Strain Fitness in Rahnella sp. WP5 around EX31_RS00035

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00030 and EX31_RS00035 are separated by 6 nucleotidesEX31_RS00035 and EX31_RS00040 are separated by 158 nucleotides EX31_RS00030: EX31_RS00030 - PTS transporter subunit EIIC, at 3,547 to 4,947 _RS00030 EX31_RS00035: EX31_RS00035 - fumarylacetoacetate hydrolase family protein, at 4,954 to 5,826 _RS00035 EX31_RS00040: EX31_RS00040 - LysR family transcriptional regulator, at 5,985 to 6,908 _RS00040 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1at 4.060 kb on + strand, within EX31_RS00030at 4.093 kb on + strand, within EX31_RS00030at 4.160 kb on - strand, within EX31_RS00030at 4.165 kb on - strand, within EX31_RS00030at 4.243 kb on + strand, within EX31_RS00030at 4.243 kb on + strand, within EX31_RS00030at 4.243 kb on + strand, within EX31_RS00030at 4.244 kb on - strand, within EX31_RS00030at 4.263 kb on + strand, within EX31_RS00030at 4.264 kb on - strand, within EX31_RS00030at 4.297 kb on - strand, within EX31_RS00030at 4.363 kb on + strand, within EX31_RS00030at 4.363 kb on + strand, within EX31_RS00030at 4.364 kb on - strand, within EX31_RS00030at 4.364 kb on - strand, within EX31_RS00030at 4.364 kb on - strand, within EX31_RS00030at 4.372 kb on - strand, within EX31_RS00030at 4.599 kb on + strand, within EX31_RS00030at 4.772 kb on - strand, within EX31_RS00030at 4.777 kb on + strand, within EX31_RS00030at 4.778 kb on - strand, within EX31_RS00030at 4.779 kb on + strand, within EX31_RS00030at 4.811 kb on - strandat 4.811 kb on - strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.848 kb on - strandat 4.848 kb on - strandat 4.872 kb on + strandat 4.873 kb on - strandat 4.883 kb on - strandat 4.977 kb on + strandat 4.978 kb on - strandat 4.978 kb on - strandat 5.156 kb on + strand, within EX31_RS00035at 5.156 kb on + strand, within EX31_RS00035at 5.157 kb on - strand, within EX31_RS00035at 5.187 kb on + strand, within EX31_RS00035at 5.325 kb on + strand, within EX31_RS00035at 5.326 kb on - strand, within EX31_RS00035at 5.327 kb on + strand, within EX31_RS00035at 5.328 kb on - strand, within EX31_RS00035at 5.334 kb on + strand, within EX31_RS00035at 5.334 kb on + strand, within EX31_RS00035at 5.334 kb on + strand, within EX31_RS00035at 5.334 kb on + strand, within EX31_RS00035at 5.335 kb on - strand, within EX31_RS00035at 5.335 kb on - strand, within EX31_RS00035at 5.335 kb on - strand, within EX31_RS00035at 5.335 kb on - strand, within EX31_RS00035at 5.335 kb on - strand, within EX31_RS00035at 5.335 kb on - strand, within EX31_RS00035at 5.351 kb on - strand, within EX31_RS00035at 5.366 kb on + strand, within EX31_RS00035at 5.367 kb on - strand, within EX31_RS00035at 5.367 kb on - strand, within EX31_RS00035at 5.367 kb on - strand, within EX31_RS00035at 5.367 kb on - strand, within EX31_RS00035at 5.413 kb on - strand, within EX31_RS00035at 5.413 kb on - strand, within EX31_RS00035at 5.457 kb on - strand, within EX31_RS00035at 5.457 kb on - strand, within EX31_RS00035at 5.485 kb on - strand, within EX31_RS00035at 5.582 kb on + strand, within EX31_RS00035at 5.582 kb on + strand, within EX31_RS00035at 5.582 kb on + strand, within EX31_RS00035at 5.583 kb on - strand, within EX31_RS00035at 5.675 kb on + strand, within EX31_RS00035at 5.675 kb on + strand, within EX31_RS00035at 5.675 kb on + strand, within EX31_RS00035at 5.675 kb on + strand, within EX31_RS00035at 5.676 kb on - strand, within EX31_RS00035at 5.721 kb on + strand, within EX31_RS00035at 5.775 kb on + strandat 5.799 kb on + strandat 5.800 kb on - strandat 5.836 kb on + strandat 5.836 kb on + strandat 5.836 kb on + strandat 5.837 kb on - strandat 5.837 kb on - strandat 5.837 kb on - strandat 5.844 kb on + strandat 5.844 kb on + strandat 5.845 kb on - strandat 5.920 kb on + strandat 5.945 kb on + strandat 6.005 kb on - strandat 6.065 kb on + strandat 6.067 kb on + strandat 6.067 kb on + strandat 6.180 kb on + strand, within EX31_RS00040at 6.180 kb on + strand, within EX31_RS00040at 6.210 kb on + strand, within EX31_RS00040at 6.210 kb on + strand, within EX31_RS00040at 6.211 kb on - strand, within EX31_RS00040at 6.438 kb on + strand, within EX31_RS00040at 6.438 kb on + strand, within EX31_RS00040at 6.438 kb on + strand, within EX31_RS00040at 6.438 kb on + strand, within EX31_RS00040at 6.438 kb on + strand, within EX31_RS00040at 6.438 kb on + strand, within EX31_RS00040at 6.439 kb on - strand, within EX31_RS00040at 6.716 kb on + strand, within EX31_RS00040at 6.772 kb on + strand, within EX31_RS00040at 6.772 kb on + strand, within EX31_RS00040at 6.772 kb on + strand, within EX31_RS00040at 6.773 kb on - strand, within EX31_RS00040

