Strain Fitness in Rahnella sp. WP5 around EX31_RS03435

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03430 and EX31_RS03435 are separated by 24 nucleotidesEX31_RS03435 and EX31_RS03440 overlap by 4 nucleotidesEX31_RS03440 and EX31_RS03445 overlap by 14 nucleotides EX31_RS03430: EX31_RS03430 - extracellular solute-binding protein, at 175,558 to 176,646 _RS03430 EX31_RS03435: EX31_RS03435 - ABC transporter permease, at 176,671 to 177,507 _RS03435 EX31_RS03440: EX31_RS03440 - ABC transporter permease, at 177,504 to 178,367 _RS03440 EX31_RS03445: EX31_RS03445 - ABC transporter ATP-binding protein, at 178,354 to 179,445 _RS03445 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 175.900 kb on + strand, within EX31_RS03430at 175.900 kb on + strand, within EX31_RS03430at 175.900 kb on + strand, within EX31_RS03430at 175.900 kb on + strand, within EX31_RS03430at 175.901 kb on - strand, within EX31_RS03430at 175.929 kb on + strand, within EX31_RS03430at 175.966 kb on - strand, within EX31_RS03430at 176.004 kb on + strand, within EX31_RS03430at 176.005 kb on - strand, within EX31_RS03430at 176.007 kb on + strand, within EX31_RS03430at 176.007 kb on + strand, within EX31_RS03430at 176.007 kb on + strand, within EX31_RS03430at 176.008 kb on - strand, within EX31_RS03430at 176.008 kb on - strand, within EX31_RS03430at 176.077 kb on - strand, within EX31_RS03430at 176.114 kb on + strand, within EX31_RS03430at 176.143 kb on - strand, within EX31_RS03430at 176.152 kb on + strand, within EX31_RS03430at 176.153 kb on - strand, within EX31_RS03430at 176.153 kb on - strand, within EX31_RS03430at 176.153 kb on - strand, within EX31_RS03430at 176.254 kb on - strand, within EX31_RS03430at 176.306 kb on - strand, within EX31_RS03430at 176.306 kb on - strand, within EX31_RS03430at 176.410 kb on - strand, within EX31_RS03430at 176.442 kb on + strand, within EX31_RS03430at 176.451 kb on + strand, within EX31_RS03430at 176.451 kb on + strand, within EX31_RS03430at 176.452 kb on - strand, within EX31_RS03430at 176.503 kb on + strand, within EX31_RS03430at 176.503 kb on + strand, within EX31_RS03430at 176.503 kb on + strand, within EX31_RS03430at 176.504 kb on - strand, within EX31_RS03430at 176.504 kb on - strand, within EX31_RS03430at 176.504 kb on - strand, within EX31_RS03430at 176.507 kb on + strand, within EX31_RS03430at 176.507 kb on + strand, within EX31_RS03430at 176.507 kb on + strand, within EX31_RS03430at 176.608 kb on + strandat 176.609 kb on - strandat 176.609 kb on - strandat 176.609 kb on - strandat 176.626 kb on + strandat 176.626 kb on + strandat 176.663 kb on - strandat 176.699 kb on + strandat 176.699 kb on + strandat 176.699 kb on + strandat 176.699 kb on + strandat 176.700 kb on - strandat 176.700 kb on - strandat 176.814 kb on - strand, within EX31_RS03435at 176.858 kb on + strand, within EX31_RS03435at 176.858 kb on + strand, within EX31_RS03435at 176.859 kb on - strand, within EX31_RS03435at 176.859 kb on - strand, within EX31_RS03435at 176.859 kb on - strand, within EX31_RS03435at 176.859 kb on - strand, within EX31_RS03435at 176.996 kb on - strand, within EX31_RS03435at 177.030 kb on + strand, within EX31_RS03435at 177.030 kb on + strand, within EX31_RS03435at 