Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01260 and EX31_RS01265 are separated by 202 nucleotides EX31_RS01265 and EX31_RS01270 are separated by 115 nucleotides EX31_RS01270 and EX31_RS01275 are separated by 114 nucleotides
EX31_RS01260: EX31_RS01260 - YebG family protein, at 281,304 to 281,699
_RS01260
EX31_RS01265: EX31_RS01265 - GNAT family N-acetyltransferase, at 281,902 to 282,357
_RS01265
EX31_RS01270: EX31_RS01270 - LysR family transcriptional regulator, at 282,473 to 283,348
_RS01270
EX31_RS01275: EX31_RS01275 - acyltransferase, at 283,463 to 284,452
_RS01275
Position (kb) 282
283
284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.489 kb on + strand, within EX31_RS01260 at 281.572 kb on - strand, within EX31_RS01260 at 281.617 kb on + strand, within EX31_RS01260 at 281.714 kb on - strand at 281.754 kb on - strand at 281.804 kb on + strand at 281.805 kb on - strand at 281.805 kb on - strand at 281.805 kb on - strand at 281.805 kb on - strand at 281.816 kb on + strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.817 kb on - strand at 281.935 kb on + strand at 281.935 kb on + strand at 281.935 kb on + strand at 281.935 kb on + strand at 281.936 kb on - strand at 281.936 kb on - strand at 282.145 kb on + strand, within EX31_RS01265 at 282.145 kb on + strand, within EX31_RS01265 at 282.146 kb on - strand, within EX31_RS01265 at 282.146 kb on - strand, within EX31_RS01265 at 282.146 kb on - strand, within EX31_RS01265 at 282.246 kb on + strand, within EX31_RS01265 at 282.247 kb on - strand, within EX31_RS01265 at 282.247 kb on - strand, within EX31_RS01265 at 282.307 kb on + strand, within EX31_RS01265 at 282.474 kb on + strand at 282.474 kb on + strand at 282.474 kb on + strand at 282.474 kb on + strand at 282.474 kb on + strand at 282.475 kb on - strand at 282.475 kb on - strand at 282.475 kb on - strand at 282.475 kb on - strand at 282.476 kb on + strand at 282.478 kb on + strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.479 kb on - strand at 282.524 kb on - strand at 282.686 kb on - strand, within EX31_RS01270 at 282.686 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.787 kb on - strand, within EX31_RS01270 at 282.798 kb on - strand, within EX31_RS01270 at 283.024 kb on + strand, within EX31_RS01270 at 283.115 kb on - strand, within EX31_RS01270 at 283.136 kb on + strand, within EX31_RS01270 at 283.137 kb on - strand, within EX31_RS01270 at 283.296 kb on + strand at 283.297 kb on - strand at 283.356 kb on - strand at 283.393 kb on - strand at 283.451 kb on - strand at 283.451 kb on - strand at 283.531 kb on + strand at 283.585 kb on + strand, within EX31_RS01275 at 283.609 kb on + strand, within EX31_RS01275 at 283.609 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.775 kb on + strand, within EX31_RS01275 at 283.776 kb on - strand, within EX31_RS01275 at 283.776 kb on - strand, within EX31_RS01275 at 283.776 kb on - strand, within EX31_RS01275 at 283.777 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.871 kb on + strand, within EX31_RS01275 at 283.872 kb on - strand, within EX31_RS01275 at 283.872 kb on - strand, within EX31_RS01275 at 283.980 kb on + strand, within EX31_RS01275 at 284.099 kb on - strand, within EX31_RS01275 at 284.208 kb on + strand, within EX31_RS01275 at 284.208 kb on + strand, within EX31_RS01275
