_RS01285 - sulfite exporter TauE/SafE family protein, at 284,898 to 285,623
_RS01285
EX31_RS01290: EX31_RS01290 - LysR family transcriptional regulator, at 285,731 to 286,621
_RS01290
Position (kb) 284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 283.531 kb on + strand at 283.585 kb on + strand, within EX31_RS01275 at 283.609 kb on + strand, within EX31_RS01275 at 283.609 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.776 kb on - strand, within EX31_RS01275 at 283.776 kb on - strand, within EX31_RS01275 at 283.776 kb on - strand, within EX31_RS01275 at 283.777 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.872 kb on - strand, within EX31_RS01275 at 283.872 kb on - strand, within EX31_RS01275 at 283.980 kb on + strand, within EX31_RS01275 at 284.099 kb on - strand, within EX31_RS01275 at 284.208 kb on + strand, within EX31_RS01275 at 284.208 kb on + strand, within EX31_RS01275 at 284.364 kb on - strand at 284.368 kb on + strand at 284.368 kb on + strand at 284.368 kb on + strand at 284.368 kb on + strand at 284.498 kb on - strand at 284.579 kb on - strand, within EX31_RS01280 at 284.579 kb on - strand, within EX31_RS01280 at 284.697 kb on + strand, within EX31_RS01280 at 284.719 kb on + strand, within EX31_RS01280 at 284.888 kb on + strand at 284.899 kb on + strand at 284.946 kb on + strand at 284.991 kb on - strand, within EX31_RS01285 at 284.991 kb on - strand, within EX31_RS01285 at 284.991 kb on - strand, within EX31_RS01285 at 284.991 kb on - strand, within EX31_RS01285 at 285.112 kb on + strand, within EX31_RS01285 at 285.113 kb on - strand, within EX31_RS01285 at 285.272 kb on + strand, within EX31_RS01285 at 285.338 kb on + strand, within EX31_RS01285 at 285.339 kb on - strand, within EX31_RS01285 at 285.339 kb on - strand, within EX31_RS01285 at 285.339 kb on - strand, within EX31_RS01285 at 285.371 kb on + strand, within EX31_RS01285 at 285.412 kb on + strand, within EX31_RS01285 at 285.480 kb on - strand, within EX31_RS01285 at 285.526 kb on + strand, within EX31_RS01285 at 285.526 kb on + strand, within EX31_RS01285 at 285.527 kb on - strand, within EX31_RS01285 at 285.595 kb on - strand at 285.619 kb on + strand at 285.619 kb on + strand at 285.619 kb on + strand at 285.619 kb on + strand at 285.619 kb on + strand at 285.619 kb on + strand at 285.619 kb on + strand at 285.619 kb on + strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.620 kb on - strand at 285.665 kb on + strand at 285.707 kb on - strand at 285.707 kb on - strand at 285.707 kb on - strand at 285.816 kb on + strand at 285.816 kb on + strand at 285.816 kb on + strand at 285.817 kb on - strand at 285.817 kb on - strand at 285.883 kb on - strand, within EX31_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 283,531 + -0.3 283,585 + EX31_RS01275 0.12 -2.9 283,609 + EX31_RS01275 0.15 -0.4 283,609 + EX31_RS01275 0.15 +0.4 283,775 + EX31_RS01275 0.32 -0.7 283,775 + EX31_RS01275 0.32 +0.5 283,775 + EX31_RS01275 0.32 +0.4 283,775 + EX31_RS01275 0.32 +1.1 283,775 + EX31_RS01275 0.32 +0.1 283,775 + EX31_RS01275 0.32 +0.1 283,775 + EX31_RS01275 0.32 +0.5 283,775 + EX31_RS01275 0.32 +0.4 283,775 + EX31_RS01275 0.32 -0.3 283,775 + EX31_RS01275 0.32 +1.1 283,776 - EX31_RS01275 0.32 +0.8 283,776 - EX31_RS01275 0.32 +0.8 283,776 - EX31_RS01275 0.32 -0.7 283,777 + EX31_RS01275 0.32 -0.4 283,871 + EX31_RS01275 0.41 -0.9 283,871 + EX31_RS01275 0.41 -0.1 283,871 + EX31_RS01275 0.41 -0.8 283,871 + EX31_RS01275 0.41 +1.2 283,872 - EX31_RS01275 0.41 +0.9 283,872 - EX31_RS01275 0.41 -0.3 283,980 + EX31_RS01275 0.52 -0.5 284,099 - EX31_RS01275 0.64 -0.1 284,208 + EX31_RS01275 0.75 +0.3 284,208 + EX31_RS01275 0.75 +0.7 284,364 - +1.1 284,368 + +0.7 284,368 + -1.5 284,368 + -0.3 284,368 + +0.4 284,498 - +0.9 284,579 - EX31_RS01280 0.21 -0.1 284,579 - EX31_RS01280 0.21 +0.3 284,697 + EX31_RS01280 0.50 -1.7 284,719 + EX31_RS01280 0.56 -0.5 284,888 + -1.4 284,899 + +1.1 284,946 + +0.7 284,991 - EX31_RS01285 0.13 +0.5 284,991 - EX31_RS01285 0.13 -0.7 284,991 - EX31_RS01285 0.13 +1.1 284,991 - EX31_RS01285 0.13 +0.6 285,112 + EX31_RS01285 0.29 -0.4 285,113 - EX31_RS01285 0.30 +0.6 285,272 + EX31_RS01285 0.52 +0.3 285,338 + EX31_RS01285 0.61 -1.7 285,339 - EX31_RS01285 0.61 +0.2 285,339 - EX31_RS01285 0.61 -2.4 285,339 - EX31_RS01285 0.61 +1.9 285,371 + EX31_RS01285 0.65 +1.0 285,412 + EX31_RS01285 0.71 +0.6 285,480 - EX31_RS01285 0.80 +0.0 285,526 + EX31_RS01285 0.87 +0.1 285,526 + EX31_RS01285 0.87 -0.1 285,527 - EX31_RS01285 0.87 +0.0 285,595 - +0.8 285,619 + -0.3 285,619 + +0.7 285,619 + +0.7 285,619 + -0.4 285,619 + -0.5 285,619 + -0.9 285,619 + -0.2 285,619 + -0.3 285,620 - -0.7 285,620 - -1.7 285,620 - -0.1 285,620 - -1.0 285,620 - -0.8 285,620 - -0.5 285,620 - +0.2 285,620 - -0.1 285,620 - +1.0 285,620 - -0.6 285,665 + +1.5 285,707 - -0.8 285,707 - -0.9 285,707 - -0.2 285,816 + +1.2 285,816 + +0.6 285,816 + +0.5 285,817 - +0.7 285,817 - -2.1 285,883 - EX31_RS01290 0.17 +0.6
Or see this region's nucleotide sequence