Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02280 and EX31_RS02285 are separated by 127 nucleotides EX31_RS02285 and EX31_RS02290 are separated by 347 nucleotides
EX31_RS02280: EX31_RS02280 - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 492,224 to 493,582
_RS02280
EX31_RS02285: EX31_RS02285 - PTS sugar transporter subunit IIB, at 493,710 to 494,030
_RS02285
EX31_RS02290: EX31_RS02290 - LacI family DNA-binding transcriptional regulator, at 494,378 to 495,412
_RS02290
Position (kb) 493
494
495 Strain fitness (log2 ratio) -2
-1
0
1 at 492.762 kb on + strand, within EX31_RS02280 at 492.932 kb on - strand, within EX31_RS02280 at 492.932 kb on - strand, within EX31_RS02280 at 492.955 kb on - strand, within EX31_RS02280 at 492.956 kb on + strand, within EX31_RS02280 at 492.956 kb on + strand, within EX31_RS02280 at 492.957 kb on - strand, within EX31_RS02280 at 492.957 kb on - strand, within EX31_RS02280 at 492.957 kb on - strand, within EX31_RS02280 at 492.977 kb on - strand, within EX31_RS02280 at 493.118 kb on + strand, within EX31_RS02280 at 493.118 kb on + strand, within EX31_RS02280 at 493.119 kb on - strand, within EX31_RS02280 at 493.119 kb on - strand, within EX31_RS02280 at 493.119 kb on - strand, within EX31_RS02280 at 493.173 kb on + strand, within EX31_RS02280 at 493.174 kb on - strand, within EX31_RS02280 at 493.191 kb on + strand, within EX31_RS02280 at 493.191 kb on + strand, within EX31_RS02280 at 493.303 kb on + strand, within EX31_RS02280 at 493.303 kb on + strand, within EX31_RS02280 at 493.430 kb on + strand, within EX31_RS02280 at 493.436 kb on - strand, within EX31_RS02280 at 493.438 kb on + strand, within EX31_RS02280 at 493.522 kb on + strand at 493.550 kb on + strand at 493.550 kb on + strand at 493.586 kb on + strand at 493.587 kb on - strand at 493.761 kb on + strand, within EX31_RS02285 at 493.844 kb on + strand, within EX31_RS02285 at 493.844 kb on + strand, within EX31_RS02285 at 493.844 kb on + strand, within EX31_RS02285 at 493.845 kb on - strand, within EX31_RS02285 at 493.845 kb on - strand, within EX31_RS02285 at 493.847 kb on - strand, within EX31_RS02285 at 493.943 kb on - strand, within EX31_RS02285 at 493.967 kb on + strand, within EX31_RS02285 at 493.968 kb on - strand, within EX31_RS02285 at 494.011 kb on + strand at 494.033 kb on + strand at 494.033 kb on + strand at 494.034 kb on - strand at 494.097 kb on + strand at 494.097 kb on + strand at 494.098 kb on - strand at 494.151 kb on - strand at 494.151 kb on - strand at 494.186 kb on - strand at 494.186 kb on - strand at 494.242 kb on + strand at 494.259 kb on + strand at 494.259 kb on + strand at 494.259 kb on + strand at 494.260 kb on - strand at 494.264 kb on + strand at 494.264 kb on + strand at 494.265 kb on - strand at 494.300 kb on + strand at 494.306 kb on + strand at 494.307 kb on - strand at 494.325 kb on - strand at 494.554 kb on + strand, within EX31_RS02290 at 494.561 kb on + strand, within EX31_RS02290 at 494.561 kb on + strand, within EX31_RS02290 at 494.561 kb on + strand, within EX31_RS02290 at 494.561 kb on + strand, within EX31_RS02290 at 494.562 kb on - strand, within EX31_RS02290 at 494.572 kb on + strand, within EX31_RS02290 at 494.572 kb on + strand, within EX31_RS02290 at 494.636 kb on - strand, within EX31_RS02290 at 494.644 kb on + strand, within EX31_RS02290 at 494.644 kb on + strand, within EX31_RS02290 at 494.644 kb on + strand, within EX31_RS02290 at 494.644 kb on + strand, within EX31_RS02290 at 494.644 kb on + strand, within EX31_RS02290 at 494.645 kb on - strand, within EX31_RS02290 at 494.645 kb on - strand, within EX31_RS02290 at 494.645 kb on - strand, within EX31_RS02290 at 494.853 kb on + strand, within EX31_RS02290 at 494.887 kb on + strand, within EX31_RS02290 at 494.888 kb on - strand, within EX31_RS02290 at 494.971 kb on + strand, within EX31_RS02290 at 494.971 kb on + strand, within EX31_RS02290 at 494.972 kb on - strand, within EX31_RS02290
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 492,762 + EX31_RS02280 0.40 +0.9 492,932 - EX31_RS02280 0.52 +0.6 492,932 - EX31_RS02280 0.52 -0.1 492,955 - EX31_RS02280 0.54 +0.6 492,956 + EX31_RS02280 0.54 -2.0 492,956 + EX31_RS02280 0.54 +0.4 492,957 - EX31_RS02280 0.54 -0.6 492,957 - EX31_RS02280 0.54 +0.4 492,957 - EX31_RS02280 0.54 +0.9 492,977 - EX31_RS02280 0.55 -0.8 493,118 + EX31_RS02280 0.66 -0.2 493,118 + EX31_RS02280 0.66 -1.1 493,119 - EX31_RS02280 0.66 +0.2 493,119 - EX31_RS02280 0.66 +0.5 493,119 - EX31_RS02280 0.66 +0.0 493,173 + EX31_RS02280 0.70 +0.6 493,174 - EX31_RS02280 0.70 -1.3 493,191 + EX31_RS02280 0.71 -0.3 493,191 + EX31_RS02280 0.71 +0.2 493,303 + EX31_RS02280 0.79 -0.8 493,303 + EX31_RS02280 0.79 -0.6 493,430 + EX31_RS02280 0.89 -0.4 493,436 - EX31_RS02280 0.89 -0.5 493,438 + EX31_RS02280 0.89 -0.6 493,522 + +0.2 493,550 + +0.2 493,550 + +0.6 493,586 + +0.6 493,587 - +0.5 493,761 + EX31_RS02285 0.16 +0.6 493,844 + EX31_RS02285 0.42 -0.0 493,844 + EX31_RS02285 0.42 -0.3 493,844 + EX31_RS02285 0.42 -0.9 493,845 - EX31_RS02285 0.42 -0.8 493,845 - EX31_RS02285 0.42 -0.7 493,847 - EX31_RS02285 0.43 -0.7 493,943 - EX31_RS02285 0.73 +0.2 493,967 + EX31_RS02285 0.80 -2.0 493,968 - EX31_RS02285 0.80 +0.3 494,011 + +0.3 494,033 + +0.4 494,033 + +1.5 494,034 - +0.4 494,097 + -1.0 494,097 + +1.6 494,098 - +0.3 494,151 - +0.7 494,151 - +0.2 494,186 - +0.1 494,186 - +0.1 494,242 + -0.5 494,259 + -0.5 494,259 + +1.4 494,259 + +0.8 494,260 - +0.8 494,264 + -0.2 494,264 + -0.0 494,265 - -0.1 494,300 + +0.5 494,306 + -0.8 494,307 - -0.4 494,325 - -0.2 494,554 + EX31_RS02290 0.17 +0.2 494,561 + EX31_RS02290 0.18 +0.3 494,561 + EX31_RS02290 0.18 -0.2 494,561 + EX31_RS02290 0.18 -2.1 494,561 + EX31_RS02290 0.18 -0.1 494,562 - EX31_RS02290 0.18 +0.6 494,572 + EX31_RS02290 0.19 -1.4 494,572 + EX31_RS02290 0.19 -1.2 494,636 - EX31_RS02290 0.25 -0.6 494,644 + EX31_RS02290 0.26 -0.3 494,644 + EX31_RS02290 0.26 -0.8 494,644 + EX31_RS02290 0.26 -1.3 494,644 + EX31_RS02290 0.26 -0.2 494,644 + EX31_RS02290 0.26 +1.2 494,645 - EX31_RS02290 0.26 +0.3 494,645 - EX31_RS02290 0.26 -1.8 494,645 - EX31_RS02290 0.26 +1.0 494,853 + EX31_RS02290 0.46 -0.1 494,887 + EX31_RS02290 0.49 -1.4 494,888 - EX31_RS02290 0.49 -0.2 494,971 + EX31_RS02290 0.57 +0.3 494,971 + EX31_RS02290 0.57 -0.9 494,972 - EX31_RS02290 0.57 -0.3
Or see this region's nucleotide sequence