Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24110 and EX31_RS24115 are separated by 371 nucleotides EX31_RS24115 and EX31_RS24120 are separated by 255 nucleotides EX31_RS24120 and EX31_RS24125 are separated by 227 nucleotides EX31_RS24125 and EX31_RS24130 are separated by 161 nucleotides
EX31_RS24110: EX31_RS24110 - D-serine/D-alanine/glycine transporter, at 594,609 to 596,003
_RS24110
EX31_RS24115: EX31_RS24115 - tRNA-Lys, at 596,375 to 596,450
_RS24115
EX31_RS24120: EX31_RS24120 - hypothetical protein, at 596,706 to 596,954
_RS24120
EX31_RS24125: EX31_RS24125 - hypothetical protein, at 597,182 to 597,601
_RS24125
EX31_RS24130: EX31_RS24130 - 2-isopropylmalate synthase, at 597,763 to 599,433
_RS24130
Position (kb) 596
597 Strain fitness (log2 ratio) -2
-1
0
1
2 at 595.808 kb on + strand, within EX31_RS24110 at 595.808 kb on + strand, within EX31_RS24110 at 595.826 kb on - strand, within EX31_RS24110 at 595.826 kb on - strand, within EX31_RS24110 at 595.877 kb on + strand at 595.923 kb on - strand at 596.008 kb on + strand at 596.064 kb on - strand at 596.135 kb on - strand at 596.137 kb on + strand at 596.137 kb on + strand at 596.138 kb on - strand at 596.140 kb on + strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.141 kb on - strand at 596.146 kb on + strand at 596.146 kb on + strand at 596.147 kb on - strand at 596.147 kb on - strand at 596.147 kb on - strand at 596.158 kb on + strand at 596.158 kb on + strand at 596.159 kb on - strand at 596.159 kb on - strand at 596.162 kb on - strand at 596.164 kb on - strand at 596.230 kb on + strand at 596.230 kb on + strand at 596.231 kb on - strand at 596.234 kb on + strand at 596.263 kb on + strand at 596.298 kb on - strand at 596.361 kb on + strand at 596.382 kb on + strand at 596.382 kb on + strand at 596.410 kb on + strand, within EX31_RS24115 at 596.410 kb on + strand, within EX31_RS24115 at 596.460 kb on + strand at 596.472 kb on + strand at 596.473 kb on - strand at 596.489 kb on + strand at 596.489 kb on + strand at 596.528 kb on - strand at 596.537 kb on + strand at 596.540 kb on + strand at 596.540 kb on + strand at 596.585 kb on + strand at 596.620 kb on + strand at 596.620 kb on + strand at 596.621 kb on - strand at 596.622 kb on + strand at 596.622 kb on + strand at 596.622 kb on + strand at 596.623 kb on - strand at 596.623 kb on - strand at 596.654 kb on + strand at 596.654 kb on + strand at 596.654 kb on + strand at 596.655 kb on - strand at 596.690 kb on + strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.691 kb on - strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.710 kb on + strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.711 kb on - strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.714 kb on + strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.715 kb on - strand at 596.724 kb on - strand at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.801 kb on + strand, within EX31_RS24120 at 596.802 kb on - strand, within EX31_RS24120 at 596.908 kb on + strand, within EX31_RS24120 at 596.908 kb on + strand, within EX31_RS24120 