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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4,060 + EX31_RS00030 0.37 +0.7
4,093 + EX31_RS00030 0.39 -0.5
4,160 - EX31_RS00030 0.44 +0.6
4,165 - EX31_RS00030 0.44 -0.3
4,243 + EX31_RS00030 0.50 -2.0
4,243 + EX31_RS00030 0.50 +0.8
4,243 + EX31_RS00030 0.50 +0.6
4,244 - EX31_RS00030 0.50 -0.3
4,263 + EX31_RS00030 0.51 -1.2
4,264 - EX31_RS00030 0.51 -2.0
4,297 - EX31_RS00030 0.54 -0.1
4,363 + EX31_RS00030 0.58 +0.2
4,363 + EX31_RS00030 0.58 -0.7
4,364 - EX31_RS00030 0.58 -0.5
4,364 - EX31_RS00030 0.58 +0.9
4,364 - EX31_RS00030 0.58 +0.9
4,372 - EX31_RS00030 0.59 +1.0
4,599 + EX31_RS00030 0.75 -1.6
4,772 - EX31_RS00030 0.87 -1.3
4,777 + EX31_RS00030 0.88 -0.6
4,778 - EX31_RS00030 0.88 -1.3
4,779 + EX31_RS00030 0.88 -0.7
4,811 - +1.2
4,811 - -0.3
4,847 + +0.6
4,847 + +0.4
4,848 - +0.5
4,848 - -1.0
4,872 + -0.2
4,873 - -0.8
4,883 - -0.1
4,977 + +0.2
4,978 - +0.4
4,978 - -0.3
5,156 + EX31_RS00035 0.23 -0.8
5,156 + EX31_RS00035 0.23 -0.3
5,157 - EX31_RS00035 0.23 -1.6
5,187 + EX31_RS00035 0.27 +0.3
5,325 + EX31_RS00035 0.42 +0.2
5,326 - EX31_RS00035 0.43 -0.3
5,327 + EX31_RS00035 0.43 -0.2
5,328 - EX31_RS00035 0.43 -1.0
5,334 + EX31_RS00035 0.44 -0.4
5,334 + EX31_RS00035 0.44 +0.0
5,334 + EX31_RS00035 0.44 -1.1
5,334 + EX31_RS00035 0.44 -1.1
5,335 - EX31_RS00035 0.44 -1.2
5,335 - EX31_RS00035 0.44 -0.6
5,335 - EX31_RS00035 0.44 -1.0
5,335 - EX31_RS00035 0.44 +0.6
5,335 - EX31_RS00035 0.44 -0.9
5,335 - EX31_RS00035 0.44 -0.7
5,351 - EX31_RS00035 0.45 -0.2
5,366 + EX31_RS00035 0.47 -1.3
5,367 - EX31_RS00035 0.47 -0.6
5,367 - EX31_RS00035 0.47 -0.1
5,367 - EX31_RS00035 0.47 +0.2
5,367 - EX31_RS00035 0.47 -0.6
5,413 - EX31_RS00035 0.53 -0.4
5,413 - EX31_RS00035 0.53 +0.5
5,457 - EX31_RS00035 0.58 -0.8
5,457 - EX31_RS00035 0.58 -0.3
5,485 - EX31_RS00035 0.61 -2.5
5,582 + EX31_RS00035 0.72 -0.9
5,582 + EX31_RS00035 0.72 -0.9
5,582 + EX31_RS00035 0.72 +0.7
5,583 - EX31_RS00035 0.72 -0.1
5,675 + EX31_RS00035 0.83 -0.5
5,675 + EX31_RS00035 0.83 +0.1
5,675 + EX31_RS00035 0.83 +0.3
5,675 + EX31_RS00035 0.83 +0.6
5,676 - EX31_RS00035 0.83 -1.2
5,721 + EX31_RS00035 0.88 -0.2
5,775 + +0.1
5,799 + +0.8
5,800 - +0.8
5,836 + -3.0
5,836 + -1.9
5,836 + -0.9
5,837 - -0.3
5,837 - -0.7
5,837 - -0.4
5,844 + +0.1
5,844 + +0.3
5,845 - -3.3
5,920 + -1.4
5,945 + -1.3
6,005 - +0.7
6,065 + +0.1
6,067 + -1.7
6,067 + +0.5
6,180 + EX31_RS00040 0.21 +0.9
6,180 + EX31_RS00040 0.21 -0.1
6,210 + EX31_RS00040 0.24 -1.3
6,210 + EX31_RS00040 0.24 -1.1
6,211 - EX31_RS00040 0.24 +0.5
6,438 + EX31_RS00040 0.49 -0.3
6,438 + EX31_RS00040 0.49 +0.2
6,438 + EX31_RS00040 0.49 +0.1
6,438 + EX31_RS00040 0.49 -0.9
6,438 + EX31_RS00040 0.49 +0.6
6,438 + EX31_RS00040 0.49 +1.1
6,439 - EX31_RS00040 0.49 +0.4
6,716 + EX31_RS00040 0.79 +0.0
6,772 + EX31_RS00040 0.85 -0.1
6,772 + EX31_RS00040 0.85 -0.3
6,772 + EX31_RS00040 0.85 -0.1
6,773 - EX31_RS00040 0.85 -0.1

Or see this region's nucleotide sequence