Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07075 and EX31_RS07080 are separated by 127 nucleotides EX31_RS07080 and EX31_RS07085 are separated by 312 nucleotides
EX31_RS07075: EX31_RS07075 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 208,413 to 209,162
_RS07075
EX31_RS07080: EX31_RS07080 - NCS2 family permease, at 209,290 to 210,585
_RS07080
EX31_RS07085: EX31_RS07085 - LysR family transcriptional regulator, at 210,898 to 211,803
_RS07085
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.301 kb on + strand at 208.301 kb on + strand at 208.301 kb on + strand at 208.354 kb on + strand at 208.354 kb on + strand at 208.368 kb on - strand at 208.418 kb on + strand at 208.557 kb on + strand, within EX31_RS07075 at 208.557 kb on + strand, within EX31_RS07075 at 208.592 kb on + strand, within EX31_RS07075 at 208.632 kb on - strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.746 kb on + strand, within EX31_RS07075 at 208.747 kb on - strand, within EX31_RS07075 at 208.747 kb on - strand, within EX31_RS07075 at 209.013 kb on + strand, within EX31_RS07075 at 209.018 kb on + strand, within EX31_RS07075 at 209.163 kb on + strand at 209.163 kb on + strand at 209.163 kb on + strand at 209.164 kb on - strand at 209.164 kb on - strand at 209.211 kb on - strand at 209.289 kb on - strand at 209.289 kb on - strand at 209.289 kb on - strand at 209.341 kb on - strand at 209.432 kb on + strand, within EX31_RS07080 at 209.432 kb on + strand, within EX31_RS07080 at 209.433 kb on - strand, within EX31_RS07080 at 209.678 kb on + strand, within EX31_RS07080 at 209.678 kb on + strand, within EX31_RS07080 at 209.679 kb on - strand, within EX31_RS07080 at 209.679 kb on - strand, within EX31_RS07080 at 209.679 kb on - strand, within EX31_RS07080 at 210.164 kb on - strand, within EX31_RS07080 at 210.164 kb on - strand, within EX31_RS07080 at 210.258 kb on + strand, within EX31_RS07080 at 210.309 kb on + strand, within EX31_RS07080 at 210.427 kb on - strand, within EX31_RS07080 at 210.494 kb on + strand at 210.505 kb on + strand at 210.513 kb on + strand at 210.514 kb on - strand at 210.514 kb on - strand at 210.549 kb on + strand at 210.549 kb on + strand at 210.549 kb on + strand at 210.567 kb on + strand at 210.567 kb on + strand at 210.568 kb on - strand at 210.568 kb on - strand at 210.568 kb on - strand at 210.571 kb on + strand at 210.647 kb on + strand at 210.647 kb on + strand at 210.647 kb on + strand at 210.650 kb on + strand at 210.743 kb on + strand at 210.743 kb on + strand at 210.810 kb on - strand at 210.859 kb on + strand at 210.859 kb on + strand at 210.859 kb on + strand at 210.860 kb on - strand at 210.863 kb on + strand at 211.360 kb on - strand, within EX31_RS07085 at 211.525 kb on + strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.566 kb on + strand, within EX31_RS07085 at 211.566 kb on + strand, within EX31_RS07085 at 211.567 kb on - strand, within EX31_RS07085
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 208,301 + -0.1 208,301 + -0.1 208,301 + +0.2 208,354 + +1.3 208,354 + +1.2 208,368 - +1.1 208,418 + -0.1 208,557 + EX31_RS07075 0.19 +0.5 208,557 + EX31_RS07075 0.19 -0.2 208,592 + EX31_RS07075 0.24 +0.3 208,632 - EX31_RS07075 0.29 -0.2 208,746 + EX31_RS07075 0.44 +0.1 208,746 + EX31_RS07075 0.44 -0.2 208,746 + EX31_RS07075 0.44 +0.3 208,746 + EX31_RS07075 0.44 +0.3 208,747 - EX31_RS07075 0.45 -1.3 208,747 - EX31_RS07075 0.45 -0.3 209,013 + EX31_RS07075 0.80 -1.3 209,018 + EX31_RS07075 0.81 +0.1 209,163 + +0.1 209,163 + -0.7 209,163 + +0.2 209,164 - +1.0 209,164 - +0.2 209,211 - +1.4 209,289 - +0.3 209,289 - -1.1 209,289 - -0.1 209,341 - +1.5 209,432 + EX31_RS07080 0.11 +0.6 209,432 + EX31_RS07080 0.11 -1.3 209,433 - EX31_RS07080 0.11 -1.5 209,678 + EX31_RS07080 0.30 -0.4 209,678 + EX31_RS07080 0.30 -0.2 209,679 - EX31_RS07080 0.30 -0.6 209,679 - EX31_RS07080 0.30 -0.2 209,679 - EX31_RS07080 0.30 -0.1 210,164 - EX31_RS07080 0.67 -0.6 210,164 - EX31_RS07080 0.67 -1.0 210,258 + EX31_RS07080 0.75 -0.1 210,309 + EX31_RS07080 0.79 -1.0 210,427 - EX31_RS07080 0.88 +0.1 210,494 + -0.1 210,505 + -0.2 210,513 + -0.2 210,514 - +0.9 210,514 - +1.9 210,549 + +1.0 210,549 + +1.3 210,549 + -0.9 210,567 + +0.5 210,567 + +1.0 210,568 - +0.9 210,568 - +1.1 210,568 - +0.9 210,571 + +0.7 210,647 + +0.5 210,647 + -1.5 210,647 + +0.8 210,650 + -0.2 210,743 + +0.8 210,743 + +1.7 210,810 - -0.8 210,859 + +0.3 210,859 + -0.3 210,859 + -0.2 210,860 - -2.4 210,863 + +0.1 211,360 - EX31_RS07085 0.51 +0.6 211,525 + EX31_RS07085 0.69 +0.7 211,526 - EX31_RS07085 0.69 +0.0 211,526 - EX31_RS07085 0.69 +0.2 211,526 - EX31_RS07085 0.69 +0.5 211,526 - EX31_RS07085 0.69 -0.8 211,526 - EX31_RS07085 0.69 -0.3 211,566 + EX31_RS07085 0.74 +1.1 211,566 + EX31_RS07085 0.74 -0.8 211,567 - EX31_RS07085 0.74 -0.1
Or see this region's nucleotide sequence