Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00105 and EX31_RS00110 are separated by 23 nucleotides EX31_RS00110 and EX31_RS00115 are separated by 88 nucleotides EX31_RS00115 and EX31_RS00120 overlap by 8 nucleotides
EX31_RS00105: EX31_RS00105 - ABC transporter permease, at 23,201 to 24,466
_RS00105
EX31_RS00110: EX31_RS00110 - ABC transporter permease, at 24,490 to 25,317
_RS00110
EX31_RS00115: EX31_RS00115 - SDR family oxidoreductase, at 25,406 to 26,149
_RS00115
EX31_RS00120: EX31_RS00120 - phosphotransferase, at 26,142 to 27,191
_RS00120
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 24.413 kb on + strand at 24.413 kb on + strand at 24.413 kb on + strand at 24.413 kb on + strand at 24.414 kb on - strand at 24.422 kb on + strand at 24.422 kb on + strand at 24.423 kb on - strand at 24.442 kb on + strand at 24.659 kb on - strand, within EX31_RS00110 at 24.901 kb on + strand, within EX31_RS00110 at 24.901 kb on + strand, within EX31_RS00110 at 24.901 kb on + strand, within EX31_RS00110 at 24.902 kb on - strand, within EX31_RS00110 at 25.034 kb on + strand, within EX31_RS00110 at 25.047 kb on + strand, within EX31_RS00110 at 25.047 kb on + strand, within EX31_RS00110 at 25.130 kb on + strand, within EX31_RS00110 at 25.341 kb on - strand at 25.570 kb on + strand, within EX31_RS00115 at 25.571 kb on - strand, within EX31_RS00115 at 25.672 kb on + strand, within EX31_RS00115 at 25.673 kb on - strand, within EX31_RS00115 at 25.830 kb on + strand, within EX31_RS00115 at 25.877 kb on + strand, within EX31_RS00115 at 25.877 kb on + strand, within EX31_RS00115 at 25.877 kb on + strand, within EX31_RS00115 at 25.878 kb on - strand, within EX31_RS00115 at 25.878 kb on - strand, within EX31_RS00115 at 25.888 kb on + strand, within EX31_RS00115 at 25.954 kb on - strand, within EX31_RS00115 at 25.981 kb on + strand, within EX31_RS00115 at 26.102 kb on + strand at 26.102 kb on + strand at 26.102 kb on + strand at 26.103 kb on - strand at 26.103 kb on - strand at 26.121 kb on + strand at 26.121 kb on + strand at 26.121 kb on + strand at 26.122 kb on - strand at 26.122 kb on - strand at 26.208 kb on - strand at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.304 kb on + strand, within EX31_RS00120 at 26.305 kb on - strand, within EX31_RS00120 at 26.490 kb on + strand, within EX31_RS00120 at 26.490 kb on + strand, within EX31_RS00120 at 26.490 kb on + strand, within EX31_RS00120 at 26.491 kb on - strand, within EX31_RS00120 at 26.591 kb on + strand, within EX31_RS00120 at 26.929 kb on - strand, within EX31_RS00120 at 26.952 kb on + strand, within EX31_RS00120 at 26.954 kb on + strand, within EX31_RS00120 at 27.079 kb on - strand, within EX31_RS00120 at 27.079 kb on - strand, within EX31_RS00120 at 27.080 kb on + strand, within EX31_RS00120 at 27.080 kb on + strand, within EX31_RS00120 at 27.081 kb on - strand, within EX31_RS00120
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 24,413 + -0.0 24,413 + +0.2 24,413 + -1.4 24,413 + -0.5 24,414 - +0.1 24,422 + +0.2 24,422 + +0.4 24,423 - +0.9 24,442 + -0.2 24,659 - EX31_RS00110 0.20 -0.3 24,901 + EX31_RS00110 0.50 +1.1 24,901 + EX31_RS00110 0.50 -1.8 24,901 + EX31_RS00110 0.50 -0.6 24,902 - EX31_RS00110 0.50 -0.0 25,034 + EX31_RS00110 0.66 -0.5 25,047 + EX31_RS00110 0.67 -0.5 25,047 + EX31_RS00110 0.67 -1.3 25,130 + EX31_RS00110 0.77 -0.4 25,341 - +1.1 25,570 + EX31_RS00115 0.22 -1.0 25,571 - EX31_RS00115 0.22 -0.9 25,672 + EX31_RS00115 0.36 -2.7 25,673 - EX31_RS00115 0.36 -0.2 25,830 + EX31_RS00115 0.57 -0.5 25,877 + EX31_RS00115 0.63 -0.2 25,877 + EX31_RS00115 0.63 +0.0 25,877 + EX31_RS00115 0.63 +0.3 25,878 - EX31_RS00115 0.63 +1.7 25,878 - EX31_RS00115 0.63 -0.4 25,888 + EX31_RS00115 0.65 -0.2 25,954 - EX31_RS00115 0.74 -0.5 25,981 + EX31_RS00115 0.77 -0.8 26,102 + +1.0 26,102 + -0.3 26,102 + -1.1 26,103 - +0.5 26,103 - +0.8 26,121 + -0.3 26,121 + +0.3 26,121 + -0.6 26,122 - -1.2 26,122 - -0.5 26,208 - +0.0 26,304 + EX31_RS00120 0.15 -0.3 26,304 + EX31_RS00120 0.15 +1.1 26,304 + EX31_RS00120 0.15 -0.4 26,304 + EX31_RS00120 0.15 -0.0 26,304 + EX31_RS00120 0.15 +0.5 26,305 - EX31_RS00120 0.16 +0.6 26,490 + EX31_RS00120 0.33 -0.8 26,490 + EX31_RS00120 0.33 -1.9 26,490 + EX31_RS00120 0.33 +0.6 26,491 - EX31_RS00120 0.33 +0.4 26,591 + EX31_RS00120 0.43 -1.9 26,929 - EX31_RS00120 0.75 -2.0 26,952 + EX31_RS00120 0.77 +0.6 26,954 + EX31_RS00120 0.77 -0.6 27,079 - EX31_RS00120 0.89 -0.6 27,079 - EX31_RS00120 0.89 +1.5 27,080 + EX31_RS00120 0.89 +0.3 27,080 + EX31_RS00120 0.89 +1.1 27,081 - EX31_RS00120 0.89 +1.6
Or see this region's nucleotide sequence