Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23635 and EX31_RS23640 are separated by 170 nucleotides EX31_RS23640 and EX31_RS23645 are separated by 254 nucleotides
EX31_RS23635: EX31_RS23635 - pyridoxal phosphatase, at 490,724 to 491,545
_RS23635
EX31_RS23640: EX31_RS23640 - 6-phosphogluconolactonase, at 491,716 to 492,714
_RS23640
EX31_RS23645: EX31_RS23645 - HAMP domain-containing protein, at 492,969 to 494,480
_RS23645
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 490.725 kb on + strand at 490.725 kb on + strand at 490.808 kb on - strand, within EX31_RS23635 at 490.808 kb on - strand, within EX31_RS23635 at 490.872 kb on + strand, within EX31_RS23635 at 490.872 kb on + strand, within EX31_RS23635 at 490.872 kb on + strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.873 kb on - strand, within EX31_RS23635 at 490.973 kb on + strand, within EX31_RS23635 at 490.974 kb on - strand, within EX31_RS23635 at 490.974 kb on - strand, within EX31_RS23635 at 490.974 kb on - strand, within EX31_RS23635 at 490.974 kb on - strand, within EX31_RS23635 at 490.974 kb on - strand, within EX31_RS23635 at 490.974 kb on - strand, within EX31_RS23635 at 491.038 kb on + strand, within EX31_RS23635 at 491.038 kb on + strand, within EX31_RS23635 at 491.038 kb on + strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.039 kb on - strand, within EX31_RS23635 at 491.128 kb on + strand, within EX31_RS23635 at 491.205 kb on + strand, within EX31_RS23635 at 491.206 kb on - strand, within EX31_RS23635 at 491.206 kb on - strand, within EX31_RS23635 at 491.226 kb on + strand, within EX31_RS23635 at 491.226 kb on + strand, within EX31_RS23635 at 491.226 kb on + strand, within EX31_RS23635 at 491.226 kb on + strand, within EX31_RS23635 at 491.226 kb on + strand, within EX31_RS23635 at 491.226 kb on + strand, within EX31_RS23635 at 491.226 kb on + strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.227 kb on - strand, within EX31_RS23635 at 491.250 kb on + strand, within EX31_RS23635 at 491.251 kb on - strand, within EX31_RS23635 at 491.251 kb on - strand, within EX31_RS23635 at 491.307 kb on - strand, within EX31_RS23635 at 491.314 kb on + strand, within EX31_RS23635 at 491.315 kb on - strand, within EX31_RS23635 at 491.315 kb on - strand, within EX31_RS23635 at 491.315 kb on - strand, within EX31_RS23635 at 491.315 kb on - strand, within EX31_RS23635 at 491.325 kb on + strand, within EX31_RS23635 at 491.325 kb on + strand, within EX31_RS23635 at 491.331 kb on + strand, within EX31_RS23635 at 491.332 kb on - strand, within EX31_RS23635 at 491.332 kb on - strand, within EX31_RS23635 at 491.337 kb on + strand, within EX31_RS23635 at 491.337 kb on + strand, within EX31_RS23635 at 491.337 kb on + strand, within EX31_RS23635 at 491.337 kb on + strand, within EX31_RS23635 at 491.337 kb on + strand, within EX31_RS23635 at 491.338 kb on - strand, within EX31_RS23635 at 491.338 kb on - strand, within EX31_RS23635 at 491.338 kb on - strand, within EX31_RS23635 at 491.338 kb on - strand, within EX31_RS23635 at 491.338 kb on - strand, within EX31_RS23635 at 491.338 kb on - strand, within EX31_RS23635 