at 596.909 kb on - strand, within EX31_RS24120 at 596.916 kb on - strand, within EX31_RS24120 at 596.938 kb on - strand at 596.944 kb on + strand at 596.944 kb on + strand at 596.945 kb on - strand at 596.945 kb on - strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.950 kb on + strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.951 kb on - strand at 596.955 kb on - strand at 596.955 kb on - strand at 596.955 kb on - strand at 596.955 kb on - strand at 597.007 kb on + strand at 597.014 kb on + strand at 597.014 kb on + strand at 597.014 kb on + strand at 597.015 kb on - strand at 597.015 kb on - strand at 597.028 kb on + strand at 597.028 kb on + strand at 597.028 kb on + strand at 597.028 kb on + strand at 597.029 kb on - strand at 597.029 kb on - strand at 597.029 kb on - strand at 597.029 kb on - strand at 597.029 kb on - strand at 597.032 kb on - strand at 597.032 kb on - strand at 597.032 kb on - strand at 597.032 kb on - strand at 597.073 kb on + strand at 597.073 kb on + strand at 597.073 kb on + strand at 597.074 kb on - strand at 597.074 kb on - strand at 597.151 kb on - strand at 597.151 kb on - strand at 597.219 kb on + strand at 597.242 kb on + strand, within EX31_RS24125 at 597.242 kb on + strand, within EX31_RS24125 at 597.321 kb on + strand, within EX31_RS24125 at 597.330 kb on + strand, within EX31_RS24125 at 597.331 kb on - strand, within EX31_RS24125 at 597.375 kb on + strand, within EX31_RS24125 at 597.415 kb on + strand, within EX31_RS24125 at 597.422 kb on + strand, within EX31_RS24125 at 597.423 kb on - strand, within EX31_RS24125 at 597.423 kb on - strand, within EX31_RS24125 at 597.505 kb on + strand, within EX31_RS24125 at 597.523 kb on + strand, within EX31_RS24125 at 597.524 kb on - strand, within EX31_RS24125 at 597.529 kb on + strand, within EX31_RS24125 at 597.529 kb on + strand, within EX31_RS24125 at 597.529 kb on + strand, within EX31_RS24125 at 597.566 kb on + strand at 597.566 kb on + strand at 597.566 kb on + strand at 597.566 kb on + strand at 597.567 kb on - strand at 597.567 kb on - strand at 597.595 kb on + strand at 597.599 kb on + strand at 597.611 kb on + strand at 597.611 kb on + strand at 597.612 kb on - strand at 597.636 kb on + strand at 597.681 kb on + strand at 597.711 kb on - strand at 597.713 kb on + strand at 597.713 kb on + strand at 597.713 kb on + strand at 597.713 kb on + strand at 597.722 kb on - strand at 597.731 kb on + strand at 597.763 kb on - strand at 597.768 kb on - strand at 597.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 595,808 + EX31_RS24110 0.86 -0.8 595,808 + EX31_RS24110 0.86 -0.9 595,826 - EX31_RS24110 0.87 +0.2 595,826 - EX31_RS24110 0.87 +0.2 595,877 + -2.4 595,923 - +0.8 596,008 + -0.2 596,064 - +1.2 596,135 - -0.0 596,137 + +0.4 596,137 + -0.2 596,138 - -1.3 596,140 + -0.9 596,141 - +0.3 596,141 - +0.3 596,141 - +0.8 596,141 - +0.1 596,141 - -0.2 596,146 + +0.5 596,146 + +0.4 596,147 - +0.8 596,147 - +0.6 596,147 - +0.9 596,158 + -1.9 596,158 + -0.4 596,159 - +0.8 596,159 - +1.4 596,162 - -1.6 596,164 - -0.3 596,230 + -1.7 596,230 + +0.3 596,231 - +1.3 596,234 + -0.3 596,263 + -0.2 596,298 - -0.7 596,361 + -0.0 596,382 + -0.1 596,382 + +1.0 596,410 + EX31_RS24115 0.46 -1.0 596,410 + EX31_RS24115 0.46 +0.2 596,460 + +1.2 596,472 + -0.3 596,473 - +0.0 596,489 + +0.8 596,489 + +0.9 596,528 - +0.1 596,537 + +0.7 596,540 + -0.4 596,540 + -0.6 596,585 + +2.3 596,620 + -0.1 596,620 + +0.4 596,621 - +1.7 596,622 + +2.1 596,622 + +0.5 596,622 + -0.0 596,623 - +0.8 596,623 - +0.5 596,654 + +0.1 596,654 + -0.7 596,654 + -0.1 596,655 - -0.4 596,690 + +0.9 596,691 - +0.3 596,691 - -1.9 596,691 - -0.8 596,691 - +0.3 596,691 - -0.7 596,710 + +0.2 596,710 + -0.5 596,710 + -0.3 596,710 + -0.4 596,710 + -0.2 596,710 + -0.3 596,710 + -2.7 596,711 - +0.4 596,711 - -0.0 596,711 - -0.2 596,711 - -0.6 596,711 - -0.3 596,714 + -0.3 596,714 + +0.3 596,714 + +0.2 596,714 + -0.3 596,714 + -1.8 596,715 - -0.1 596,715 - +1.1 596,715 - -0.5 596,715 - -0.6 596,715 - -0.4 596,715 - -1.3 596,715 - +0.7 596,724 - +0.2 596,801 + EX31_RS24120 0.38 +0.0 596,801 + EX31_RS24120 0.38 +0.0 596,801 + EX31_RS24120 0.38 -1.8 596,801 + EX31_RS24120 0.38 -0.4 596,801 + EX31_RS24120 0.38 -1.7 596,801 + EX31_RS24120 0.38 -0.4 596,802 - EX31_RS24120 0.39 -0.7 596,908 + EX31_RS24120 0.81 +0.2 596,908 + EX31_RS24120 0.81 -0.4 596,909 - EX31_RS24120 0.82 -0.1 596,916 - EX31_RS24120 0.84 +0.0 596,938 - -1.2 596,944 + +0.1 596,944 + -2.2 596,945 - -0.6 596,945 - -0.4 596,950 + -0.8 596,950 + +0.5 596,950 + -0.8 596,950 + -1.1 596,950 + +1.0 596,951 - -0.0 596,951 - -2.2 596,951 - +0.7 596,951 - -0.4 596,951 - -1.1 596,951 - +0.6 596,951 - +0.3 596,951 - -0.2 596,951 - +0.1 596,951 - -0.2 596,951 - +0.3 596,951 - -2.1 596,951 - -0.9 596,951 - +1.1 596,951 - +1.0 596,955 - -0.1 596,955 - -0.6 596,955 - -2.4 596,955 - -0.2 597,007 + +1.6 597,014 + +1.4 597,014 + -1.1 597,014 + -0.7 597,015 - -0.3 597,015 - -0.6 597,028 + +0.2 597,028 + +0.3 597,028 + -2.4 597,028 + -0.1 597,029 - +0.2 597,029 - +0.4 597,029 - +0.5 597,029 - +0.8 597,029 - +0.1 597,032 - -0.5 597,032 - +0.3 597,032 - +0.1 597,032 - -0.1 597,073 + -0.7 597,073 + -0.5 597,073 + -0.9 597,074 - -1.8 597,074 - -0.8 597,151 - +0.4 597,151 - -0.8 597,219 + -0.3 597,242 + EX31_RS24125 0.14 +0.4 597,242 + EX31_RS24125 0.14 +0.2 597,321 + EX31_RS24125 0.33 +1.0 597,330 + EX31_RS24125 0.35 -0.3 597,331 - EX31_RS24125 0.35 -0.2 597,375 + EX31_RS24125 0.46 -0.7 597,415 + EX31_RS24125 0.55 -0.4 597,422 + EX31_RS24125 0.57 -0.0 597,423 - EX31_RS24125 0.57 -0.4 597,423 - EX31_RS24125 0.57 -0.3 597,505 + EX31_RS24125 0.77 +0.1 597,523 + EX31_RS24125 0.81 +0.1 597,524 - EX31_RS24125 0.81 -1.2 597,529 + EX31_RS24125 0.83 +0.9 597,529 + EX31_RS24125 0.83 -0.2 597,529 + EX31_RS24125 0.83 +0.6 597,566 + -0.9 597,566 + -0.6 597,566 + -0.1 597,566 + -0.2 597,567 - -0.1 597,567 - -0.1 597,595 + -0.9 597,599 + +0.2 597,611 + +0.7 597,611 + -0.0 597,612 - -1.2 597,636 + +0.1 597,681 + -0.4 597,711 - -0.5 597,713 + -0.7 597,713 + -0.7 597,713 + -1.3 597,713 + +0.6 597,722 - -0.4 597,731 + +1.1 597,763 - -1.3 597,768 - +0.3 597,847 - +1.0
Or see this region's nucleotide sequence