Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01035 and EX31_RS01040 are separated by 154 nucleotides EX31_RS01040 and EX31_RS01045 are separated by 13 nucleotides EX31_RS01045 and EX31_RS01050 are separated by 138 nucleotides
EX31_RS01035: EX31_RS01035 - hypothetical protein, at 227,886 to 228,695
_RS01035
EX31_RS01040: EX31_RS01040 - serine hydrolase, at 228,850 to 229,737
_RS01040
EX31_RS01045: EX31_RS01045 - VOC family protein, at 229,751 to 230,146
_RS01045
EX31_RS01050: EX31_RS01050 - ROK family protein, at 230,285 to 231,283
_RS01050
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2 at 227.888 kb on - strand at 227.911 kb on - strand at 227.921 kb on + strand at 227.922 kb on - strand at 228.120 kb on + strand, within EX31_RS01035 at 228.362 kb on - strand, within EX31_RS01035 at 228.362 kb on - strand, within EX31_RS01035 at 228.366 kb on + strand, within EX31_RS01035 at 228.366 kb on + strand, within EX31_RS01035 at 228.366 kb on + strand, within EX31_RS01035 at 228.366 kb on + strand, within EX31_RS01035 at 228.366 kb on + strand, within EX31_RS01035 at 228.367 kb on - strand, within EX31_RS01035 at 228.367 kb on - strand, within EX31_RS01035 at 228.367 kb on - strand, within EX31_RS01035 at 228.443 kb on - strand, within EX31_RS01035 at 228.443 kb on - strand, within EX31_RS01035 at 228.455 kb on + strand, within EX31_RS01035 at 228.455 kb on + strand, within EX31_RS01035 at 228.456 kb on - strand, within EX31_RS01035 at 228.456 kb on - strand, within EX31_RS01035 at 228.456 kb on - strand, within EX31_RS01035 at 228.456 kb on - strand, within EX31_RS01035 at 228.478 kb on - strand, within EX31_RS01035 at 228.478 kb on - strand, within EX31_RS01035 at 228.518 kb on + strand, within EX31_RS01035 at 228.519 kb on - strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.535 kb on + strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.536 kb on - strand, within EX31_RS01035 at 228.654 kb on + strand at 228.655 kb on - strand at 228.689 kb on - strand at 228.689 kb on - strand at 228.696 kb on - strand at 228.696 kb on - strand at 228.696 kb on - strand at 228.735 kb on + strand at 228.741 kb on + strand at 228.741 kb on + strand at 228.741 kb on + strand at 228.742 kb on - strand at 228.742 kb on - strand at 228.742 kb on - strand at 228.743 kb on + strand at 228.743 kb on + strand at 228.743 kb on + strand at 228.805 kb on + strand at 228.805 kb on + strand at 228.805 kb on + strand at 228.806 kb on - strand at 228.868 kb on + strand at 228.869 kb on - strand at 228.869 kb on - strand at 228.874 kb on - strand at 229.024 kb on + strand, within EX31_RS01040 at 229.024 kb on + strand, within EX31_RS01040 at 229.026 kb on + strand, within EX31_RS01040 at 229.026 kb on + strand, within EX31_RS01040 at 229.027 kb on - strand, within EX31_RS01040 at 229.027 kb on - strand, within EX31_RS01040 at 229.027 kb on - strand, within EX31_RS01040 at 229.027 kb on - strand, within EX31_RS01040 at 229.087 kb on + strand, within EX31_RS01040 at 229.363 