177.031 kb on - strand, within EX31_RS03435at 177.031 kb on - strand, within EX31_RS03435at 177.031 kb on - strand, within EX31_RS03435at 177.031 kb on - strand, within EX31_RS03435at 177.031 kb on - strand, within EX31_RS03435at 177.044 kb on + strand, within EX31_RS03435at 177.144 kb on + strand, within EX31_RS03435at 177.144 kb on + strand, within EX31_RS03435at 177.144 kb on + strand, within EX31_RS03435at 177.144 kb on + strand, within EX31_RS03435at 177.145 kb on - strand, within EX31_RS03435at 177.145 kb on - strand, within EX31_RS03435at 177.145 kb on - strand, within EX31_RS03435at 177.221 kb on + strand, within EX31_RS03435at 177.221 kb on + strand, within EX31_RS03435at 177.244 kb on + strand, within EX31_RS03435at 177.244 kb on + strand, within EX31_RS03435at 177.245 kb on - strand, within EX31_RS03435at 177.278 kb on + strand, within EX31_RS03435at 177.278 kb on + strand, within EX31_RS03435at 177.278 kb on + strand, within EX31_RS03435at 177.278 kb on + strand, within EX31_RS03435at 177.279 kb on - strand, within EX31_RS03435at 177.279 kb on - strand, within EX31_RS03435at 177.358 kb on + strand, within EX31_RS03435at 177.403 kb on + strand, within EX31_RS03435at 177.403 kb on + strand, within EX31_RS03435at 177.404 kb on - strand, within EX31_RS03435at 177.408 kb on + strand, within EX31_RS03435at 177.409 kb on - strand, within EX31_RS03435at 177.555 kb on - strandat 177.587 kb on + strandat 177.600 kb on - strand, within EX31_RS03440at 177.600 kb on - strand, within EX31_RS03440at 177.611 kb on + strand, within EX31_RS03440at 177.664 kb on + strand, within EX31_RS03440at 177.669 kb on - strand, within EX31_RS03440at 177.825 kb on + strand, within EX31_RS03440at 177.825 kb on + strand, within EX31_RS03440at 177.825 kb on + strand, within EX31_RS03440at 177.825 kb on + strand, within EX31_RS03440at 177.826 kb on - strand, within EX31_RS03440at 177.897 kb on + strand, within EX31_RS03440at 177.897 kb on + strand, within EX31_RS03440at 177.898 kb on - strand, within EX31_RS03440at 177.903 kb on - strand, within EX31_RS03440at 177.935 kb on + strand, within EX31_RS03440at 177.936 kb on - strand, within EX31_RS03440at 177.936 kb on - strand, within EX31_RS03440at 177.954 kb on - strand, within EX31_RS03440at 177.972 kb on + strand, within EX31_RS03440at 177.972 kb on + strand, within EX31_RS03440at 177.972 kb on + strand, within EX31_RS03440at 177.972 kb on + strand, within EX31_RS03440at 177.972 kb on + strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.973 kb on - strand, within EX31_RS03440at 177.994 kb on + strand, within EX31_RS03440at 177.994 kb on + strand, within EX31_RS03440at 178.001 kb on + strand, within EX31_RS03440at 178.002 kb on - strand, within EX31_RS03440at 178.002 kb on - strand, within EX31_RS03440at 178.004 kb on + strand, within EX31_RS03440at 178.005 kb on - strand, within EX31_RS03440at 178.005 kb on - strand, within EX31_RS03440at 178.005 kb on - strand, within EX31_RS03440at 178.070 kb on + strand, within EX31_RS03440at 178.070 kb on + strand, within EX31_RS03440at 178.071 kb on - strand, within EX31_RS03440at 178.071 kb on - strand, within EX31_RS03440at 178.117 kb on + strand, within EX31_RS03440at 178.138 kb on - strand, within