Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00105 and EX31_RS00110 are separated by 23 nucleotides EX31_RS00110 and EX31_RS00115 are separated by 88 nucleotides EX31_RS00115 and EX31_RS00120 overlap by 8 nucleotides
EX31_RS00105: EX31_RS00105 - ABC transporter permease, at 23,201 to 24,466
_RS00105
EX31_RS00110: EX31_RS00110 - ABC transporter permease, at 24,490 to 25,317
_RS00110
EX31_RS00115: EX31_RS00115 - SDR family oxidoreductase, at 25,406 to 26,149
_RS00115
EX31_RS00120: EX31_RS00120 - phosphotransferase, at 26,142 to 27,191
_RS00120
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 23.547 kb on + strand, within EX31_RS00105 at 23.592 kb on + strand, within EX31_RS00105 at 23.592 kb on + strand, within EX31_RS00105 at 23.593 kb on - strand, within EX31_RS00105 at 23.593 kb on - strand, within EX31_RS00105 at 23.593 kb on - strand, within EX31_RS00105 at 23.593 kb on - strand, within EX31_RS00105 at 23.714 kb on + strand, within EX31_RS00105 at 23.714 kb on + strand, within EX31_RS00105 at 23.719 kb on - strand, within EX31_RS00105 at 23.742 kb on + strand, within EX31_RS00105 at 23.743 kb on - strand, within EX31_RS00105 at 23.929 kb on - strand, within EX31_RS00105 at 24.071 kb on + strand, within EX31_RS00105 at 24.071 kb on + strand, within EX31_RS00105 at 24.071 kb on + strand, within EX31_RS00105 at 24.071 kb on + strand, within EX31_RS00105 at 24.072 kb on - strand, within EX31_RS00105 at 24.072 kb on - strand, within EX31_RS00105 at 24.073 kb on + strand, within EX31_RS00105 at 24.073 kb on + strand, within EX31_RS00105 at 24.074 kb on - strand, within EX31_RS00105 at 24.074 kb on - strand, within EX31_RS00105 at 24.117 kb on + strand, within EX31_RS00105 at 24.117 kb on + strand, within EX31_RS00105 at 24.117 kb on + strand, within EX31_RS00105 at 24.117 kb on + strand, within EX31_RS00105 at 24.118 kb on - strand, within EX31_RS00105 at 24.118 kb on - strand, within EX31_RS00105 at 24.118 kb on - strand, within EX31_RS00105 at 24.119 kb on + strand, within EX31_RS00105 at 24.120 kb on - strand, within EX31_RS00105 at 24.120 kb on - strand, within EX31_RS00105 at 24.145 kb on + strand, within EX31_RS00105 at 24.146 kb on - strand, within EX31_RS00105 at 24.149 kb on + strand, within EX31_RS00105 at 24.149 kb on + strand, within EX31_RS00105 at 24.150 kb on - strand, within EX31_RS00105 at 24.150 kb on - strand, within EX31_RS00105 at 24.206 kb on + strand, within EX31_RS00105 at 24.206 kb on + strand, within EX31_RS00105 at 24.206 kb on + strand, within EX31_RS00105 at 24.206 kb on + strand, within EX31_RS00105 at 24.206 kb on + strand, within EX31_RS00105 at 24.207 kb on - strand, within EX31_RS00105 at 24.207 kb on - strand, within EX31_RS00105 at 24.207 kb on - strand, within EX31_RS00105 at 24.207 kb on - strand, within EX31_RS00105 at 24.221 kb on + strand, within EX31_RS00105 at 24.272 kb on + strand, within EX31_RS00105 at 24.275 kb on + strand, within EX31_RS00105 at 24.275 kb on + strand, within EX31_RS00105 at 24.276 kb on - strand, within EX31_RS00105 at 24.276 kb on - strand, within EX31_RS00105 at 24.276 kb on - strand, within EX31_RS00105 at 24.346 kb on + strand at 24.346 kb on + strand at 24.346 kb on + strand at 24.346 kb on + strand at 24.413 kb on + strand at 24.413 kb on + strand at 24.413 kb on + strand at 24.413 kb on + strand at 24.414 kb on - strand at 24.422 kb on + strand at 24.422 kb on + strand at 24.423 kb on - strand at 24.442 kb on + strand at 24.659 kb on - strand, within EX31_RS00110 at 24.901 kb on + strand, within EX31_RS00110 at 24.901 kb on + strand, within EX31_RS00110 at 24.901 kb on + strand, within EX31_RS00110 at 24.902 kb on - strand, within EX31_RS00110 at 25.034 kb on + strand, within EX31_RS00110 at 25.047 kb on + strand, within EX31_RS00110 at 25.047 kb on + strand, within EX31_RS00110 at 25.130 kb on + strand, within EX31_RS00110 at 25.341 kb on - strand at 25.570 kb on + strand, within EX31_RS00115 at 25.571 kb on - strand, within