Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00325 and EX31_RS25025 are separated by 198 nucleotides EX31_RS25025 and EX31_RS00330 are separated by 212 nucleotides EX31_RS00330 and EX31_RS00335 are separated by 97 nucleotides EX31_RS00335 and EX31_RS00340 are separated by 39 nucleotides
EX31_RS00325: EX31_RS00325 - hypothetical protein, at 68,339 to 68,983
_RS00325
EX31_RS25025: EX31_RS25025 - DUF1272 domain-containing protein, at 69,182 to 69,421
_RS25025
EX31_RS00330: EX31_RS00330 - drug:proton antiporter, at 69,634 to 70,005
_RS00330
EX31_RS00335: EX31_RS00335 - YafY family transcriptional regulator, at 70,103 to 70,792
_RS00335
EX31_RS00340: EX31_RS00340 - MFS transporter, at 70,832 to 72,253
_RS00340
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 68.748 kb on + strand, within EX31_RS00325 at 68.748 kb on + strand, within EX31_RS00325 at 68.748 kb on + strand, within EX31_RS00325 at 68.748 kb on + strand, within EX31_RS00325 at 68.748 kb on + strand, within EX31_RS00325 at 68.748 kb on + strand, within EX31_RS00325 at 68.748 kb on + strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.749 kb on - strand, within EX31_RS00325 at 68.778 kb on + strand, within EX31_RS00325 at 68.779 kb on - strand, within EX31_RS00325 at 68.781 kb on + strand, within EX31_RS00325 at 68.781 kb on + strand, within EX31_RS00325 at 68.782 kb on - strand, within EX31_RS00325 at 68.782 kb on - strand, within EX31_RS00325 at 68.782 kb on - strand, within EX31_RS00325 at 68.782 kb on - strand, within EX31_RS00325 at 68.804 kb on - strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.867 kb on + strand, within EX31_RS00325 at 68.868 kb on - strand, within EX31_RS00325 at 68.868 kb on - strand, within EX31_RS00325 at 68.868 kb on - strand, within EX31_RS00325 at 68.868 kb on - strand, within EX31_RS00325 at 68.868 kb on - strand, within EX31_RS00325 at 68.868 kb on - strand, within EX31_RS00325 at 68.868 kb on - strand, within EX31_RS00325 at 68.897 kb on + strand, within EX31_RS00325 at 68.898 kb on - strand, within EX31_RS00325 at 68.997 kb on - strand at 68.997 kb on - strand at 69.029 kb on + strand at 69.063 kb on + strand at 69.064 kb on - strand at 69.064 kb on - strand at 69.091 kb on + strand at 69.091 kb on + strand at 69.091 kb on + strand at 69.091 kb on + strand at 69.092 kb on - strand at 69.092 kb on - strand at 69.092 kb on - strand at 69.093 kb on + strand at 69.094 kb on - strand at 69.094 kb on - strand at 69.094 kb on - strand at 69.094 kb on - strand at 69.094 kb on - strand at 69.106 kb on - strand at 69.106 kb on - strand at 69.184 kb on - strand at 69.184 kb on - strand at 69.184 kb on - strand at 69.206 kb on - strand, within EX31_RS25025 at 69.210 kb on - strand, within EX31_RS25025 at 69.210 kb on - strand, within EX31_RS25025 at 69.219 kb on - strand, within EX31_RS25025 at 69.296 kb on + strand, within EX31_RS25025 at 69.421 kb on + strand at 69.421 kb on + strand at 69.421 kb on + strand at 69.421 kb on + strand at 69.442 kb on - strand at 