Strain Fitness in Rahnella sp. WP5 around EX31_RS02670

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02665 and EX31_RS02670 are separated by 128 nucleotidesEX31_RS02670 and EX31_RS02675 overlap by 1 nucleotidesEX31_RS02675 and EX31_RS02680 overlap by 10 nucleotides EX31_RS02665: EX31_RS02665 - glutathione synthase, at 6,227 to 7,177 _RS02665 EX31_RS02670: EX31_RS02670 - YqgE/AlgH family protein, at 7,306 to 7,869 _RS02670 EX31_RS02675: EX31_RS02675 - Holliday junction resolvase RuvX, at 7,869 to 8,297 _RS02675 EX31_RS02680: EX31_RS02680 - type IV pilus twitching motility protein PilT, at 8,288 to 9,310 _RS02680 Position (kb) 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.335 kb on + strand, within EX31_RS02665at 6.336 kb on - strand, within EX31_RS02665at 6.336 kb on - strand, within EX31_RS02665at 6.336 kb on - strand, within EX31_RS02665at 6.336 kb on - strand, within EX31_RS02665at 6.413 kb on + strand, within EX31_RS02665at 6.414 kb on - strand, within EX31_RS02665at 6.485 kb on - strand, within EX31_RS02665at 6.515 kb on + strand, within EX31_RS02665at 6.515 kb on + strand, within EX31_RS02665at 6.516 kb on - strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.524 kb on + strand, within EX31_RS02665at 6.525 kb on - strand, within EX31_RS02665at 6.525 kb on - strand, within EX31_RS02665at 6.525 kb on - strand, within EX31_RS02665at 6.525 kb on - strand, within EX31_RS02665at 6.525 kb on - strand, within EX31_RS02665at 6.525 kb on - strand, within EX31_RS02665at 6.568 kb on + strand, within EX31_RS02665at 6.592 kb on + strand, within EX31_RS02665at 6.824 kb on + strand, within EX31_RS02665at 6.824 kb on + strand, within EX31_RS02665at 6.825 kb on - strand, within EX31_RS02665at 7.045 kb on + strand, within EX31_RS02665at 7.072 kb on + strand, within EX31_RS02665at 7.175 kb on + strandat 7.175 kb on + strandat 7.176 kb on - strandat 7.176 kb on - strandat 7.186 kb on + strandat 7.186 kb on + strandat 7.187 kb on - strandat 7.249 kb on + strandat 7.249 kb on + strandat 7.249 kb on + strandat 7.249 kb on + strandat 7.252 kb on + strandat 7.253 kb on - strandat 7.289 kb on + strandat 7.289 kb on + strandat 7.302 kb on + strandat 7.313 kb on + strandat 7.378 kb on + strand, within EX31_RS02670at 7.378 kb on + strand, within EX31_RS02670at 7.378 kb on + strand, within EX31_RS02670at 7.378 kb on + strand, within EX31_RS02670at 7.378 kb on + strand, within EX31_RS02670at 7.770 kb on + strand, within EX31_RS02670at 8.620 kb on + strand, within EX31_RS02680at 8.621 kb on - strand, within EX31_RS02680at 8.621 kb on - strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.711 kb on + strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.712 kb on - strand, within EX31_RS02680at 8.764 kb on + strand, within EX31_RS02680at 8.765 kb on - strand, within EX31_RS02680at 8.765 kb on - strand, within EX31_RS02680at 8.765 kb on - strand, within EX31_RS02680at 8.809 kb on + strand, within EX31_RS02680at 8.810 kb on - strand, within EX31_RS02680at 8.842 kb on + strand, within EX31_RS02680at 8.842 kb on + strand, within EX31_RS02680at 8.842 kb on + strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.843 kb on - strand, within EX31_RS02680at 8.845 kb on + strand, within EX31_RS02680at 8.846 kb on - strand, within EX31_RS02680at 8.846 kb on - strand, within EX31_RS02680

