Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09400 and EX31_RS09405 are separated by 151 nucleotides EX31_RS09405 and EX31_RS09410 are separated by 44 nucleotides
EX31_RS09400: EX31_RS09400 - deferrochelatase/peroxidase EfeB, at 84,927 to 86,222
_RS09400
EX31_RS09405: EX31_RS09405 - iron uptake system protein EfeO, at 86,374 to 87,501
_RS09405
EX31_RS09410: EX31_RS09410 - iron permease, at 87,546 to 88,397
_RS09410
Position (kb) 86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.394 kb on - strand, within EX31_RS09400 at 85.559 kb on + strand, within EX31_RS09400 at 85.559 kb on + strand, within EX31_RS09400 at 85.591 kb on - strand, within EX31_RS09400 at 85.604 kb on - strand, within EX31_RS09400 at 85.638 kb on - strand, within EX31_RS09400 at 85.743 kb on - strand, within EX31_RS09400 at 86.027 kb on - strand, within EX31_RS09400 at 86.029 kb on + strand, within EX31_RS09400 at 86.030 kb on - strand, within EX31_RS09400 at 86.148 kb on + strand at 86.242 kb on - strand at 86.282 kb on + strand at 86.282 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.325 kb on + strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.326 kb on - strand at 86.380 kb on + strand at 86.380 kb on + strand at 86.381 kb on - strand at 86.381 kb on - strand at 86.501 kb on + strand, within EX31_RS09405 at 86.502 kb on - strand, within EX31_RS09405 at 86.506 kb on - strand, within EX31_RS09405 at 86.506 kb on - strand, within EX31_RS09405 at 86.782 kb on - strand, within EX31_RS09405 at 86.784 kb on - strand, within EX31_RS09405 at 86.784 kb on - strand, within EX31_RS09405 at 86.964 kb on - strand, within EX31_RS09405 at 86.964 kb on - strand, within EX31_RS09405 at 86.967 kb on - strand, within EX31_RS09405 at 86.967 kb on - strand, within EX31_RS09405 at 87.078 kb on - strand, within EX31_RS09405 at 87.078 kb on - strand, within EX31_RS09405 at 87.087 kb on - strand, within EX31_RS09405 at 87.204 kb on - strand, within EX31_RS09405 at 87.503 kb on + strand at 87.503 kb on + strand at 87.503 kb on + strand at 87.503 kb on + strand at 87.503 kb on + strand at 87.503 kb on + strand at 87.504 kb on - strand at 87.504 kb on - strand at 87.504 kb on - strand at 87.504 kb on - strand at 87.504 kb on - strand at 87.504 kb on - strand at 87.504 kb on - strand at 87.504 kb on - strand at 87.596 kb on + strand at 87.609 kb on - strand at 87.609 kb on - strand at 87.638 kb on - strand, within EX31_RS09410 at 88.109 kb on + strand, within EX31_RS09410 at 88.110 kb on - strand, within EX31_RS09410 at 88.144 kb on + strand, within EX31_RS09410 at 88.144 kb on + strand, within EX31_RS09410 at 88.144 kb on + strand, within EX31_RS09410 at 88.144 kb on + strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.145 kb on - strand, within EX31_RS09410 at 88.178 kb on + strand, within EX31_RS09410 at 88.179 kb on - strand, within EX31_RS09410 at 88.325 kb on - strand at 88.376 kb on + strand at 88.377 kb on - strand at 88.441 kb on + strand at 88.441 kb on + strand at 88.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 85,394 - EX31_RS09400 0.36 +0.2 85,559 + EX31_RS09400 0.49 -0.6 85,559 + EX31_RS09400 0.49 -1.0 85,591 - EX31_RS09400 0.51 +0.0 85,604 - EX31_RS09400 0.52 -0.6 85,638 - EX31_RS09400 0.55 +0.5 85,743 - EX31_RS09400 0.63 -1.0 86,027 - EX31_RS09400 0.85 +1.2 86,029 + EX31_RS09400 0.85 -1.6 86,030 - EX31_RS09400 0.85 -2.6 86,148 + -0.8 86,242 - -0.0 86,282 + -0.1 86,282 + -0.3 86,325 + -1.9 86,325 + -1.5 86,325 + +0.5 86,325 + +1.1 86,325 + -1.7 86,326 - +0.4 86,326 - -1.6 86,326 - +0.6 86,326 - +0.3 86,326 - +0.2 86,326 - +0.1 86,326 - -0.0 86,326 - -0.8 86,326 - -2.1 86,326 - -0.1 86,380 + +0.4 86,380 + +0.9 86,381 - -0.3 86,381 - +0.1 86,501 + EX31_RS09405 0.11 -0.3 86,502 - EX31_RS09405 0.11 -1.4 86,506 - EX31_RS09405 0.12 -0.3 86,506 - EX31_RS09405 0.12 -0.3 86,782 - EX31_RS09405 0.36 -0.3 86,784 - EX31_RS09405 0.36 -2.0 86,784 - EX31_RS09405 0.36 -0.3 86,964 - EX31_RS09405 0.52 -0.8 86,964 - EX31_RS09405 0.52 +0.9 86,967 - EX31_RS09405 0.53 +0.9 86,967 - EX31_RS09405 0.53 -1.2 87,078 - EX31_RS09405 0.62 +0.1 87,078 - EX31_RS09405 0.62 -0.3 87,087 - EX31_RS09405 0.63 -0.2 87,204 - EX31_RS09405 0.74 -0.3 87,503 + +0.2 87,503 + -0.6 87,503 + +1.2 87,503 + -0.8 87,503 + +0.0 87,503 + -1.2 87,504 - -1.0 87,504 - +2.0 87,504 - -1.0 87,504 - +0.9 87,504 - -0.0 87,504 - +0.1 87,504 - +1.1 87,504 - +0.4 87,596 + +0.4 87,609 - -0.8 87,609 - -0.9 87,638 - EX31_RS09410 0.11 +1.0 88,109 + EX31_RS09410 0.66 -1.3 88,110 - EX31_RS09410 0.66 +0.8 88,144 + EX31_RS09410 0.70 +0.6 88,144 + EX31_RS09410 0.70 -1.5 88,144 + EX31_RS09410 0.70 +1.8 88,144 + EX31_RS09410 0.70 +0.3 88,145 - EX31_RS09410 0.70 -2.6 88,145 - EX31_RS09410 0.70 -0.4 88,145 - EX31_RS09410 0.70 -0.0 88,145 - EX31_RS09410 0.70 -0.4 88,145 - EX31_RS09410 0.70 -0.8 88,145 - EX31_RS09410 0.70 -1.1 88,145 - EX31_RS09410 0.70 -0.8 88,145 - EX31_RS09410 0.70 +0.7 88,145 - EX31_RS09410 0.70 +0.0 88,145 - EX31_RS09410 0.70 -0.3 88,145 - EX31_RS09410 0.70 +1.1 88,145 - EX31_RS09410 0.70 -2.8 88,145 - EX31_RS09410 0.70 -0.6 88,178 + EX31_RS09410 0.74 -1.0 88,179 - EX31_RS09410 0.74 -0.1 88,325 - +0.2 88,376 + -1.1 88,377 - +0.2 88,441 + -0.5 88,441 + +0.3 88,442 - -1.3
Or see this region's nucleotide sequence