EX31_RS03440at 178.169 kb on - strand, within EX31_RS03440at 178.200 kb on + strand, within EX31_RS03440at 178.200 kb on + strand, within EX31_RS03440at 178.201 kb on - strand, within EX31_RS03440at 178.201 kb on - strand, within EX31_RS03440at 178.203 kb on + strand, within EX31_RS03440at 178.203 kb on + strand, within EX31_RS03440at 178.204 kb on - strand, within EX31_RS03440at 178.204 kb on - strand, within EX31_RS03440at 178.204 kb on - strand, within EX31_RS03440at 178.216 kb on + strand, within EX31_RS03440at 178.282 kb on + strandat 178.282 kb on + strandat 178.282 kb on + strandat 178.283 kb on - strandat 178.283 kb on - strandat 178.283 kb on - strandat 178.283 kb on - strandat 178.283 kb on - strandat 178.317 kb on + strandat 178.355 kb on + strandat 178.356 kb on - strandat 178.381 kb on + strandat 178.382 kb on - strandat 178.474 kb on + strand, within EX31_RS03445at 178.474 kb on + strand, within EX31_RS03445at 178.475 kb on - strand, within EX31_RS03445at 178.475 kb on - strand, within EX31_RS03445at 178.485 kb on + strand, within EX31_RS03445at 178.485 kb on + strand, within EX31_RS03445at 178.486 kb on - strand, within EX31_RS03445

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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175,900 + EX31_RS03430 0.31 -0.8
175,900 + EX31_RS03430 0.31 +1.2
175,900 + EX31_RS03430 0.31 -0.5
175,900 + EX31_RS03430 0.31 -1.0
175,901 - EX31_RS03430 0.31 +0.6
175,929 + EX31_RS03430 0.34 -0.3
175,966 - EX31_RS03430 0.37 -0.1
176,004 + EX31_RS03430 0.41 -0.6
176,005 - EX31_RS03430 0.41 +0.4
176,007 + EX31_RS03430 0.41 +0.0
176,007 + EX31_RS03430 0.41 -0.5
176,007 + EX31_RS03430 0.41 +0.3
176,008 - EX31_RS03430 0.41 -0.9
176,008 - EX31_RS03430 0.41 -0.0
176,077 - EX31_RS03430 0.48 +0.7
176,114 + EX31_RS03430 0.51 -1.1
176,143 - EX31_RS03430 0.54 +0.3
176,152 + EX31_RS03430 0.55 +0.2
176,153 - EX31_RS03430 0.55 +0.5
176,153 - EX31_RS03430 0.55 +0.5
176,153 - EX31_RS03430 0.55 +0.1
176,254 - EX31_RS03430 0.64 -0.1
176,306 - EX31_RS03430 0.69 -0.4
176,306 - EX31_RS03430 0.69 -0.1
176,410 - EX31_RS03430 0.78 +0.4
176,442 + EX31_RS03430 0.81 -0.8
176,451 + EX31_RS03430 0.82 +0.1
176,451 + EX31_RS03430 0.82 -0.8
176,452 - EX31_RS03430 0.82 +0.3
176,503 + EX31_RS03430 0.87 -0.2
176,503 + EX31_RS03430 0.87 +0.6
176,503 + EX31_RS03430 0.87 +0.6
176,504 - EX31_RS03430 0.87 -0.8
176,504 - EX31_RS03430 0.87 +1.0
176,504 - EX31_RS03430 0.87 +0.5
176,507 + EX31_RS03430 0.87 +0.6
176,507 + EX31_RS03430 0.87 +0.9
176,507 + EX31_RS03430 0.87 +0.2
176,608 + +1.6
176,609 - +0.3
176,609 - -0.7
176,609 - +1.4
176,626 + -0.5
176,626 + +0.2
176,663 - +0.4
176,699 + +0.4
176,699 + +1.7
176,699 + +0.0
176,699 + -0.1
176,700 - -0.5
176,700 - +1.0
176,814 - EX31_RS03435 0.17 +0.1
176,858 + EX31_RS03435 0.22 -0.1
176,858 + EX31_RS03435 0.22 +0.0
176,859 - EX31_RS03435 0.22 -0.4
176,859 - EX31_RS03435 0.22 +0.6
176,859 - EX31_RS03435 0.22 +0.2
176,859 - EX31_RS03435 0.22 +0.1
176,996 - EX31_RS03435 0.39 +0.3
177,030 + EX31_RS03435 0.43 +0.2
177,030 + EX31_RS03435 0.43 -0.6
177,031 - EX31_RS03435 0.43 -0.1
177,031 - EX31_RS03435 0.43 +0.4
177,031 - EX31_RS03435 0.43 +1.0
177,031 - EX31_RS03435 0.43 +0.4
177,031 - EX31_RS03435 0.43 -0.2