69.489 kb on - strand at 69.489 kb on - strand at 69.494 kb on + strand at 69.495 kb on - strand at 69.654 kb on - strand at 69.697 kb on - strand, within EX31_RS00330 at 69.699 kb on - strand, within EX31_RS00330 at 69.731 kb on - strand, within EX31_RS00330 at 69.731 kb on - strand, within EX31_RS00330 at 69.822 kb on - strand, within EX31_RS00330 at 69.847 kb on - strand, within EX31_RS00330 at 69.847 kb on - strand, within EX31_RS00330 at 69.945 kb on - strand, within EX31_RS00330 at 69.977 kb on + strand at 69.985 kb on - strand at 69.985 kb on - strand at 69.985 kb on - strand at 70.051 kb on - strand at 70.057 kb on + strand at 70.062 kb on + strand at 70.063 kb on - strand at 70.063 kb on - strand at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.253 kb on + strand, within EX31_RS00335 at 70.272 kb on + strand, within EX31_RS00335 at 70.273 kb on - strand, within EX31_RS00335 at 70.345 kb on + strand, within EX31_RS00335 at 70.358 kb on - strand, within EX31_RS00335 at 70.424 kb on + strand, within EX31_RS00335 at 70.424 kb on + strand, within EX31_RS00335 at 70.425 kb on - strand, within EX31_RS00335 at 70.425 kb on - strand, within EX31_RS00335 at 70.425 kb on - strand, within EX31_RS00335 at 70.523 kb on - strand, within EX31_RS00335 at 70.523 kb on - strand, within EX31_RS00335 at 70.615 kb on + strand, within EX31_RS00335 at 70.615 kb on + strand, within EX31_RS00335 at 70.616 kb on - strand, within EX31_RS00335 at 70.616 kb on - strand, within EX31_RS00335 at 70.764 kb on - strand at 70.764 kb on - strand at 70.764 kb on - strand at 70.799 kb on - strand at 70.799 kb on - strand at 70.806 kb on + strand at 70.806 kb on + strand at 70.806 kb on + strand at 70.806 kb on + strand at 70.807 kb on - strand at 70.807 kb on - strand at 70.811 kb on - strand at 70.817 kb on + strand at 70.822 kb on - strand at 70.824 kb on + strand at 70.824 kb on + strand at 70.825 kb on - strand at 70.825 kb on - strand at 70.825 kb on - strand at 70.884 kb on - strand at 70.953 kb on - strand at 70.971 kb on + strand at 70.971 kb on + strand at 70.971 kb on + strand at 70.972 kb on - strand at 70.972 kb on - strand at 70.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 68,748 + EX31_RS00325 0.63 +0.3 68,748 + EX31_RS00325 0.63 +1.0 68,748 + EX31_RS00325 0.63 -3.2 68,748 + EX31_RS00325 0.63 -0.5 68,748 + EX31_RS00325 0.63 +0.1 68,748 + EX31_RS00325 0.63 +0.2 68,748 + EX31_RS00325 0.63 +0.7 68,749 - EX31_RS00325 0.64 -0.2 68,749 - EX31_RS00325 0.64 +0.4 68,749 - EX31_RS00325 0.64 +0.3 68,749 - EX31_RS00325 0.64 -0.1 68,749 - EX31_RS00325 0.64 +0.6 68,749 - EX31_RS00325 0.64 -0.0 68,749 - EX31_RS00325 0.64 +0.4 68,749 - EX31_RS00325 0.64 -0.0 68,749 - EX31_RS00325 0.64 +0.1 68,778 + EX31_RS00325 0.68 -0.7 68,779 - EX31_RS00325 0.68 -0.3 68,781 + EX31_RS00325 0.69 -0.1 68,781 + EX31_RS00325 0.69 +0.5 68,782 - EX31_RS00325 0.69 +0.4 68,782 - EX31_RS00325 0.69 -0.1 68,782 - EX31_RS00325 0.69 -0.2 68,782 - EX31_RS00325 0.69 -0.8 68,804 - EX31_RS00325 0.72 +0.8 68,867 + EX31_RS00325 0.82 -0.0 68,867 + EX31_RS00325 0.82 +0.1 68,867 + EX31_RS00325 0.82 -0.6 68,867 + EX31_RS00325 0.82 +1.2 68,867 + EX31_RS00325 0.82 -0.8 68,867 + EX31_RS00325 0.82 -0.9 68,867 + EX31_RS00325 0.82 +0.2 68,867 + EX31_RS00325 0.82 +0.3 68,867 + EX31_RS00325 0.82 +0.7 68,867 + EX31_RS00325 0.82 +1.9 68,868 - EX31_RS00325 0.82 +0.5 68,868 - EX31_RS00325 0.82 -0.2 68,868 - EX31_RS00325 0.82 -1.7 68,868 - EX31_RS00325 0.82 +1.2 68,868 - EX31_RS00325 0.82 +0.1 68,868 - EX31_RS00325 0.82 -1.1 68,868 - EX31_RS00325 0.82 -0.9 68,897 + EX31_RS00325 0.87 -0.0 68,898 - EX31_RS00325 0.87 -0.3 68,997 - -0.7 68,997 - +0.4 69,029 + -0.8 69,063 + +0.9 69,064 - -0.0 69,064 - +0.5 69,091 + +0.1 69,091 + +0.2 69,091 + -0.2 69,091 + +1.0 69,092 - -1.4 69,092 - +0.7 69,092 - +0.2 69,093 + -0.0 69,094 - +0.2 69,094 - +0.1 69,094 - +0.9 69,094 - +0.2 69,094 - +0.3 69,106 - -0.6 69,106 - +0.6 69,184 - -1.4 69,184 - +0.1 69,184 - +1.6 69,206 - EX31_RS25025 0.10 +0.8 69,210 - EX31_RS25025 0.12 -1.0 69,210 - EX31_RS25025 0.12 +1.1 69,219 - EX31_RS25025 0.15 -0.4 69,296 + EX31_RS25025 0.47 +0.1 69,421 + -0.1 69,421 + -1.2 69,421 + -0.6 69,421 + -0.8 69,442 - +0.3 69,489 - +0.8 69,489 - +1.1 69,494 + -0.2 69,495 - -0.7 69,654 - +0.1 69,697 - EX31_RS00330 0.17 +1.0 69,699 - EX31_RS00330 0.17 +0.1 69,731 - EX31_RS00330 0.26 -0.7 69,731 - EX31_RS00330 0.26 +0.0 69,822 - EX31_RS00330 0.51 -1.4 69,847 - EX31_RS00330 0.57 -0.9 69,847 - EX31_RS00330 0.57 -0.5 69,945 - EX31_RS00330 0.84 +0.1 69,977 + -0.6 69,985 - +0.0 69,985 - -0.1 69,985 - +1.2 70,051 - -0.3 70,057 + -0.3 70,062 + -0.7 70,063 - -0.2 70,063 - +0.2 70,196 - EX31_RS00335 0.13 -1.3 70,196 - EX31_RS00335 0.13 -0.7 70,196 - EX31_RS00335 0.13 +0.5 70,196 - EX31_RS00335 0.13 +0.7 70,196 - EX31_RS00335 0.13 +0.6 70,196 - EX31_RS00335 0.13 +0.3 70,196 - EX31_RS00335 0.13 +0.6 70,196 - EX31_RS00335 0.13 -0.2 70,196 - EX31_RS00335 0.13 -0.3 70,196 - EX31_RS00335 0.13 -0.1 70,196 - EX31_RS00335 0.13 -0.2 70,196 - EX31_RS00335 0.13 -0.3 70,196 - EX31_RS00335 0.13 -0.2 70,196 - EX31_RS00335 0.13 +1.1 70,196 - EX31_RS00335 0.13 +0.6 70,253 + EX31_RS00335 0.22 +1.0 70,272 + EX31_RS00335 0.24 +0.5 70,273 - EX31_RS00335 0.25 +1.2 70,345 + EX31_RS00335 0.35 -2.0 70,358 - EX31_RS00335 0.37 -1.1 70,424 + EX31_RS00335 0.47 +0.4 70,424 + EX31_RS00335 0.47 -0.5 70,425 - EX31_RS00335 0.47 -0.4 70,425 - EX31_RS00335 0.47 -1.2 70,425 - EX31_RS00335 0.47 -0.5 70,523 - EX31_RS00335 0.61 -1.5 70,523 - EX31_RS00335 0.61 +0.7 70,615 + EX31_RS00335 0.74 +0.2 70,615 + EX31_RS00335 0.74 -0.8 70,616 - EX31_RS00335 0.74 +1.2 70,616 - EX31_RS00335 0.74 -1.3 70,764 - -0.2 70,764 - +0.4 70,764 - -0.2 70,799 - +0.5 70,799 - +0.6 70,806 + +0.7 70,806 + +0.4 70,806 + +0.9 70,806 + +0.2 70,807 - -0.3 70,807 - -0.1 70,811 - -0.5 70,817 + -3.3 70,822 - +0.1 70,824 + -0.2 70,824 + +1.3 70,825 - +0.6 70,825 - +0.4 70,825 - -0.8 70,884 - -0.8 70,953 - +0.5 70,971 + +0.4 70,971 + +0.6 70,971 + +0.6 70,972 - -0.9 70,972 - +0.4 70,972 - -2.0
Or see this region's nucleotide sequence