Strain Fitness in Rahnella sp. WP5 around EX31_RS01905

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01895 and EX31_RS01900 are separated by 51 nucleotidesEX31_RS01900 and EX31_RS01905 overlap by 4 nucleotidesEX31_RS01905 and EX31_RS01910 are separated by 46 nucleotides EX31_RS01895: EX31_RS01895 - type VI secretion system tip protein VgrG, at 410,821 to 413,367 _RS01895 EX31_RS01900: EX31_RS01900 - hypothetical protein, at 413,419 to 413,703 _RS01900 EX31_RS01905: EX31_RS01905 - hypothetical protein, at 413,700 to 414,128 _RS01905 EX31_RS01910: EX31_RS01910 - lipase family protein, at 414,175 to 416,124 _RS01910 Position (kb) 413 414 415Strain fitness (log2 ratio) -2 -1 0 1 2at 412.716 kb on + strand, within EX31_RS01895at 412.766 kb on + strand, within EX31_RS01895at 412.767 kb on - strand, within EX31_RS01895at 412.822 kb on - strand, within EX31_RS01895at 412.823 kb on + strand, within EX31_RS01895at 412.823 kb on + strand, within EX31_RS01895at 412.823 kb on + strand, within EX31_RS01895at 412.823 kb on + strand, within EX31_RS01895at 412.823 kb on + strand, within EX31_RS01895at 412.824 kb on - strand, within EX31_RS01895at 412.824 kb on - strand, within EX31_RS01895at 412.824 kb on - strand, within EX31_RS01895at 412.824 kb on - strand, within EX31_RS01895at 412.833 kb on + strand, within EX31_RS01895at 412.866 kb on - strand, within EX31_RS01895at 412.871 kb on + strand, within EX31_RS01895at 412.871 kb on + strand, within EX31_RS01895at 412.872 kb on - strand, within EX31_RS01895at 412.872 kb on - strand, within EX31_RS01895at 413.028 kb on + strand, within EX31_RS01895at 413.029 kb on - strand, within EX31_RS01895at 413.029 kb on - strand, within EX31_RS01895at 413.044 kb on + strand, within EX31_RS01895at 413.170 kb on + strandat 413.171 kb on - strandat 413.172 kb on + strandat 413.172 kb on + strandat 413.190 kb on - strandat 413.299 kb on - strandat 413.300 kb on + strandat 413.301 kb on - strandat 413.316 kb on + strandat 413.323 kb on - strandat 413.331 kb on - strandat 413.381 kb on + strandat 413.381 kb on + strandat 413.382 kb on - strandat 413.386 kb on + strandat 413.387 kb on - strandat 413.387 kb on - strandat 413.392 kb on + strandat 413.485 kb on + strand, within EX31_RS01900at 413.487 kb on + strand, within EX31_RS01900at 413.488 kb on - strand, within EX31_RS01900at 413.493 kb on + strand, within EX31_RS01900at 413.493 kb on + strand, within EX31_RS01900at 413.493 kb on + strand, within EX31_RS01900at 413.526 kb on + strand, within EX31_RS01900at 413.526 kb on + strand, within EX31_RS01900at 413.527 kb on - strand, within EX31_RS01900at 413.527 kb on - strand, within EX31_RS01900at 413.626 kb on - strand, within EX31_RS01900at 413.679 kb on + strandat 413.679 kb on + strandat 413.680 kb on - strandat 413.787 kb on - strand, within EX31_RS01905at 413.792 kb on - strand, within EX31_RS01905at 413.906 kb on + strand, within EX31_RS01905at 413.907 kb on - strand, within EX31_RS01905at 413.930 kb on + strand, within EX31_RS01905at 414.044 kb on + strand, within EX31_RS01905at 414.044 kb on + strand, within EX31_RS01905at 414.085 kb on + strand, within EX31_RS01905at 414.096 kb on + strandat 414.226 kb on + strandat 414.226 kb on + strandat 414.226 kb on + strandat 414.226 kb on + strandat 414.227 kb on - strandat 414.227 kb on - strandat 414.227 kb on - strandat 414.260 kb on + strandat 414.298 kb on - strandat 414.386 kb on + strand, within EX31_RS01910at 414.411 kb on - strand, within EX31_RS01910at 414.492 kb on + strand, within EX31_RS01910at 414.492 kb on + strand, within EX31_RS01910at 414.493 kb on - strand, within EX31_RS01910at 414.796 kb on - strand, within EX31_RS01910at 414.798 kb on + strand, within EX31_RS01910at 414.799 kb on - strand, within EX31_RS01910at 414.817 kb on - strand, within EX31_RS01910at 414.817 kb on - strand, within EX31_RS01910at 414.869 kb on + strand, within EX31_RS01910at 414.883 kb on + strand, within EX31_RS01910at 414.946 kb on - strand, within EX31_RS01910at 414.998 kb on + strand, within EX31_RS01910at 415.000 kb on + strand, within EX31_RS01910at 415.000 kb on + strand, within EX31_RS01910at 415.001 kb on - strand, within EX31_RS01910at 415.001 kb on - strand, within EX31_RS01910