177,044 + EX31_RS03435 0.45 +0.1
177,144 + EX31_RS03435 0.57 +1.0
177,144 + EX31_RS03435 0.57 +0.5
177,144 + EX31_RS03435 0.57 -1.0
177,144 + EX31_RS03435 0.57 +0.3
177,145 - EX31_RS03435 0.57 -0.2
177,145 - EX31_RS03435 0.57 +0.5
177,145 - EX31_RS03435 0.57 +0.5
177,221 + EX31_RS03435 0.66 +0.5
177,221 + EX31_RS03435 0.66 +1.2
177,244 + EX31_RS03435 0.68 +0.0
177,244 + EX31_RS03435 0.68 -2.1
177,245 - EX31_RS03435 0.69 -0.5
177,278 + EX31_RS03435 0.73 +1.0
177,278 + EX31_RS03435 0.73 +1.1
177,278 + EX31_RS03435 0.73 +1.0
177,278 + EX31_RS03435 0.73 +0.5
177,279 - EX31_RS03435 0.73 +0.9
177,279 - EX31_RS03435 0.73 -0.1
177,358 + EX31_RS03435 0.82 +0.1
177,403 + EX31_RS03435 0.87 +1.0
177,403 + EX31_RS03435 0.87 -0.4
177,404 - EX31_RS03435 0.88 +0.4
177,408 + EX31_RS03435 0.88 +0.1
177,409 - EX31_RS03435 0.88 -0.1
177,555 - +0.4
177,587 + -0.3
177,600 - EX31_RS03440 0.11 +0.3
177,600 - EX31_RS03440 0.11 +0.3
177,611 + EX31_RS03440 0.12 -0.1
177,664 + EX31_RS03440 0.19 -0.9
177,669 - EX31_RS03440 0.19 +0.2
177,825 + EX31_RS03440 0.37 +0.5
177,825 + EX31_RS03440 0.37 -0.4
177,825 + EX31_RS03440 0.37 +0.0
177,825 + EX31_RS03440 0.37 -0.8
177,826 - EX31_RS03440 0.37 -1.5
177,897 + EX31_RS03440 0.45 +0.2
177,897 + EX31_RS03440 0.45 -0.7
177,898 - EX31_RS03440 0.46 +0.2
177,903 - EX31_RS03440 0.46 -0.6
177,935 + EX31_RS03440 0.50 +0.6
177,936 - EX31_RS03440 0.50 +0.2
177,936 - EX31_RS03440 0.50 -0.6
177,954 - EX31_RS03440 0.52 +0.8
177,972 + EX31_RS03440 0.54 +0.2
177,972 + EX31_RS03440 0.54 -1.7
177,972 + EX31_RS03440 0.54 -0.8
177,972 + EX31_RS03440 0.54 -0.5
177,972 + EX31_RS03440 0.54 +0.1
177,973 - EX31_RS03440 0.54 -0.5
177,973 - EX31_RS03440 0.54 +0.9
177,973 - EX31_RS03440 0.54 +0.2
177,973 - EX31_RS03440 0.54 +0.7
177,973 - EX31_RS03440 0.54 -0.9
177,973 - EX31_RS03440 0.54 +2.0
177,973 - EX31_RS03440 0.54 -0.7
177,973 - EX31_RS03440 0.54 -0.5
177,973 - EX31_RS03440 0.54 +1.0
177,994 + EX31_RS03440 0.57 +1.7
177,994 + EX31_RS03440 0.57 -0.0
178,001 + EX31_RS03440 0.58 -0.9
178,002 - EX31_RS03440 0.58 -2.1
178,002 - EX31_RS03440 0.58 +0.4
178,004 + EX31_RS03440 0.58 +0.4
178,005 - EX31_RS03440 0.58 -0.7
178,005 - EX31_RS03440 0.58 -0.2
178,005 - EX31_RS03440 0.58 +0.6
178,070 + EX31_RS03440 0.66 +0.6
178,070 + EX31_RS03440 0.66 +0.6
178,071 - EX31_RS03440 0.66 +0.6
178,071 - EX31_RS03440 0.66 -0.1
178,117 + EX31_RS03440 0.71 +1.1
178,138 - EX31_RS03440 0.73 -0.2
178,169 - EX31_RS03440 0.77 -0.7
178,200 + EX31_RS03440 0.81 +0.0
178,200 + EX31_RS03440 0.81 +0.8
178,201 - EX31_RS03440 0.81 -1.0
178,201 - EX31_RS03440 0.81 +0.6
178,203 + EX31_RS03440 0.81 +0.4
178,203 + EX31_RS03440 0.81 +0.6
178,204 - EX31_RS03440 0.81 -0.4
178,204 - EX31_RS03440 0.81 +1.0
178,204 - EX31_RS03440 0.81 -1.1
178,216 + EX31_RS03440 0.82 -0.0
178,282 + +0.1
178,282 + -1.4
178,282 + -1.1
178,283 - -0.7
178,283 - +0.4
178,283 - -0.6
178,283 - -0.1
178,283 - -1.1
178,317 + -1.0
178,355 + -1.5
178,356 - -0.6
178,381 + +0.2
178,382 - -0.0
178,474 + EX31_RS03445 0.11 +0.3
178,474 + EX31_RS03445 0.11 +0.0
178,475 - EX31_RS03445 0.11 +0.3
178,475 - EX31_RS03445 0.11 +0.7
178,485 + EX31_RS03445 0.12 +0.2
178,485 + EX31_RS03445 0.12 -1.0
178,486 - EX31_RS03445 0.12 -1.1

Or see this region's nucleotide sequence