Strain Fitness in Rahnella sp. WP5 around EX31_RS00760

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS00755 and EX31_RS00760 are separated by 66 nucleotidesEX31_RS00760 and EX31_RS00765 are separated by 4 nucleotidesEX31_RS00765 and EX31_RS00770 are separated by 191 nucleotides EX31_RS00755: EX31_RS00755 - ABC transporter substrate-binding protein, at 164,246 to 165,352 _RS00755 EX31_RS00760: EX31_RS00760 - glutathione S-transferase, at 165,419 to 166,021 _RS00760 EX31_RS00765: EX31_RS00765 - alpha/beta hydrolase, at 166,026 to 166,787 _RS00765 EX31_RS00770: EX31_RS00770 - LysR family transcriptional regulator, at 166,979 to 167,875 _RS00770 Position (kb) 165 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 164.434 kb on + strand, within EX31_RS00755at 164.434 kb on + strand, within EX31_RS00755at 164.443 kb on + strand, within EX31_RS00755at 164.488 kb on + strand, within EX31_RS00755at 164.488 kb on + strand, within EX31_RS00755at 164.488 kb on + strand, within EX31_RS00755at 164.489 kb on - strand, within EX31_RS00755at 164.489 kb on - strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.492 kb on + strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.493 kb on - strand, within EX31_RS00755at 164.495 kb on - strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.497 kb on + strand, within EX31_RS00755at 164.498 kb on - strand, within EX31_RS00755at 164.498 kb on - strand, within EX31_RS00755at 164.615 kb on + strand, within EX31_RS00755at 164.630 kb on + strand, within EX31_RS00755at 164.659 kb on + strand, within EX31_RS00755at 164.681 kb on + strand, within EX31_RS00755at 164.681 kb on + strand, within EX31_RS00755at 164.681 kb on + strand, within EX31_RS00755at 164.682 kb on - strand, within EX31_RS00755at 164.682 kb on - strand, within EX31_RS00755at 164.725 kb on + strand, within EX31_RS00755at 164.733 kb on + strand, within EX31_RS00755at 164.736 kb on + strand, within EX31_RS00755at 164.845 kb on + strand, within EX31_RS00755at 164.884 kb on + strand, within EX31_RS00755at 164.884 kb on + strand, within EX31_RS00755at 164.888 kb on + strand, within EX31_RS00755at 164.888 kb on + strand, within EX31_RS00755at 164.888 kb on + strand, within EX31_RS00755at 164.889 kb on - strand, within EX31_RS00755at 165.037 kb on + strand, within EX31_RS00755at 165.037 kb on + strand, within EX31_RS00755at 165.038 kb on - strand, within EX31_RS00755at 165.171 kb on - strand, within EX31_RS00755at 165.281 kb on + strandat 165.281 kb on + strandat 165.282 kb on - strandat 165.416 kb on + strandat 165.416 kb on + strandat 165.416 kb on + strandat 165.417 kb on - strandat 165.417 kb on - strandat 165.417 kb on - strandat 165.420 kb on + strandat 165.420 kb on + strandat 165.420 kb on + strandat 165.421 kb on - strandat 165.508 kb on + strand, within EX31_RS00760at 165.509 kb on - strand, within EX31_RS00760at 165.529 kb on + strand, within EX31_RS00760at 165.573 kb on - strand, within EX31_RS00760at 165.575 kb on - strand, within EX31_RS00760at 165.746 kb on + strand, within EX31_RS00760at 165.746 kb on + strand, within EX31_RS00760at 165.747 kb on - strand, within EX31_RS00760at 165.817 kb on - strand, within EX31_RS00760at 165.845 kb on + strand, within EX31_RS00760at 165.865 kb on + strand, within