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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6,335 + EX31_RS02665 0.11 -0.1
6,335 + EX31_RS02665 0.11 -0.3
6,335 + EX31_RS02665 0.11 +0.7
6,335 + EX31_RS02665 0.11 +0.7
6,335 + EX31_RS02665 0.11 -0.5
6,335 + EX31_RS02665 0.11 -0.1
6,335 + EX31_RS02665 0.11 -0.9
6,335 + EX31_RS02665 0.11 +1.1
6,335 + EX31_RS02665 0.11 +0.5
6,335 + EX31_RS02665 0.11 -0.9
6,336 - EX31_RS02665 0.11 +0.5
6,336 - EX31_RS02665 0.11 +1.7
6,336 - EX31_RS02665 0.11 -0.1
6,336 - EX31_RS02665 0.11 -0.2
6,413 + EX31_RS02665 0.20 +0.6
6,414 - EX31_RS02665 0.20 -0.2
6,485 - EX31_RS02665 0.27 -1.1
6,515 + EX31_RS02665 0.30 -1.7
6,515 + EX31_RS02665 0.30 -1.1
6,516 - EX31_RS02665 0.30 -2.9
6,524 + EX31_RS02665 0.31 +1.0
6,524 + EX31_RS02665 0.31 -1.4
6,524 + EX31_RS02665 0.31 +0.0
6,524 + EX31_RS02665 0.31 -1.1
6,524 + EX31_RS02665 0.31 -0.9
6,524 + EX31_RS02665 0.31 +0.6
6,524 + EX31_RS02665 0.31 -1.3
6,524 + EX31_RS02665 0.31 -2.0
6,524 + EX31_RS02665 0.31 -2.0
6,525 - EX31_RS02665 0.31 +0.6
6,525 - EX31_RS02665 0.31 -0.6
6,525 - EX31_RS02665 0.31 +1.7
6,525 - EX31_RS02665 0.31 -0.3
6,525 - EX31_RS02665 0.31 +0.4
6,525 - EX31_RS02665 0.31 -1.4
6,568 + EX31_RS02665 0.36 +0.4
6,592 + EX31_RS02665 0.38 -2.1
6,824 + EX31_RS02665 0.63 -2.9
6,824 + EX31_RS02665 0.63 +0.3
6,825 - EX31_RS02665 0.63 +0.8
7,045 + EX31_RS02665 0.86 -2.6
7,072 + EX31_RS02665 0.89 +0.4
7,175 + -0.2
7,175 + -0.6
7,176 - +0.2
7,176 - -0.4
7,186 + +0.4
7,186 + -0.1
7,187 - +0.3
7,249 + +0.2
7,249 + -2.4
7,249 + +1.0
7,249 + +0.2
7,252 + -0.2
7,253 - +0.1
7,289 + +1.3
7,289 + -0.3
7,302 + -0.1
7,313 + +0.1
7,378 + EX31_RS02670 0.13 -0.1
7,378 + EX31_RS02670 0.13 -1.2
7,378 + EX31_RS02670 0.13 +1.1
7,378 + EX31_RS02670 0.13 -0.9
7,378 + EX31_RS02670 0.13 -1.0
7,770 + EX31_RS02670 0.82 -1.4
8,620 + EX31_RS02680 0.32 -0.5
8,621 - EX31_RS02680 0.33 +0.6
8,621 - EX31_RS02680 0.33 +0.4
8,711 + EX31_RS02680 0.41 -0.8
8,711 + EX31_RS02680 0.41 -1.3
8,711 + EX31_RS02680 0.41 -1.1
8,711 + EX31_RS02680 0.41 +1.4
8,711 + EX31_RS02680 0.41 +0.3
8,711 + EX31_RS02680 0.41 +0.6
8,711 + EX31_RS02680 0.41 -0.8
8,711 + EX31_RS02680 0.41 +0.1
8,712 - EX31_RS02680 0.41 +1.0
8,712 - EX31_RS02680 0.41 -0.2
8,712 - EX31_RS02680 0.41 +0.2
8,712 - EX31_RS02680 0.41 -0.0
8,712 - EX31_RS02680 0.41 +0.5
8,712 - EX31_RS02680 0.41 +0.6
8,712 - EX31_RS02680 0.41 -0.1
8,712 - EX31_RS02680 0.41 -0.5
8,712 - EX31_RS02680 0.41 +0.4
8,712 - EX31_RS02680 0.41 -0.5
8,764 + EX31_RS02680 0.47 +0.2
8,765 - EX31_RS02680 0.47 +0.3
8,765 - EX31_RS02680 0.47 +0.3
8,765 - EX31_RS02680 0.47 -0.9
8,809 + EX31_RS02680 0.51 +1.1
8,810 - EX31_RS02680 0.51 +0.2
8,842 + EX31_RS02680 0.54 -0.8
8,842 + EX31_RS02680 0.54 +0.2
8,842 + EX31_RS02680 0.54 -0.3
8,843 - EX31_RS02680 0.54 +0.2
8,843 - EX31_RS02680 0.54 +0.3
8,843 - EX31_RS02680 0.54 +1.0
8,843 - EX31_RS02680 0.54 -0.2
8,843 - EX31_RS02680 0.54 +0.0
8,843 - EX31_RS02680 0.54 +0.3
8,843 - EX31_RS02680 0.54 +0.4
8,843 - EX31_RS02680 0.54 -0.6
8,843 - EX31_RS02680 0.54 -0.5
8,843 - EX31_RS02680 0.54 +0.4
8,845 + EX31_RS02680 0.54 +0.5
8,846 - EX31_RS02680 0.55 +0.7
8,846 - EX31_RS02680 0.55 +0.9

Or see this region's nucleotide sequence