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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412,716 + EX31_RS01895 0.74 +1.0
412,766 + EX31_RS01895 0.76 -2.0
412,767 - EX31_RS01895 0.76 +0.6
412,822 - EX31_RS01895 0.79 -0.3
412,823 + EX31_RS01895 0.79 +0.4
412,823 + EX31_RS01895 0.79 -0.1
412,823 + EX31_RS01895 0.79 +1.0
412,823 + EX31_RS01895 0.79 -1.1
412,823 + EX31_RS01895 0.79 +0.4
412,824 - EX31_RS01895 0.79 -1.5
412,824 - EX31_RS01895 0.79 -2.0
412,824 - EX31_RS01895 0.79 -1.7
412,824 - EX31_RS01895 0.79 +0.2
412,833 + EX31_RS01895 0.79 +1.0
412,866 - EX31_RS01895 0.80 +0.3
412,871 + EX31_RS01895 0.80 -1.3
412,871 + EX31_RS01895 0.80 -0.7
412,872 - EX31_RS01895 0.81 -0.2
412,872 - EX31_RS01895 0.81 +0.2
413,028 + EX31_RS01895 0.87 -1.0
413,029 - EX31_RS01895 0.87 -0.2
413,029 - EX31_RS01895 0.87 +0.5
413,044 + EX31_RS01895 0.87 +1.4
413,170 + +1.0
413,171 - -0.4
413,172 + +1.5
413,172 + -0.1
413,190 - -0.4
413,299 - +1.1
413,300 + +1.3
413,301 - -0.6
413,316 + -1.6
413,323 - -0.5
413,331 - +0.9
413,381 + +1.0
413,381 + -0.1
413,382 - -0.6
413,386 + +1.1
413,387 - +0.1
413,387 - -0.2
413,392 + -0.3
413,485 + EX31_RS01900 0.23 -0.6
413,487 + EX31_RS01900 0.24 +0.4
413,488 - EX31_RS01900 0.24 +0.6
413,493 + EX31_RS01900 0.26 -1.4
413,493 + EX31_RS01900 0.26 -1.5
413,493 + EX31_RS01900 0.26 +0.8
413,526 + EX31_RS01900 0.38 +0.9
413,526 + EX31_RS01900 0.38 +0.8
413,527 - EX31_RS01900 0.38 +0.6
413,527 - EX31_RS01900 0.38 +0.5
413,626 - EX31_RS01900 0.73 -0.4
413,679 + -1.2
413,679 + +0.3
413,680 - -0.3
413,787 - EX31_RS01905 0.20 +0.9
413,792 - EX31_RS01905 0.21 +1.2
413,906 + EX31_RS01905 0.48 +0.4
413,907 - EX31_RS01905 0.48 +0.1
413,930 + EX31_RS01905 0.54 -0.0
414,044 + EX31_RS01905 0.80 +0.6
414,044 + EX31_RS01905 0.80 +0.5
414,085 + EX31_RS01905 0.90 -0.8
414,096 + +0.7
414,226 + +0.6
414,226 + +0.6
414,226 + +1.0
414,226 + -1.2
414,227 - -0.2
414,227 - -0.2
414,227 - -0.4
414,260 + -0.1
414,298 - -0.4
414,386 + EX31_RS01910 0.11 -0.7
414,411 - EX31_RS01910 0.12 -0.6
414,492 + EX31_RS01910 0.16 +1.0
414,492 + EX31_RS01910 0.16 +0.7
414,493 - EX31_RS01910 0.16 +0.7
414,796 - EX31_RS01910 0.32 +0.6
414,798 + EX31_RS01910 0.32 +1.3
414,799 - EX31_RS01910 0.32 -1.9
414,817 - EX31_RS01910 0.33 +0.2
414,817 - EX31_RS01910 0.33 +0.6
414,869 + EX31_RS01910 0.36 +1.1
414,883 + EX31_RS01910 0.36 +0.1
414,946 - EX31_RS01910 0.40 +0.1
414,998 + EX31_RS01910 0.42 -0.3
415,000 + EX31_RS01910 0.42 +0.8
415,000 + EX31_RS01910 0.42 +0.1
415,001 - EX31_RS01910 0.42 +2.2
415,001 - EX31_RS01910 0.42 -1.1

Or see this region's nucleotide sequence