at 491.357 kb on - strand, within EX31_RS23635 at 491.386 kb on - strand, within EX31_RS23635 at 491.386 kb on - strand, within EX31_RS23635 at 491.386 kb on - strand, within EX31_RS23635 at 491.486 kb on - strand at 491.531 kb on - strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.559 kb on + strand at 491.560 kb on - strand at 491.560 kb on - strand at 491.560 kb on - strand at 491.560 kb on - strand at 491.574 kb on - strand at 491.592 kb on + strand at 491.592 kb on + strand at 491.593 kb on - strand at 491.593 kb on - strand at 491.595 kb on + strand at 491.596 kb on - strand at 491.604 kb on + strand at 491.612 kb on + strand at 491.613 kb on - strand at 491.613 kb on - strand at 491.617 kb on - strand at 491.635 kb on + strand at 491.635 kb on + strand at 491.635 kb on + strand at 491.649 kb on + strand at 491.650 kb on - strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.667 kb on + strand at 491.668 kb on - strand at 491.668 kb on - strand at 491.668 kb on - strand at 491.668 kb on - strand at 491.701 kb on + strand at 491.702 kb on - strand at 491.702 kb on - strand at 491.702 kb on - strand at 491.705 kb on - strand at 491.731 kb on + strand at 491.731 kb on + strand at 491.876 kb on + strand, within EX31_RS23640 at 491.876 kb on + strand, within EX31_RS23640 at 491.876 kb on + strand, within EX31_RS23640 at 491.877 kb on - strand, within EX31_RS23640 at 491.877 kb on - strand, within EX31_RS23640 at 491.976 kb on + strand, within EX31_RS23640 at 492.014 kb on - strand, within EX31_RS23640 at 492.021 kb on + strand, within EX31_RS23640 at 492.256 kb on - strand, within EX31_RS23640 at 492.256 kb on - strand, within EX31_RS23640 at 492.293 kb on + strand, within EX31_RS23640 at 492.293 kb on + strand, within EX31_RS23640 at 492.294 kb on - strand, within EX31_RS23640 at 492.294 kb on - strand, within EX31_RS23640 at 492.375 kb on + strand, within EX31_RS23640 at 492.375 kb on + strand, within EX31_RS23640 at 492.446 kb on - strand, within EX31_RS23640 at 492.577 kb on + strand, within EX31_RS23640 at 492.577 kb on + strand, within EX31_RS23640 at 492.578 kb on - strand, within EX31_RS23640 at 492.578 kb on - strand, within EX31_RS23640 at 492.742 kb on + strand at 492.743 kb on - strand at 492.767 kb on + strand at 492.830 kb on + strand at 492.830 kb on + strand at 492.866 kb on + strand at 492.866 kb on + strand at 492.867 kb on - strand at 492.976 kb on + strand at 492.976 kb on + strand at 492.977 kb on - strand at 493.133 kb on + strand, within EX31_RS23645 at 493.133 kb on + strand, within EX31_RS23645 at 493.134 kb on - strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.182 kb on + strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.183 kb on - strand, within EX31_RS23645 at 493.184 kb on + strand, within EX31_RS23645 at 493.184 kb on + strand, within EX31_RS23645 at 493.184 kb on + strand, within EX31_RS23645 at 493.184 kb on + strand, within EX31_RS23645 at 493.184 kb on + strand, within EX31_RS23645 at 493.184 kb on + strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.185 kb on - strand, within EX31_RS23645 at 493.270 kb on - strand, within EX31_RS23645 at 493.270 kb on - strand, within EX31_RS23645 at 493.270 kb on - strand, within EX31_RS23645 at 493.625 kb on + strand, within EX31_RS23645 at 493.625 kb on + strand, within EX31_RS23645