kb on + strand, within EX31_RS01040 at 229.364 kb on - strand, within EX31_RS01040 at 229.381 kb on + strand, within EX31_RS01040 at 229.382 kb on - strand, within EX31_RS01040 at 229.437 kb on - strand, within EX31_RS01040 at 229.489 kb on + strand, within EX31_RS01040 at 229.627 kb on + strand, within EX31_RS01040 at 229.671 kb on + strand at 229.682 kb on - strand at 229.777 kb on + strand at 229.777 kb on + strand at 229.778 kb on - strand at 229.778 kb on - strand at 229.778 kb on - strand at 229.786 kb on + strand at 229.786 kb on + strand at 229.786 kb on + strand at 229.809 kb on + strand, within EX31_RS01045 at 229.810 kb on - strand, within EX31_RS01045 at 229.822 kb on - strand, within EX31_RS01045 at 229.833 kb on + strand, within EX31_RS01045 at 229.844 kb on + strand, within EX31_RS01045 at 229.845 kb on - strand, within EX31_RS01045 at 229.887 kb on + strand, within EX31_RS01045 at 229.887 kb on + strand, within EX31_RS01045 at 229.887 kb on + strand, within EX31_RS01045 at 229.888 kb on - strand, within EX31_RS01045 at 229.888 kb on - strand, within EX31_RS01045 at 229.888 kb on - strand, within EX31_RS01045 at 229.893 kb on + strand, within EX31_RS01045 at 229.894 kb on - strand, within EX31_RS01045 at 229.894 kb on - strand, within EX31_RS01045 at 230.230 kb on + strand at 230.251 kb on - strand at 230.269 kb on + strand at 230.305 kb on + strand at 230.347 kb on + strand at 230.348 kb on - strand at 230.511 kb on - strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.516 kb on + strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.517 kb on - strand, within EX31_RS01050 at 230.518 kb on + strand, within EX31_RS01050 at 230.519 kb on - strand, within EX31_RS01050 at 230.549 kb on + strand, within EX31_RS01050 at 230.582 kb on - strand, within EX31_RS01050 at 230.664 kb on - strand, within EX31_RS01050
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 227,888 - -0.1 227,911 - +2.4 227,921 + +0.3 227,922 - -0.7 228,120 + EX31_RS01035 0.29 -0.5 228,362 - EX31_RS01035 0.59 -0.5 228,362 - EX31_RS01035 0.59 +0.5 228,366 + EX31_RS01035 0.59 -1.1 228,366 + EX31_RS01035 0.59 +1.2 228,366 + EX31_RS01035 0.59 +0.8 228,366 + EX31_RS01035 0.59 -2.2 228,366 + EX31_RS01035 0.59 +0.9 228,367 - EX31_RS01035 0.59 -1.8 228,367 - EX31_RS01035 0.59 +1.7 228,367 - EX31_RS01035 0.59 +0.5 228,443 - EX31_RS01035 0.69 +0.1 228,443 - EX31_RS01035 0.69 -0.9 228,455 + EX31_RS01035 0.70 +0.1 228,455 + EX31_RS01035 0.70 +0.6 228,456 - EX31_RS01035 0.70 -1.0 228,456 - EX31_RS01035 0.70 -0.6 228,456 - EX31_RS01035 0.70 -0.3 228,456 - EX31_RS01035 0.70 -0.5 228,478 - EX31_RS01035 0.73 +0.1 228,478 - EX31_RS01035 0.73 -0.3 228,518 + EX31_RS01035 0.78 +0.3 228,519 - EX31_RS01035 0.78 -0.1 228,535 + EX31_RS01035 0.80 +1.9 228,535 + EX31_RS01035 0.80 -1.0 228,535 + EX31_RS01035 0.80 +1.1 228,535 + EX31_RS01035 0.80 +0.6 228,535 + EX31_RS01035 0.80 +0.7 228,535 + EX31_RS01035 0.80 -1.2 228,535 + EX31_RS01035 0.80 +0.7 228,535 + EX31_RS01035 0.80 +0.1 228,535 + EX31_RS01035 