EX31_RS00760at 165.974 kb on - strandat 166.022 kb on - strandat 166.022 kb on - strandat 166.022 kb on - strandat 166.022 kb on - strandat 166.028 kb on - strandat 166.117 kb on + strand, within EX31_RS00765at 166.117 kb on + strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.118 kb on - strand, within EX31_RS00765at 166.121 kb on + strand, within EX31_RS00765at 166.121 kb on + strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.122 kb on - strand, within EX31_RS00765at 166.256 kb on - strand, within EX31_RS00765at 166.256 kb on - strand, within EX31_RS00765at 166.266 kb on - strand, within EX31_RS00765at 166.267 kb on + strand, within EX31_RS00765at 166.267 kb on + strand, within EX31_RS00765at 166.268 kb on - strand, within EX31_RS00765at 166.288 kb on + strand, within EX31_RS00765at 166.331 kb on - strand, within EX31_RS00765at 166.403 kb on + strand, within EX31_RS00765at 166.403 kb on + strand, within EX31_RS00765at 166.403 kb on + strand, within EX31_RS00765at 166.403 kb on + strand, within EX31_RS00765at 166.403 kb on + strand, within EX31_RS00765at 166.404 kb on - strand, within EX31_RS00765at 166.404 kb on - strand, within EX31_RS00765at 166.404 kb on - strand, within EX31_RS00765at 166.404 kb on - strand, within EX31_RS00765at 166.404 kb on - strand, within EX31_RS00765at 166.432 kb on + strand, within EX31_RS00765at 166.432 kb on + strand, within EX31_RS00765at 166.466 kb on + strand, within EX31_RS00765at 166.466 kb on + strand, within EX31_RS00765at 166.466 kb on + strand, within EX31_RS00765at 166.467 kb on - strand, within EX31_RS00765at 166.467 kb on - strand, within EX31_RS00765at 166.487 kb on - strand, within EX31_RS00765at 166.487 kb on - strand, within EX31_RS00765at 166.699 kb on + strand, within EX31_RS00765at 166.877 kb on + strandat 166.877 kb on + strandat 166.877 kb on + strandat 166.878 kb on - strandat 166.972 kb on + strandat 166.975 kb on + strandat 166.975 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
remove
164,434 + EX31_RS00755 0.17 +0.2
164,434 + EX31_RS00755 0.17 -0.0
164,443 + EX31_RS00755 0.18 +0.1
164,488 + EX31_RS00755 0.22 +0.9
164,488 + EX31_RS00755 0.22 +0.4
164,488 + EX31_RS00755 0.22 -1.3
164,489 - EX31_RS00755 0.22 -0.8
164,489 - EX31_RS00755 0.22 +1.0
164,492 + EX31_RS00755 0.22 +0.4
164,492 + EX31_RS00755 0.22 -1.4
164,492 + EX31_RS00755 0.22 -0.3
164,492 + EX31_RS00755 0.22 -0.5
164,492 + EX31_RS00755 0.22 -0.8
164,492 + EX31_RS00755 0.22 +0.5
164,492 + EX31_RS00755 0.22 +0.2
164,492 + EX31_RS00755 0.22 +0.0
164,492 + EX31_RS00755 0.22 +0.1
164,492 + EX31_RS00755 0.22 +0.5
164,493 - EX31_RS00755 0.22 +0.9
164,493 - EX31_RS00755 0.22 +0.7
164,493 - EX31_RS00755 0.22 -0.8
164,493 - EX31_RS00755 0.22 -1.4
164,493 - EX31_RS00755 0.22 +0.3
164,493 - EX31_RS00755 0.22 +1.8
164,493 - EX31_RS00755 0.22 -0.8
164,493 - EX31_RS00755 0.22 +0.6
164,493 - EX31_RS00755 0.22 +2.3
164,495 - EX31_RS00755 0.22 -0.0
164,497 + EX31_RS00755 0.23 +1.1
164,497 + EX31_RS00755 0.23 +0.2
164,497 + EX31_RS00755 0.23 +0.3
164,497 + EX31_RS00755 0.23 -0.2
164,497 + EX31_RS00755 0.23 -0.5
164,497 + EX31_RS00755 0.23 -2.1
164,497 + EX31_RS00755 0.23 +0.1
164,497 + EX31_RS00755 0.23 +1.0
164,497 + EX31_RS00755 0.23 +0.5
164,498 - EX31_RS00755 0.23 +0.1