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 490,725 + -1.0 490,725 + +2.5 490,808 - EX31_RS23635 0.10 +0.1 490,808 - EX31_RS23635 0.10 +0.8 490,872 + EX31_RS23635 0.18 -1.8 490,872 + EX31_RS23635 0.18 +1.0 490,872 + EX31_RS23635 0.18 -2.3 490,873 - EX31_RS23635 0.18 +0.4 490,873 - EX31_RS23635 0.18 -1.0 490,873 - EX31_RS23635 0.18 -2.1 490,873 - EX31_RS23635 0.18 -0.0 490,873 - EX31_RS23635 0.18 +0.0 490,873 - EX31_RS23635 0.18 -0.5 490,873 - EX31_RS23635 0.18 -0.1 490,873 - EX31_RS23635 0.18 +0.1 490,973 + EX31_RS23635 0.30 -1.5 490,974 - EX31_RS23635 0.30 -1.3 490,974 - EX31_RS23635 0.30 +0.5 490,974 - EX31_RS23635 0.30 -0.5 490,974 - EX31_RS23635 0.30 +0.7 490,974 - EX31_RS23635 0.30 +0.4 490,974 - EX31_RS23635 0.30 -0.8 491,038 + EX31_RS23635 0.38 -0.4 491,038 + EX31_RS23635 0.38 -1.3 491,038 + EX31_RS23635 0.38 +0.6 491,039 - EX31_RS23635 0.38 -0.2 491,039 - EX31_RS23635 0.38 -2.0 491,039 - EX31_RS23635 0.38 +0.3 491,039 - EX31_RS23635 0.38 -2.2 491,039 - EX31_RS23635 0.38 -0.3 491,039 - EX31_RS23635 0.38 +0.4 491,039 - EX31_RS23635 0.38 +1.0 491,039 - EX31_RS23635 0.38 -0.2 491,039 - EX31_RS23635 0.38 -0.1 491,039 - EX31_RS23635 0.38 +0.8 491,039 - EX31_RS23635 0.38 +0.4 491,128 + EX31_RS23635 0.49 +1.0 491,205 + EX31_RS23635 0.59 +0.5 491,206 - EX31_RS23635 0.59 -0.6 491,206 - EX31_RS23635 0.59 +0.4 491,226 + EX31_RS23635 0.61 -0.6 491,226 + EX31_RS23635 0.61 -2.7 491,226 + EX31_RS23635 0.61 -1.4 491,226 + EX31_RS23635 0.61 +0.1 491,226 + EX31_RS23635 0.61 -1.4 491,226 + EX31_RS23635 0.61 -0.2 491,226 + EX31_RS23635 0.61 -0.6 491,227 - EX31_RS23635 0.61 +0.8 491,227 - EX31_RS23635 0.61 +0.2 491,227 - EX31_RS23635 0.61 -0.4 491,227 - EX31_RS23635 0.61 -0.6 491,227 - EX31_RS23635 0.61 -0.6 491,227 - EX31_RS23635 0.61 -0.7 491,227 - EX31_RS23635 0.61 -1.7 491,227 - EX31_RS23635 0.61 -1.1 491,250 + EX31_RS23635 0.64 -0.2 491,251 - EX31_RS23635 0.64 +0.1 491,251 - EX31_RS23635 0.64 -0.7 491,307 - EX31_RS23635 0.71 +0.6 491,314 + EX31_RS23635 0.72 +0.1 491,315 - EX31_RS23635 0.72 +1.0 491,315 - EX31_RS23635 0.72 -0.1 491,315 - EX31_RS23635 0.72 -0.7 491,315 - EX31_RS23635 0.72 +0.6 491,325 + EX31_RS23635 0.73 +0.6 491,325 + EX31_RS23635 0.73 -1.1 491,331 + EX31_RS23635 0.74 -0.0 491,332 - EX31_RS23635 0.74 -0.7 491,332 - EX31_RS23635 0.74 +0.5 491,337 + EX31_RS23635 0.75 -1.0 491,337 + EX31_RS23635 0.75 +0.6 491,337 + EX31_RS23635 0.75 +0.3 491,337 + EX31_RS23635 0.75 +1.0 491,337 + EX31_RS23635 0.75 -0.2 491,338 - EX31_RS23635 0.75 -0.4 491,338 - EX31_RS23635 0.75 +0.9 491,338 - EX31_RS23635 0.75 -0.5 491,338 - EX31_RS23635 0.75 +0.2 491,338 - EX31_RS23635 0.75 -0.9 491,338 - EX31_RS23635 0.75 +1.1 491,357 - EX31_RS23635 0.77 -0.3 491,386 - EX31_RS23635 0.81 -0.0 491,386 - EX31_RS23635 0.81 +0.6 491,386 - EX31_RS23635 0.81 +1.2 491,486 - -0.3 491,531 - -1.6 491,559 + +0.6 491,559 + +0.7 491,559 + +0.4 491,559 + -0.5 491,559 + -0.1 491,560 - +0.5 491,560 - -1.5 491,560 - +0.2 491,560 - -1.4 491,574 - -0.6 491,592 + +0.1 491,592 + +1.2 491,593 - +1.2 491,593 - +0.3 491,595 + -2.7 491,596 - +1.1 491,604 + +0.3 491,612 + -0.3 491,613 - +0.6 491,613 - -1.0 491,617 - +0.5 491,635 + -0.3 491,635 + -0.4 491,635 + -0.3 491,649 + +0.2 491,650 - +0.2 491,667 + -1.0 491,667 + +0.4 491,667 + -0.2 491,667 + -0.8 491,667 + -1.1 491,667 + +0.1 491,667 + -0.1 491,667 + +0.4 491,667 + +0.4 491,668 - +0.1 491,668 - -0.8 491,668 - -1.2 491,668 - -0.4 491,701 + -1.0 491,702 - -0.5 491,702 - -2.0 491,702 - +0.4 491,705 - -0.9 491,731 + +0.1 491,731 + +0.7 491,876 + EX31_RS23640 0.16 +0.4 491,876 + EX31_RS23640 0.16 +1.0 491,876 + EX31_RS23640 0.16 +1.4 491,877 - EX31_RS23640 0.16 +1.3 491,877 - EX31_RS23640 0.16 -0.2 491,976 + EX31_RS23640 0.26 +0.6 492,014 - EX31_RS23640 0.30 -0.1 492,021 + EX31_RS23640 0.31 +2.0 492,256 - EX31_RS23640 0.54 +0.1 492,256 - EX31_RS23640 0.54 +0.3 492,293 + EX31_RS23640 0.58 +0.3 492,293 + EX31_RS23640 0.58 -2.1 492,294 - EX31_RS23640 0.58 +0.8 492,294 - EX31_RS23640 0.58 +2.3 492,375 + EX31_RS23640 0.66 +0.0 492,375 + EX31_RS23640 0.66 +0.8 492,446 - EX31_RS23640 0.73 +1.7 492,577 + EX31_RS23640 0.86 +0.8 492,577 + EX31_RS23640 0.86 +0.8 492,578 - EX31_RS23640 0.86 -0.7 492,578 - EX31_RS23640 0.86 +0.6 492,742 + -0.3 492,743 - -0.1 492,767 + -0.0 492,830 + +0.8 492,830 + +0.5 492,866 + -0.2 492,866 + +0.9 492,867 - +2.1 492,976 + +2.0 492,976 + -0.6 492,977 - +0.6 493,133 + EX31_RS23645 0.11 -1.2 493,133 + EX31_RS23645 0.11 +1.4 493,134 - EX31_RS23645 0.11 -0.1 493,182 + EX31_RS23645 0.14 +0.7 493,182 + EX31_RS23645 0.14 -0.6 493,182 + EX31_RS23645 0.14 -0.8 493,182 + EX31_RS23645 0.14 +0.9 493,182 + EX31_RS23645 0.14 -0.4 493,182 + EX31_RS23645 0.14 -0.6 493,182 + EX31_RS23645 0.14 +0.3 493,182 + EX31_RS23645 0.14 +0.9 493,182 + EX31_RS23645 0.14 +0.6 493,182 + EX31_RS23645 0.14 -0.8 493,182 + EX31_RS23645 0.14 -1.9 493,183 - EX31_RS23645 0.14 +1.7 493,183 - EX31_RS23645 0.14 +0.7 493,183 - EX31_RS23645 0.14 +0.5 493,183 - EX31_RS23645 0.14 -1.1 493,183 - EX31_RS23645 0.14 +0.3 493,183 - EX31_RS23645 0.14 +0.0 493,183 - EX31_RS23645 0.14 -0.9 493,183 - EX31_RS23645 0.14 +0.9 493,183 - EX31_RS23645 0.14 -0.6 493,183 - EX31_RS23645 0.14 -0.2 493,183 - EX31_RS23645 0.14 +0.1 493,183 - EX31_RS23645 0.14 -1.7 493,183 - EX31_RS23645 0.14 +0.1 493,183 - EX31_RS23645 0.14 -1.1 493,183 - EX31_RS23645 0.14 +0.3 493,184 + EX31_RS23645 0.14 -0.0 493,184 + EX31_RS23645 0.14 +0.6 493,184 + EX31_RS23645 0.14 -0.8 493,184 + EX31_RS23645 0.14 +0.3 493,184 + EX31_RS23645 0.14 +0.3 493,184 + EX31_RS23645 0.14 -1.1 493,185 - EX31_RS23645 0.14 +0.2 493,185 - EX31_RS23645 0.14 -0.2 493,185 - EX31_RS23645 0.14 +0.2 493,185 - EX31_RS23645 0.14 -0.1 493,185 - EX31_RS23645 0.14 -0.4 493,185 - EX31_RS23645 0.14 +1.5 493,185 - EX31_RS23645 0.14 +0.5 493,185 - EX31_RS23645 0.14 +1.2 493,185 - EX31_RS23645 0.14 -0.4 493,185 - EX31_RS23645 0.14 +3.2 493,270 - EX31_RS23645 0.20 -0.9 493,270 - EX31_RS23645 0.20 -1.0 493,270 - EX31_RS23645 0.20 +1.4 493,625 + EX31_RS23645 0.43 -0.2 493,625 + EX31_RS23645 0.43 -0.4
Or see this region's nucleotide sequence