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 281,489 + EX31_RS01260 0.47 +0.9 281,572 - EX31_RS01260 0.68 -0.1 281,617 + EX31_RS01260 0.79 -0.4 281,714 - -0.0 281,754 - +0.9 281,804 + -0.5 281,805 - -1.0 281,805 - -0.1 281,805 - -0.1 281,805 - -0.0 281,816 + +0.0 281,817 - +1.0 281,817 - +0.6 281,817 - -0.1 281,817 - +0.4 281,817 - +0.5 281,935 + -0.1 281,935 + -0.9 281,935 + +0.3 281,935 + -0.7 281,936 - -0.7 281,936 - +2.6 282,145 + EX31_RS01265 0.53 +1.3 282,145 + EX31_RS01265 0.53 -0.9 282,146 - EX31_RS01265 0.54 -0.5 282,146 - EX31_RS01265 0.54 -1.0 282,146 - EX31_RS01265 0.54 -0.2 282,246 + EX31_RS01265 0.75 -0.1 282,247 - EX31_RS01265 0.76 +0.3 282,247 - EX31_RS01265 0.76 -0.9 282,307 + EX31_RS01265 0.89 +0.2 282,474 + -0.1 282,474 + -0.8 282,474 + +1.5 282,474 + -1.0 282,474 + +1.2 282,475 - +0.2 282,475 - +0.2 282,475 - -0.2 282,475 - -1.3 282,476 + +1.3 282,478 + +0.9 282,479 - -0.2 282,479 - +0.5 282,479 - +0.4 282,479 - -0.8 282,479 - -0.1 282,479 - +1.3 282,479 - -2.3 282,524 - +0.7 282,686 - EX31_RS01270 0.24 -0.6 282,686 - EX31_RS01270 0.24 -0.5 282,787 - EX31_RS01270 0.36 -1.6 282,787 - EX31_RS01270 0.36 -1.1 282,787 - EX31_RS01270 0.36 -0.3 282,787 - EX31_RS01270 0.36 -0.1 282,787 - EX31_RS01270 0.36 -0.3 282,787 - EX31_RS01270 0.36 -0.1 282,798 - EX31_RS01270 0.37 -0.5 283,024 + EX31_RS01270 0.63 +0.3 283,115 - EX31_RS01270 0.73 -0.6 283,136 + EX31_RS01270 0.76 -0.6 283,137 - EX31_RS01270 0.76 -0.5 283,296 + -1.5 283,297 - +0.2 283,356 - -0.8 283,393 - +0.1 283,451 - -1.0 283,451 - -1.1 283,531 + +0.5 283,585 + EX31_RS01275 0.12 -0.2 283,609 + EX31_RS01275 0.15 -2.3 283,609 + EX31_RS01275 0.15 -1.3 283,775 + EX31_RS01275 0.32 +0.5 283,775 + EX31_RS01275 0.32 +1.0 283,775 + EX31_RS01275 0.32 -0.9 283,775 + EX31_RS01275 0.32 +0.3 283,775 + EX31_RS01275 0.32 -1.3 283,775 + EX31_RS01275 0.32 +1.0 283,775 + EX31_RS01275 0.32 -0.6 283,775 + EX31_RS01275 0.32 +0.9 283,775 + EX31_RS01275 0.32 +0.6 283,775 + EX31_RS01275 0.32 +1.5 283,776 - EX31_RS01275 0.32 -0.6 283,776 - EX31_RS01275 0.32 +0.2 283,776 - EX31_RS01275 0.32 -0.1 283,777 + EX31_RS01275 0.32 +0.1 283,871 + EX31_RS01275 0.41 +0.5 283,871 + EX31_RS01275 0.41 +0.4 283,871 + EX31_RS01275 0.41 -1.6 283,871 + EX31_RS01275 0.41 -0.8 283,872 - EX31_RS01275 0.41 +2.7 283,872 - EX31_RS01275 0.41 +0.4 283,980 + EX31_RS01275 0.52 -0.4 284,099 - EX31_RS01275 0.64 -1.0 284,208 + EX31_RS01275 0.75 -0.2 284,208 + EX31_RS01275 0.75 +2.6
Or see this region's nucleotide sequence