Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07015 and EX31_RS07020 are separated by 11 nucleotides EX31_RS07020 and EX31_RS07025 overlap by 8 nucleotides
EX31_RS07015: EX31_RS07015 - xanthine dehydrogenase accessory protein XdhC, at 192,915 to 193,685
_RS07015
EX31_RS07020: EX31_RS07020 - xanthine dehydrogenase molybdopterin binding subunit, at 193,697 to 196,096
_RS07020
EX31_RS07025: EX31_RS07025 - xanthine dehydrogenase small subunit, at 196,089 to 197,492
_RS07025
Position (kb) 193
194
195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.746 kb on + strand at 192.809 kb on - strand at 192.845 kb on - strand at 192.855 kb on - strand at 192.900 kb on - strand at 193.180 kb on + strand, within EX31_RS07015 at 193.181 kb on - strand, within EX31_RS07015 at 193.181 kb on - strand, within EX31_RS07015 at 193.284 kb on + strand, within EX31_RS07015 at 193.306 kb on - strand, within EX31_RS07015 at 193.505 kb on + strand, within EX31_RS07015 at 193.538 kb on + strand, within EX31_RS07015 at 193.539 kb on - strand, within EX31_RS07015 at 193.540 kb on + strand, within EX31_RS07015 at 193.656 kb on + strand at 193.657 kb on - strand at 193.657 kb on - strand at 193.657 kb on - strand at 193.724 kb on - strand at 193.818 kb on - strand at 194.192 kb on + strand, within EX31_RS07020 at 194.224 kb on - strand, within EX31_RS07020 at 194.226 kb on + strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020 at 194.665 kb on - strand, within EX31_RS07020 at 194.757 kb on + strand, within EX31_RS07020 at 194.805 kb on + strand, within EX31_RS07020 at 194.805 kb on + strand, within EX31_RS07020 at 194.901 kb on + strand, within EX31_RS07020 at 194.904 kb on + strand, within EX31_RS07020 at 195.072 kb on + strand, within EX31_RS07020 at 195.072 kb on + strand, within EX31_RS07020 at 195.076 kb on - strand, within EX31_RS07020 at 195.076 kb on - strand, within EX31_RS07020 at 195.113 kb on - strand, within EX31_RS07020 at 195.157 kb on + strand, within EX31_RS07020 at 195.197 kb on + strand, within EX31_RS07020 at 195.197 kb on + strand, within EX31_RS07020 at 195.205 kb on - strand, within EX31_RS07020 at 195.205 kb on - strand, within EX31_RS07020 at 195.371 kb on - strand, within EX31_RS07020 at 195.453 kb on + strand, within EX31_RS07020 at 195.453 kb on + strand, within EX31_RS07020 at 195.454 kb on - strand, within EX31_RS07020 at 195.454 kb on - strand, within EX31_RS07020 at 195.454 kb on - strand, within EX31_RS07020 at 195.511 kb on - strand, within EX31_RS07020 at 195.965 kb on - strand at 195.966 kb on + strand at 195.966 kb on + strand at 195.966 kb on + strand at 195.966 kb on + strand at 195.966 kb on + strand at 195.967 kb on - strand at 195.967 kb on - strand at 195.967 kb on - strand at 195.967 kb on - strand at 196.096 kb on + strand at 196.096 kb on + strand at 196.096 kb on + strand at 196.097 kb on - strand at 196.097 kb on - strand