EX31_RS00115 at 25.672 kb on + strand, within EX31_RS00115 at 25.673 kb on - strand, within EX31_RS00115 at 25.830 kb on + strand, within EX31_RS00115 at 25.877 kb on + strand, within EX31_RS00115 at 25.877 kb on + strand, within EX31_RS00115 at 25.877 kb on + strand, within EX31_RS00115 at 25.878 kb on - strand, within EX31_RS00115 at 25.878 kb on - strand, within EX31_RS00115 at 25.888 kb on + strand, within EX31_RS00115 at 25.954 kb on - strand, within EX31_RS00115 at 25.981 kb on + strand, within EX31_RS00115 at 26.102 kb on + strand at 26.102 kb on + strand at 26.102 kb on + strand at 26.103 kb on - strand at 26.103 kb on - strand at 26.121 kb on + strand at 26.121 kb on + strand at 26.121 kb on + strand at 26.122 kb on - strand at 26.122 kb on - strand at 26.208 kb on - strand at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.305 kb on - strand, within EX31_RS00120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 23,547 + EX31_RS00105 0.27 -0.1 23,592 + EX31_RS00105 0.31 +0.4 23,592 + EX31_RS00105 0.31 +0.2 23,593 - EX31_RS00105 0.31 -0.8 23,593 - EX31_RS00105 0.31 -0.5 23,593 - EX31_RS00105 0.31 -0.9 23,593 - EX31_RS00105 0.31 +0.1 23,714 + EX31_RS00105 0.41 -0.1 23,714 + EX31_RS00105 0.41 -1.2 23,719 - EX31_RS00105 0.41 +0.3 23,742 + EX31_RS00105 0.43 +0.9 23,743 - EX31_RS00105 0.43 -0.2 23,929 - EX31_RS00105 0.58 +1.4 24,071 + EX31_RS00105 0.69 -3.1 24,071 + EX31_RS00105 0.69 +0.4 24,071 + EX31_RS00105 0.69 -0.8 24,071 + EX31_RS00105 0.69 +0.4 24,072 - EX31_RS00105 0.69 +2.6 24,072 - EX31_RS00105 0.69 -0.0 24,073 + EX31_RS00105 0.69 -0.9 24,073 + EX31_RS00105 0.69 -0.5 24,074 - EX31_RS00105 0.69 +1.1 24,074 - EX31_RS00105 0.69 +0.3 24,117 + EX31_RS00105 0.72 +1.4 24,117 + EX31_RS00105 0.72 +0.9 24,117 + EX31_RS00105 0.72 +0.4 24,117 + EX31_RS00105 0.72 +0.2 24,118 - EX31_RS00105 0.72 +0.3 24,118 - EX31_RS00105 0.72 +0.6 24,118 - EX31_RS00105 0.72 -1.2 24,119 + EX31_RS00105 0.73 -1.6 24,120 - EX31_RS00105 0.73 +0.3 24,120 - EX31_RS00105 0.73 -2.1 24,145 + EX31_RS00105 0.75 +0.1 24,146 - EX31_RS00105 0.75 +1.8 24,149 + EX31_RS00105 0.75 +0.5 24,149 + EX31_RS00105 0.75 +0.5 24,150 - EX31_RS00105 0.75 -0.2 24,150 - EX31_RS00105 0.75 +0.1 24,206 + EX31_RS00105 0.79 -0.6 24,206 + EX31_RS00105 0.79 -0.9 24,206 + EX31_RS00105 0.79 +0.8 24,206 + EX31_RS00105 0.79 +0.3 24,206 + EX31_RS00105 0.79 +0.1 24,207 - EX31_RS00105 0.79 -0.3 24,207 - EX31_RS00105 0.79 -2.0 24,207 - EX31_RS00105 0.79 +1.6 24,207 - EX31_RS00105 0.79 +1.1 24,221 + EX31_RS00105 0.81 +0.1 24,272 + EX31_RS00105 0.85 -0.1 24,275 + EX31_RS00105 0.85 -0.1 24,275 + EX31_RS00105 0.85 -0.9 24,276 - EX31_RS00105 0.85 +0.1 24,276 - EX31_RS00105 0.85 +0.2 24,276 - EX31_RS00105 0.85 -0.0 24,346 + -0.9 24,346 + +0.9 24,346 + -0.1 24,346 + +0.4 24,413 + -1.2 24,413 + -1.5 24,413 + +1.0 24,413 + +0.5 24,414 - -2.0 24,422 + -1.2 24,422 + -0.1 24,423 - -0.1 24,442 + -1.0 24,659 - EX31_RS00110 0.20 +0.8 24,901 + EX31_RS00110 0.50 +1.3 24,901 + EX31_RS00110 0.50 -0.2 24,901 + EX31_RS00110 0.50 -1.5 24,902 - EX31_RS00110 0.50 -1.0 25,034 + EX31_RS00110 0.66 -0.8 25,047 + EX31_RS00110 0.67 -1.1 25,047 + EX31_RS00110 0.67 -0.4 25,130 + EX31_RS00110 0.77 -1.2 25,341 - +1.2 25,570 + EX31_RS00115 0.22 -0.6 25,571 - EX31_RS00115 0.22 -0.5 25,672 + EX31_RS00115 0.36 +0.3 25,673 - EX31_RS00115 0.36 -1.1 25,830 + EX31_RS00115 0.57 -0.5 25,877 + EX31_RS00115 0.63 -0.2 25,877 + EX31_RS00115 0.63 +0.2 25,877 + EX31_RS00115 0.63 +0.1 25,878 - EX31_RS00115 0.63 +1.1 25,878 - EX31_RS00115 0.63 +0.3 25,888 + EX31_RS00115 0.65 -0.1 25,954 - EX31_RS00115 0.74 -0.3 25,981 + EX31_RS00115 0.77 -0.4 26,102 + +0.1 26,102 + -0.5 26,102 + +0.2 26,103 - +1.7 26,103 - +0.5 26,121 + -0.2 26,121 + +0.5 26,121 + -1.0 26,122 - -0.5 26,122 - -1.1 26,208 - -0.1 26,304 + EX31_RS00120 0.15 -0.2 26,304 + EX31_RS00120 0.15 -0.8 26,304 + EX31_RS00120 0.15 -1.6 26,304 + EX31_RS00120 0.15 -0.0 26,304 + EX31_RS00120 0.15 +1.0 26,305 - EX31_RS00120 0.16 -0.1
Or see this region's nucleotide sequence