164,498 - EX31_RS00755 0.23 +0.7
164,615 + EX31_RS00755 0.33 +0.6
164,630 + EX31_RS00755 0.35 +0.9
164,659 + EX31_RS00755 0.37 +0.3
164,681 + EX31_RS00755 0.39 -0.8
164,681 + EX31_RS00755 0.39 +0.4
164,681 + EX31_RS00755 0.39 +0.5
164,682 - EX31_RS00755 0.39 -1.4
164,682 - EX31_RS00755 0.39 +1.3
164,725 + EX31_RS00755 0.43 +0.7
164,733 + EX31_RS00755 0.44 +0.4
164,736 + EX31_RS00755 0.44 +0.6
164,845 + EX31_RS00755 0.54 -0.0
164,884 + EX31_RS00755 0.58 -0.3
164,884 + EX31_RS00755 0.58 -0.4
164,888 + EX31_RS00755 0.58 -1.4
164,888 + EX31_RS00755 0.58 +1.4
164,888 + EX31_RS00755 0.58 +1.6
164,889 - EX31_RS00755 0.58 -1.5
165,037 + EX31_RS00755 0.71 -0.3
165,037 + EX31_RS00755 0.71 +0.5
165,038 - EX31_RS00755 0.72 -1.8
165,171 - EX31_RS00755 0.84 -0.1
165,281 + -0.3
165,281 + +0.0
165,282 - +0.2
165,416 + +0.8
165,416 + -0.8
165,416 + -0.6
165,417 - +0.1
165,417 - -0.1
165,417 - -0.2
165,420 + +0.1
165,420 + -1.2
165,420 + +0.2
165,421 - +0.5
165,508 + EX31_RS00760 0.15 -0.4
165,509 - EX31_RS00760 0.15 +0.0
165,529 + EX31_RS00760 0.18 -2.1
165,573 - EX31_RS00760 0.26 +0.3
165,575 - EX31_RS00760 0.26 -0.3
165,746 + EX31_RS00760 0.54 +0.5
165,746 + EX31_RS00760 0.54 -0.4
165,747 - EX31_RS00760 0.54 -3.3
165,817 - EX31_RS00760 0.66 -0.1
165,845 + EX31_RS00760 0.71 -1.7
165,865 + EX31_RS00760 0.74 -0.6
165,974 - +0.7
166,022 - +0.1
166,022 - -0.8
166,022 - -0.3
166,022 - +0.1
166,028 - -1.7
166,117 + EX31_RS00765 0.12 +0.4
166,117 + EX31_RS00765 0.12 -0.1
166,118 - EX31_RS00765 0.12 -0.2
166,118 - EX31_RS00765 0.12 +0.6
166,118 - EX31_RS00765 0.12 -0.5
166,118 - EX31_RS00765 0.12 +0.9
166,118 - EX31_RS00765 0.12 +1.2
166,118 - EX31_RS00765 0.12 +0.8
166,118 - EX31_RS00765 0.12 -0.2
166,118 - EX31_RS00765 0.12 +0.7
166,118 - EX31_RS00765 0.12 +0.2
166,118 - EX31_RS00765 0.12 +0.7
166,118 - EX31_RS00765 0.12 -0.1
166,121 + EX31_RS00765 0.12 -0.7
166,121 + EX31_RS00765 0.12 +0.9
166,122 - EX31_RS00765 0.13 +1.0
166,122 - EX31_RS00765 0.13 -1.4
166,122 - EX31_RS00765 0.13 +0.1
166,122 - EX31_RS00765 0.13 -0.6
166,122 - EX31_RS00765 0.13 +0.7
166,122 - EX31_RS00765 0.13 +0.8
166,122 - EX31_RS00765 0.13 -2.0
166,122 - EX31_RS00765 0.13 -0.5
166,122 - EX31_RS00765 0.13 -1.2
166,256 - EX31_RS00765 0.30 +0.5
166,256 - EX31_RS00765 0.30 -0.4
166,266 - EX31_RS00765 0.31 -0.1
166,267 + EX31_RS00765 0.32 -0.1
166,267 + EX31_RS00765 0.32 -1.2
166,268 - EX31_RS00765 0.32 +0.4
166,288 + EX31_RS00765 0.34 +1.5
166,331 - EX31_RS00765 0.40 +0.9
166,403 + EX31_RS00765 0.49 +0.0
166,403 + EX31_RS00765 0.49 -0.4
166,403 + EX31_RS00765 0.49 -0.0
166,403 + EX31_RS00765 0.49 +0.8
166,403 + EX31_RS00765 0.49 -1.5
166,404 - EX31_RS00765 0.50 +0.7
166,404 - EX31_RS00765 0.50 +0.6
166,404 - EX31_RS00765 0.50 +0.6
166,404 - EX31_RS00765 0.50 -0.2
166,404 - EX31_RS00765 0.50 -0.5
166,432 + EX31_RS00765 0.53 +0.8
166,432 + EX31_RS00765 0.53 +0.3
166,466 + EX31_RS00765 0.58 +0.7
166,466 + EX31_RS00765 0.58 -1.1
166,466 + EX31_RS00765 0.58 +1.1
166,467 - EX31_RS00765 0.58 +0.0
166,467 - EX31_RS00765 0.58 +0.6
166,487 - EX31_RS00765 0.60 -0.4
166,487 - EX31_RS00765 0.60 -0.1
166,699 + EX31_RS00765 0.88 -0.1
166,877 + +0.1
166,877 + +0.9
166,877 + -0.2
166,878 - -0.2
166,972 + -0.1
166,975 + -0.3
166,975 + -1.0

Or see this region's nucleotide sequence