at 196.097 kb on - strand at 196.278 kb on + strand, within EX31_RS07025 at 196.278 kb on + strand, within EX31_RS07025 at 196.279 kb on - strand, within EX31_RS07025 at 196.363 kb on - strand, within EX31_RS07025 at 196.363 kb on - strand, within EX31_RS07025 at 196.400 kb on + strand, within EX31_RS07025 at 196.428 kb on - strand, within EX31_RS07025 at 196.429 kb on + strand, within EX31_RS07025 at 196.430 kb on - strand, within EX31_RS07025 at 196.430 kb on - strand, within EX31_RS07025 at 196.430 kb on - strand, within EX31_RS07025 at 196.722 kb on + strand, within EX31_RS07025 at 196.734 kb on - strand, within EX31_RS07025 at 196.913 kb on - strand, within EX31_RS07025
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 192,746 + +0.5 192,809 - -0.4 192,845 - -1.7 192,855 - -0.8 192,900 - -0.4 193,180 + EX31_RS07015 0.34 -0.1 193,181 - EX31_RS07015 0.35 +0.2 193,181 - EX31_RS07015 0.35 +0.3 193,284 + EX31_RS07015 0.48 +0.5 193,306 - EX31_RS07015 0.51 +1.9 193,505 + EX31_RS07015 0.77 +0.4 193,538 + EX31_RS07015 0.81 -0.2 193,539 - EX31_RS07015 0.81 +0.2 193,540 + EX31_RS07015 0.81 +0.7 193,656 + +0.0 193,657 - +0.6 193,657 - -2.5 193,657 - +0.3 193,724 - -0.8 193,818 - +0.1 194,192 + EX31_RS07020 0.21 -1.0 194,224 - EX31_RS07020 0.22 -0.2 194,226 + EX31_RS07020 0.22 -1.6 194,665 - EX31_RS07020 0.40 +0.2 194,665 - EX31_RS07020 0.40 +0.1 194,665 - EX31_RS07020 0.40 -0.3 194,665 - EX31_RS07020 0.40 -1.5 194,757 + EX31_RS07020 0.44 +0.8 194,805 + EX31_RS07020 0.46 +0.8 194,805 + EX31_RS07020 0.46 +0.2 194,901 + EX31_RS07020 0.50 +0.2 194,904 + EX31_RS07020 0.50 -0.2 195,072 + EX31_RS07020 0.57 -0.2 195,072 + EX31_RS07020 0.57 -0.4 195,076 - EX31_RS07020 0.57 -1.3 195,076 - EX31_RS07020 0.57 +0.9 195,113 - EX31_RS07020 0.59 +0.4 195,157 + EX31_RS07020 0.61 -1.5 195,197 + EX31_RS07020 0.62 -0.6 195,197 + EX31_RS07020 0.62 -1.4 195,205 - EX31_RS07020 0.63 -0.0 195,205 - EX31_RS07020 0.63 -0.2 195,371 - EX31_RS07020 0.70 -2.6 195,453 + EX31_RS07020 0.73 -1.0 195,453 + EX31_RS07020 0.73 -0.6 195,454 - EX31_RS07020 0.73 -0.9 195,454 - EX31_RS07020 0.73 -0.1 195,454 - EX31_RS07020 0.73 -0.2 195,511 - EX31_RS07020 0.76 +0.3 195,965 - +0.7 195,966 + -1.9 195,966 + +0.8 195,966 + -0.4 195,966 + +0.2 195,966 + -3.2 195,967 - +1.0 195,967 - -0.4 195,967 - +0.8 195,967 - +1.6 196,096 + -1.1 196,096 + -0.7 196,096 + +0.6 196,097 - -0.5 196,097 - -0.8 196,097 - +0.5 196,278 + EX31_RS07025 0.13 +0.4 196,278 + EX31_RS07025 0.13 -0.7 196,279 - EX31_RS07025 0.14 +0.5 196,363 - EX31_RS07025 0.20 +2.1 196,363 - EX31_RS07025 0.20 +0.4 196,400 + EX31_RS07025 0.22 +0.9 196,428 - EX31_RS07025 0.24 -0.4 196,429 + EX31_RS07025 0.24 +0.6 196,430 - EX31_RS07025 0.24 +0.3 196,430 - EX31_RS07025 0.24 +1.5 196,430 - EX31_RS07025 0.24 -0.1 196,722 + EX31_RS07025 0.45 +0.6 196,734 - EX31_RS07025 0.46 -1.9 196,913 - EX31_RS07025 0.59 -0.2
Or see this region's nucleotide sequence