0.80 +0.3 228,536 - EX31_RS01035 0.80 +0.6 228,536 - EX31_RS01035 0.80 -0.5 228,536 - EX31_RS01035 0.80 +0.1 228,536 - EX31_RS01035 0.80 -0.3 228,536 - EX31_RS01035 0.80 -0.0 228,536 - EX31_RS01035 0.80 +0.3 228,536 - EX31_RS01035 0.80 +0.3 228,536 - EX31_RS01035 0.80 -0.1 228,536 - EX31_RS01035 0.80 +0.1 228,536 - EX31_RS01035 0.80 +1.2 228,536 - EX31_RS01035 0.80 -1.2 228,536 - EX31_RS01035 0.80 -0.1 228,536 - EX31_RS01035 0.80 +0.8 228,654 + +0.6 228,655 - -1.2 228,689 - +0.6 228,689 - -0.2 228,696 - +0.5 228,696 - +0.4 228,696 - +0.8 228,735 + -0.4 228,741 + +0.2 228,741 + -0.5 228,741 + +0.6 228,742 - -0.0 228,742 - -0.2 228,742 - -0.1 228,743 + +0.5 228,743 + -0.4 228,743 + +0.4 228,805 + +0.6 228,805 + +1.4 228,805 + -0.2 228,806 - -0.7 228,868 + -0.5 228,869 - -1.3 228,869 - +0.1 228,874 - -0.2 229,024 + EX31_RS01040 0.20 -0.6 229,024 + EX31_RS01040 0.20 -0.7 229,026 + EX31_RS01040 0.20 -2.2 229,026 + EX31_RS01040 0.20 -0.6 229,027 - EX31_RS01040 0.20 -1.1 229,027 - EX31_RS01040 0.20 +0.3 229,027 - EX31_RS01040 0.20 -0.9 229,027 - EX31_RS01040 0.20 -1.1 229,087 + EX31_RS01040 0.27 -0.4 229,363 + EX31_RS01040 0.58 -0.3 229,364 - EX31_RS01040 0.58 -0.8 229,381 + EX31_RS01040 0.60 +0.4 229,382 - EX31_RS01040 0.60 +0.5 229,437 - EX31_RS01040 0.66 +0.6 229,489 + EX31_RS01040 0.72 -1.1 229,627 + EX31_RS01040 0.88 -0.1 229,671 + -1.6 229,682 - -0.2 229,777 + +0.1 229,777 + +0.4 229,778 - -2.1 229,778 - +0.4 229,778 - +0.3 229,786 + +0.5 229,786 + +1.9 229,786 + +0.8 229,809 + EX31_RS01045 0.15 -0.2 229,810 - EX31_RS01045 0.15 +0.4 229,822 - EX31_RS01045 0.18 -1.7 229,833 + EX31_RS01045 0.21 -1.4 229,844 + EX31_RS01045 0.23 -1.0 229,845 - EX31_RS01045 0.24 +1.1 229,887 + EX31_RS01045 0.34 +0.5 229,887 + EX31_RS01045 0.34 -1.5 229,887 + EX31_RS01045 0.34 +0.2 229,888 - EX31_RS01045 0.35 +0.4 229,888 - EX31_RS01045 0.35 +0.4 229,888 - EX31_RS01045 0.35 +0.5 229,893 + EX31_RS01045 0.36 -0.8 229,894 - EX31_RS01045 0.36 -1.8 229,894 - EX31_RS01045 0.36 +0.0 230,230 + -0.2 230,251 - +0.0 230,269 + +0.5 230,305 + +1.3 230,347 + +0.1 230,348 - +0.0 230,511 - EX31_RS01050 0.23 -0.5 230,516 + EX31_RS01050 0.23 -0.2 230,516 + EX31_RS01050 0.23 +0.3 230,516 + EX31_RS01050 0.23 +0.2 230,516 + EX31_RS01050 0.23 +0.1 230,516 + EX31_RS01050 0.23 -0.6 230,516 + EX31_RS01050 0.23 +0.3 230,516 + EX31_RS01050 0.23 -0.1 230,516 + EX31_RS01050 0.23 -1.3 230,517 - EX31_RS01050 0.23 -0.3 230,517 - EX31_RS01050 0.23 -0.9 230,517 - EX31_RS01050 0.23 +0.7 230,517 - EX31_RS01050 0.23 -1.4 230,517 - EX31_RS01050 0.23 -0.1 230,517 - EX31_RS01050 0.23 -0.8 230,517 - EX31_RS01050 0.23 +0.6 230,517 - EX31_RS01050 0.23 +0.3 230,517 - EX31_RS01050 0.23 -0.3 230,517 - EX31_RS01050 0.23 -1.5 230,517 - EX31_RS01050 0.23 -0.6 230,517 - EX31_RS01050 0.23 -2.5 230,517 - EX31_RS01050 0.23 -0.8 230,518 + EX31_RS01050 0.23 -0.2 230,519 - EX31_RS01050 0.23 +0.4 230,549 + EX31_RS01050 0.26 +0.5 230,582 - EX31_RS01050 0.30 -0.6 230,664 - EX31_RS01050 0.38 -0.6
Or see this region's nucleotide sequence